myRT

myRT report for GCA_010668285.1_ASM1066828v1

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Seq: WUEW01000015.1 Rhizobium leguminosarum strain JHI1266 JHI1266_NODE_15_length_162672_cov_43.1038, whole genome shotgun sequence (162672 bp)
Overview 1 RT 1: 4835-12198 bp Neighborhood of RT #1 [4835, 12236] YbjD YbjD PLDc_unchar6 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 4835-6664 bp Feature: domain Description: YbjD Location: 4838-5168 bp Feature: domain Description: YbjD Location: 4838-51 68 bp Feature: domain Description: YbjD Location: 5660-5933 bp Feature: domain Description: YbjD Location: 5660-5933 bp Feature: gene Location: 6967-8166 bp Feature: domain Description: PLDc_unchar6 Location: 7615-7990 bp Feature: domain Description: PLDc_unchar6 Location: 761 5-7990 bp Feature: gene Location: 8308-10131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9046-9736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9046-9736 bp Feature: gene Location: 10241-11830 bp Feature: domain Description: LZ_Tnp_IS66 Location: 10358-10586 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 0358-1 0586 bp Feature: domain Description: zf-IS66 Location: 10613-10739 bp Feature: domain Description: zf-IS66 Location: 1 061 3-1 0739 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10802-11669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 0802-1 1 669 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11690-11801 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 690-1 1 801 bp Feature: gene Location: 11883-12236 bp Feature: domain Description: TnpB_IS66 Location: 11910-12198 bp Feature: domain Description: TnpB_IS66 Location: 1 1 91 0-1 21 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), PLDc_unchar6 (cd09176), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: WUEW01000029.1 Rhizobium leguminosarum strain JHI1266 JHI1266_NODE_29_length_90381_cov_32.7627, whole genome shotgun sequence (90381 bp)
Overview 1 RT 1: 72085-78647 bp Neighborhood of RT #1 [72085, 80137] Amidohydro_2 RVT-UG11 PLDc_unchar6 PLDc_unchar6 Feature: gene Location: 72085-73803 bp Feature: domain Description: Amidohydro_2 Location: 73003-73687 bp Feature: domain Description: Amidohydro_2 Location: 73003-73687 bp Feature: gene Location: 74352-74546 bp Feature: gene Location: 74768-75601 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 74906-75338 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 74906-75338 bp Feature: gene Location: 76076-77731 bp Feature: gene Location: 77732-80137 bp Feature: domain Description: PLDc_unchar6 Location: 77987-78089 bp Feature: domain Description: PLDc_unchar6 Location: 77987-78089 bp Feature: domain Description: PLDc_unchar6 Location: 78338-78647 bp Feature: domain Description: PLDc_unchar6 Location: 78338-78647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Amidohydro_2 (pfam04909), RVT-UG11, PLDc_unchar6 (cd09176)

Seq: WUEW01000002.1 Rhizobium leguminosarum strain JHI1266 JHI1266_NODE_2_length_497427_cov_30.68, whole genome shotgun sequence (497427 bp)
Overview 1 RT 1: 309002-316352 bp Neighborhood of RT #1 [309002, 317992] RVT-UG1 DUF262 DUF1524 DUF262 Feature: gene Location: 309002-309157 bp Feature: gene Location: 309214-309588 bp Feature: gene Location: 309819-313523 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 310401-310893 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3 10401-3 10893 bp Feature: gene Location: 313851-315671 bp Feature: domain Description: DUF262 Location: 313983-314553 bp Feature: domain Description: DUF262 Location: 3 13 983 -3 14553 bp Feature: domain Description: DUF1524 Location: 315033-315486 bp Feature: domain Description: DUF1524 Location: 3 1503 3 -3 15486 bp Feature: gene Location: 315668-317992 bp Feature: domain Description: DUF262 Location: 315704-316352 bp Feature: domain Description: DUF262 Location: 3 15704-3 163 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, DUF262 (pfam03235), DUF1524 (pfam07510)

Seq: WUEW01000005.1 Rhizobium leguminosarum strain JHI1266 JHI1266_NODE_5_length_343704_cov_31.2819, whole genome shotgun sequence (343704 bp)
Overview 1 RT 1: 3458-7535 bp Neighborhood of RT #1 [3458, 7535] DDE_Tnp_Tn3 DDE_Tnp_Tn3 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 3458-3973 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3620-3878 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3620-3878 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3884-3947 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3884 -394 7 bp Feature: gene Location: 3908-4060 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3920-4031 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3920-4 031 bp Feature: gene Location: 4170-5993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4911-5598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 911-5598 bp Feature: gene Location: 6277-6981 bp Feature: gene Location: 6861-7535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), DDE_Tnp_IS66_C (pfam13817), RVT-GII