myRT

myRT report for GCA_010668625.1_ASM1066862v1

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Seq: WUFJ01000017.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_17_length_121184_cov_16.1931, whole genome shotgun sequence (121184 bp)
Overview 1 RT 1: 67408-71229 bp Neighborhood of RT #1 [67408, 71229] ArdC RVT_N RVT-GII GIIM HNH Feature: gene Location: 67408-67719 bp Feature: gene Location: 67775-68401 bp Feature: domain Description: ArdC Location: 67781-68390 bp Feature: domain Description: ArdC Location: 67781 -68390 bp Feature: gene Location: 68520-70211 bp Feature: domain Description: RVT_N Location: 68565-68811 bp Feature: domain Description: RVT_N Location: 68565-6881 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68859-69498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68859-69498 bp Feature: domain Description: GIIM Note: maturase Location: 69576-69804 bp Feature: domain Description: GIIM Note: maturase Location: 69576-69804 bp Feature: domain Description: HNH Note: nucleases Location: 70038-70164 bp Feature: domain Description: HNH Note: nucleases Location: 70038-701 64 bp Feature: gene Location: 70448-70864 bp Feature: gene Location: 71035-71229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: WUFJ01000180.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_180_length_1869_cov_21.9971, whole genome shotgun sequence (1869 bp)
Overview 1 RT 1: 235-1491 bp Neighborhood of RT #1 [235, 1868] Rve RVT-GII Feature: gene Location: 235-1227 bp Feature: domain Description: Rve Location: 943-1150 bp Feature: domain Description: Rve Location: 943-1150 bp Feature: gene Location: 1224-1868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1266-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 66-1491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII

Seq: WUFJ01000197.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_197_length_1357_cov_111.698, whole genome shotgun sequence (1357 bp)
Overview 1 RT 1: 3-1320 bp Neighborhood of RT #1 [3, 1319] RVT-GII Feature: gene Location: 3-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741-13 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUFJ01000199.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_199_length_1343_cov_52.7352, whole genome shotgun sequence (1343 bp)
Overview 1 RT 1: 1-730 bp Neighborhood of RT #1 [1, 732] RVT-GII Feature: gene Location: 1-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUFJ01000212.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_212_length_1189_cov_181.29, whole genome shotgun sequence (1189 bp)
Overview 1 RT 1: 72-1002 bp Neighborhood of RT #1 [72, 1187] RVT-GII GIIM Feature: gene Location: 72-1187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120-741 bp Feature: domain Description: GIIM Note: maturase Location: 789-1002 bp Feature: domain Description: GIIM Note: maturase Location: 789-1002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WUFJ01000271.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_271_length_512_cov_208.465, whole genome shotgun sequence (512 bp)
Overview 1 RT 1: 3-510 bp Neighborhood of RT #1 [3, 509] RVT-GII Feature: gene Location: 3-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WUFJ01000027.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_27_length_97940_cov_17.773, whole genome shotgun sequence (97940 bp)
Overview 1 RT 1: 252-4186 bp Neighborhood of RT #1 [252, 4191] RVT-GII GIIM PBP2_UgpB UgpE Feature: gene Location: 252-1613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57 9-1191 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1455 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1455 bp Feature: gene Location: 2063-3328 bp Feature: domain Description: PBP2_UgpB Location: 2141-3302 bp Feature: domain Description: PBP2_UgpB Location: 2141-3302 bp Feature: gene Location: 3355-4191 bp Feature: domain Description: UgpE Location: 3376-4186 bp Feature: domain Description: UgpE Location: 337 6-4186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_UgpB (cd14748), UgpE (COG0395)

Seq: WUFJ01000049.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_49_length_52973_cov_28.8366, whole genome shotgun sequence (52973 bp)
Overview 1 RT 1: 6713-14106 bp Neighborhood of RT #1 [6713, 14106] SRAP RVT_N RVT-GII GIIM RVT-GII PRK02406 Feature: gene Location: 6713-6853 bp Feature: gene Location: 6936-7613 bp Feature: domain Description: SRAP Location: 6939-7575 bp Feature: domain Description: SRAP Location: 6939-7575 bp Feature: gene Location: 8343-9863 bp Feature: domain Description: RVT_N Location: 8349-8565 bp Feature: domain Description: RVT_N Location: 8 349-8 565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8649-9411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 649-9411 bp Feature: domain Description: GIIM Note: maturase Location: 9483-9708 bp Feature: domain Description: GIIM Note: maturase Location: 948 3-9708 bp Feature: gene Location: 10879-11745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10885-11365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108 8 5-11365 bp Feature: gene Location: 11936-12928 bp Feature: domain Description: PRK02406 Location: 11939-12881 bp Feature: domain Description: PRK02406 Location: 11939-128 8 1 bp Feature: gene Location: 13018-14106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK02406 (DNA polymerase IV; Validated)

Seq: WUFJ01000058.1 Rhizobium leguminosarum strain JHI925 JHI925_NODE_58_length_40429_cov_18.3948, whole genome shotgun sequence (40429 bp)
Overview 1 RT 1: 38949-40054 bp Neighborhood of RT #1 [38949, 40428] COG3791 GFA RVT-GII Feature: gene Location: 38949-39365 bp Feature: domain Description: COG3791 Location: 38952-39354 bp Feature: domain Description: COG379 1 Location: 389 52-39 354 bp Feature: gene Location: 39414-39692 bp Feature: domain Description: GFA Location: 39417-39636 bp Feature: domain Description: GFA Location: 39 417-39 636 bp Feature: gene Location: 39784-40428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39826-40054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39 826-40054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3791 (Uncharacterized conserved protein ), GFA (pfam04828), RVT-GII