myRT

myRT report for GCA_010668045.1_ASM1066804v1

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Seq: WTFK01000014.1 Escherichia coli strain 89PenNDM NODE_14_length_131626_cov_126.42, whole genome shotgun sequence (131626 bp)
Overview 1 RT 1: 43382-53677 bp Neighborhood of RT #1 [43382, 53694] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43382-44047 bp Feature: domain Description: Resolvase Location: 43403-43820 bp Feature: domain Description: Resolvase Location: 43403-43820 bp Feature: gene Location: 44096-44278 bp Feature: gene Location: 44315-46021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44465-45062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44465-45062 bp Feature: gene Location: 46158-46655 bp Feature: gene Location: 46895-47356 bp Feature: domain Description: HTH_XRE Location: 46925-47093 bp Feature: domain Description: HTH_XRE Location: 46925-47093 bp Feature: gene Location: 47387-48568 bp Feature: domain Description: DUF4062 Location: 47402-47729 bp Feature: domain Description: DUF4062 Location: 47402-47729 bp Feature: gene Location: 49277-50461 bp Feature: domain Description: PRK09692 Location: 49283-50438 bp Feature: domain Description: PRK09692 Location: 49283-50438 bp Feature: gene Location: 50454-52082 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50862-51291 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50862-51 291 bp Feature: gene Location: 52079-52819 bp Feature: gene Location: 53122-53694 bp Feature: domain Description: Psu Location: 53140-53677 bp Feature: domain Description: Psu Location: 531 40-53677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: WTFK01000015.1 Escherichia coli strain 89PenNDM NODE_15_length_130512_cov_139.901, whole genome shotgun sequence (130512 bp)
Overview 1 RT 1: 43890-47505 bp Neighborhood of RT #1 [43890, 47505] RVT-GII GIIM Feature: gene Location: 43890-44276 bp Feature: gene Location: 44296-44547 bp Feature: gene Location: 44780-46168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45110-45728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45110-4572 8 bp Feature: domain Description: GIIM Note: maturase Location: 45779-46001 bp Feature: domain Description: GIIM Note: maturase Location: 45779-46001 bp Feature: gene Location: 46199-46492 bp Feature: gene Location: 46654-47505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WTFK01000004.1 Escherichia coli strain 89PenNDM NODE_4_length_250540_cov_121.229, whole genome shotgun sequence (250540 bp)
Overview 1 RT 1: 244672-250419 bp Neighborhood of RT #1 [244672, 250538] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 244672-246258 bp Feature: domain Description: prfC Location: 244690-246256 bp Feature: domain Description: prfC Location: 244690-246256 bp Feature: gene Location: 246478-246738 bp Feature: domain Description: PRK10597 Location: 246481-246721 bp Feature: domain Description: PRK10597 Location: 246481-246721 bp Feature: gene Location: 247096-248700 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247387-247978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2473 87-247978 bp Feature: domain Description: TIR_2 Location: 248305-248638 bp Feature: domain Description: TIR_2 Location: 2483 05-24863 8 bp Feature: gene Location: 249145-249729 bp Feature: domain Description: Caudo_TAP Location: 249361-249718 bp Feature: domain Description: Caudo_TAP Location: 2493 61-249718 bp Feature: gene Location: 249729-250538 bp Feature: domain Description: Collar Location: 249858-249996 bp Feature: domain Description: Collar Location: 249858-249996 bp Feature: domain Description: Phage_fiber Location: 250047-250086 bp Feature: domain Description: Phage_fiber Location: 250047-250086 bp Feature: domain Description: Phage_fiber Location: 250143-250182 bp Feature: domain Description: Phage_fiber Location: 250143 -250182 bp Feature: domain Description: Phage_fiber Location: 250341-250380 bp Feature: domain Description: Phage_fiber Location: 2503 41-2503 80 bp Feature: domain Description: Phage_fiber Location: 250386-250419 bp Feature: domain Description: Phage_fiber Location: 2503 86-250419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)