myRT

myRT report for GCA_010668355.1_ASM1066835v1

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Seq: WUEZ01000118.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_118_length_871_cov_350.124, whole genome shotgun sequence (871 bp)
Overview 1 RT 1: 3-819 bp Neighborhood of RT #1 [3, 821] RVT-GII Feature: gene Location: 3-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-81 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUEZ01000150.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_150_length_368_cov_26.2033, whole genome shotgun sequence (368 bp)
Overview 1 RT 1: 1-220 bp Neighborhood of RT #1 [1, 366] RVT-GII Feature: gene Location: 1-366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-2 2 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUEZ01000019.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_19_length_136419_cov_29.0239, whole genome shotgun sequence (136419 bp)
Overview 1 RT 1: 490-6888 bp Neighborhood of RT #1 [490, 7160] PinE RVT-UG9 PRK14975 MPP_1 Feature: gene Location: 490-978 bp Feature: gene Location: 1065-1745 bp Feature: domain Description: PinE Location: 1068-1674 bp Feature: domain Description: PinE Location: 1068-1674 bp Feature: gene Location: 1947-3608 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2154-2805 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2154-2805 bp Feature: gene Location: 3601-5193 bp Feature: domain Description: PRK14975 Location: 4393-5131 bp Feature: domain Description: PRK14975 Location: 43 93 -513 1 bp Feature: gene Location: 5508-7160 bp Feature: domain Description: MPP_1 Location: 6123-6888 bp Feature: domain Description: MPP_1 Location: 6123 -6888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), MPP_1 (cd07400)

Seq: WUEZ01000001.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_1_length_324988_cov_30.4207, whole genome shotgun sequence (324988 bp)
Overview 1 RT 1: 169720-173691 bp Neighborhood of RT #1 [169720, 173792] RVT-Retrons DUF4238 Feature: gene Location: 169720-170115 bp Feature: gene Location: 170147-170959 bp Feature: gene Location: 171141-172304 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171402-172032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1714 02-172032 bp Feature: gene Location: 172481-172792 bp Feature: gene Location: 172851-173792 bp Feature: domain Description: DUF4238 Location: 172872-173691 bp Feature: domain Description: DUF4 238 Location: 172872-173691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4238 (pfam14022)

Seq: WUEZ01000023.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_23_length_124690_cov_29.0046, whole genome shotgun sequence (124690 bp)
Overview 1 RT 1: 3-1809 bp Neighborhood of RT #1 [3, 1811] RVT-GII GIIM COG5394 Feature: gene Location: 3-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-246 bp Feature: domain Description: GIIM Note: maturase Location: 300-507 bp Feature: domain Description: GIIM Note: maturase Location: 300-5 07 bp Feature: gene Location: 855-1076 bp Feature: gene Location: 1239-1811 bp Feature: domain Description: COG5394 Location: 1242-1809 bp Feature: domain Description: COG5 394 Location: 1242-1809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5394 (Polyhydroxyalkanoate (PHA) synthesis regulator protein, binds DNA and PHA )

Seq: WUEZ01000004.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_4_length_228130_cov_28.5715, whole genome shotgun sequence (228130 bp)
Overview 1 RT 1: 225653-227970 bp Neighborhood of RT #1 [225653, 228128] PRK00702 HAD_PGPase RVT-GII GIIM Feature: gene Location: 225653-226351 bp Feature: domain Description: PRK00702 Location: 225656-226334 bp Feature: domain Description: PRK00702 Location: 2256 56 -226 334 bp Feature: gene Location: 225818-227293 bp Feature: domain Description: HAD_PGPase Location: 226616-227246 bp Feature: domain Description: HAD_PGPase Location: 226 6 16 -227246 bp Feature: gene Location: 227466-228128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227469-227709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22746 9-227709 bp Feature: domain Description: GIIM Note: maturase Location: 227763-227970 bp Feature: domain Description: GIIM Note: maturase Location: 22776 3-227970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00702 (ribose-5-phosphate isomerase RpiA), HAD_PGPase (cd16421), RVT-GII, GIIM (pfam08388)

Seq: WUEZ01000071.1 Rhizobium leguminosarum strain JHI1096 JHI1096_NODE_71_length_19348_cov_30.4516, whole genome shotgun sequence (19348 bp)
Overview 1 RT 1: 15798-18826 bp Neighborhood of RT #1 [15798, 19227] AtoC DUF2188 XerC RVT-CRISPR-like2 Feature: gene Location: 15798-16160 bp Feature: domain Description: AtoC Location: 15804-16152 bp Feature: domain Description: AtoC Location: 15804-16152 bp Feature: gene Location: 16538-17731 bp Feature: domain Description: DUF2188 Location: 16592-16760 bp Feature: domain Description: DUF2188 Location: 16592-167 60 bp Feature: domain Description: XerC Location: 16796-17645 bp Feature: domain Description: XerC Location: 167 96-17 645 bp Feature: gene Location: 18154-19227 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 18229-18826 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 18229-18826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), DUF2188 (pfam09954), XerC (COG4973), RVT-CRISPR