myRT

myRT report for GCA_010668385.1_ASM1066838v1

Download annotations/find similar RTs

Seq: WUFA01000128.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_128_length_871_cov_477.864, whole genome shotgun sequence (871 bp)
Overview 1 RT 1: 3-819 bp Neighborhood of RT #1 [3, 821] RVT-GII Feature: gene Location: 3-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-81 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUFA01000017.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_17_length_136419_cov_42.3909, whole genome shotgun sequence (136419 bp)
Overview 1 RT 1: 490-6888 bp Neighborhood of RT #1 [490, 7160] PinE RVT-UG9 PRK14975 MPP_1 Feature: gene Location: 490-978 bp Feature: gene Location: 1065-1745 bp Feature: domain Description: PinE Location: 1068-1674 bp Feature: domain Description: PinE Location: 1068-1674 bp Feature: gene Location: 1947-3608 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2154-2805 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2 154-2 805 bp Feature: gene Location: 3601-5193 bp Feature: domain Description: PRK14975 Location: 4393-5131 bp Feature: domain Description: PRK14975 Location: 4393-5131 bp Feature: gene Location: 5508-7160 bp Feature: domain Description: MPP_1 Location: 6123-6888 bp Feature: domain Description: MPP_1 Location: 612 3-6888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), MPP_1 (cd07400)

Seq: WUFA01000001.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_1_length_324109_cov_43.8418, whole genome shotgun sequence (324109 bp)
Overview 1 RT 1: 169720-173691 bp Neighborhood of RT #1 [169720, 173792] RVT-Retrons DUF4238 Feature: gene Location: 169720-170115 bp Feature: gene Location: 170147-170959 bp Feature: gene Location: 171141-172304 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171402-172032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171402-17203 2 bp Feature: gene Location: 172481-172792 bp Feature: gene Location: 172851-173792 bp Feature: domain Description: DUF4238 Location: 172872-173691 bp Feature: domain Description: DUF423 8 Location: 172872-173 691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4238 (pfam14022)

Seq: WUFA01000026.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_26_length_105004_cov_42.4666, whole genome shotgun sequence (105004 bp)
Overview 1 RT 1: 3-1809 bp Neighborhood of RT #1 [3, 1811] RVT-GII GIIM COG5394 Feature: gene Location: 3-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-24 6 bp Feature: domain Description: GIIM Note: maturase Location: 300-507 bp Feature: domain Description: GIIM Note: maturase Location: 300-507 bp Feature: gene Location: 855-1076 bp Feature: gene Location: 1239-1811 bp Feature: domain Description: COG5394 Location: 1242-1809 bp Feature: domain Description: COG5394 Location: 124 2-1809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5394 (Polyhydroxyalkanoate (PHA) synthesis regulator protein, binds DNA and PHA )

Seq: WUFA01000301.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_305_length_368_cov_37.6639, whole genome shotgun sequence (368 bp)
Overview 1 RT 1: 1-220 bp Neighborhood of RT #1 [1, 366] RVT-GII Feature: gene Location: 1-366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUFA01000004.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_4_length_228130_cov_41.6705, whole genome shotgun sequence (228130 bp)
Overview 1 RT 1: 225653-227970 bp Neighborhood of RT #1 [225653, 228128] PRK00702 HAD_PGPase RVT-GII GIIM Feature: gene Location: 225653-226351 bp Feature: domain Description: PRK00702 Location: 225656-226334 bp Feature: domain Description: PRK00702 Location: 2256 56 -226 334 bp Feature: gene Location: 225818-227293 bp Feature: domain Description: HAD_PGPase Location: 226616-227246 bp Feature: domain Description: HAD_PGPase Location: 226 6 16 -227246 bp Feature: gene Location: 227466-228128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227469-227709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22746 9-227709 bp Feature: domain Description: GIIM Note: maturase Location: 227763-227970 bp Feature: domain Description: GIIM Note: maturase Location: 22776 3-227970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00702 (ribose-5-phosphate isomerase RpiA), HAD_PGPase (cd16421), RVT-GII, GIIM (pfam08388)

Seq: WUFA01000076.1 Rhizobium leguminosarum strain JHI1093 JHI1093_NODE_76_length_19348_cov_44.9522, whole genome shotgun sequence (19348 bp)
Overview 1 RT 1: 15798-18826 bp Neighborhood of RT #1 [15798, 19227] AtoC DUF2188 XerC RVT-CRISPR-like2 Feature: gene Location: 15798-16160 bp Feature: domain Description: AtoC Location: 15804-16152 bp Feature: domain Description: AtoC Location: 15804-16152 bp Feature: gene Location: 16538-17731 bp Feature: domain Description: DUF2188 Location: 16592-16760 bp Feature: domain Description: DUF2188 Location: 16592-167 60 bp Feature: domain Description: XerC Location: 16796-17645 bp Feature: domain Description: XerC Location: 167 96-17 645 bp Feature: gene Location: 18154-19227 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 18229-18826 bp Feature: RT Description: RVT-CRISPR-like2 Note: CRISPR-like2 RT Location: 18229-18826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), DUF2188 (pfam09954), XerC (COG4973), RVT-CRISPR