myRT

myRT report for GCA_010671905.1_ASM1067190v1

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Seq: JAAHII010000001.1 Leptolyngbya sp. SIOISBB ISBB_NODE_1, whole genome shotgun sequence (7873556 bp)
Overview 1 RT 1: 3089497-3093533 bp 2 RT 2: 4025301-4028420 bp 3 RT 3: 6673121-6678711 bp 4 RT 4: 7052098-7057275 bp Neighborhood of RT #1 [3089497, 3093613] YhhI DDE_Tnp_1_assoc RVT-CRISPR RVT-CRISPR Cas1_I-II-III Cas2_I_II_III 23S_rRNA_IVP Neighborhood of RT #2 [4025301, 4028458] UPF0175 Uma2 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #3 [6673121, 6678749] NACHT Pentapeptide Uma2 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [7052098, 7057275] TPR_12 TPR_12 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III RVT-CRISPR Feature: gene Location: 3089497-3089721 bp Feature: domain Description: YhhI Location: 3089503-3089641 bp Feature: domain Description: YhhI Location: 3089503-3089641 bp Feature: gene Location: 3089748-3090578 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 3089763-3090024 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 3089763-3090024 bp Feature: gene Location: 3090793-3091077 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3090982-3091075 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3090982-3091 075 bp Feature: gene Location: 3091147-3092769 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3091153-3091591 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3091 1 53-3091 591 bp Feature: domain Description: Cas1_I-II-III Location: 3091774-3092731 bp Feature: domain Description: Cas1 _I-II-III Location: 3091 774-3092731 bp Feature: gene Location: 3092856-3093056 bp Feature: domain Description: Cas2_I_II_III Location: 3092862-3093018 bp Feature: domain Description: Cas2_I_II_III Location: 3092862-309301 8 bp Feature: gene Location: 3093191-3093613 bp Feature: domain Description: 23S_rRNA_IVP Location: 3093224-3093533 bp Feature: domain Description: 23S_rRNA_IVP Location: 3093224-3093533 bp Feature: gene Location: 4025301-4025561 bp Feature: domain Description: UPF0175 Location: 4025331-4025538 bp Feature: domain Description: UPF01 75 Location: 4025331 -4025538 bp Feature: gene Location: 4025699-4026145 bp Feature: domain Description: Uma2 Location: 4025735-4026131 bp Feature: domain Description: Uma2 Location: 4025735-40261 31 bp Feature: gene Location: 4026722-4027567 bp Feature: domain Description: RVT_N Location: 4026779-4027025 bp Feature: domain Description: RVT_N Location: 4026779-4027025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4027073-4027511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4027073-402751 1 bp Feature: gene Location: 4027607-4027750 bp Feature: gene Location: 4027790-4028458 bp Feature: domain Description: GIIM Note: maturase Location: 4027808-4028036 bp Feature: domain Description: GIIM Note: maturase Location: 4027808-4028036 bp Feature: domain Description: HNHc Note: nucleases Location: 4028270-4028420 bp Feature: domain Description: HNHc Note: nucleases Location: 4028270-4028420 bp Feature: gene Location: 6673121-6675733 bp Feature: domain Description: NACHT Location: 6673970-6674273 bp Feature: domain Description: NACHT Location: 6673970-6674273 bp Feature: domain Description: Pentapeptide Location: 6675449-6675536 bp Feature: domain Description: Pentapeptide Location: 6675449-6675536 bp Feature: gene Location: 6675999-6676436 bp Feature: domain Description: Uma2 Location: 6676032-6676422 bp Feature: domain Description: Uma2 Location: 6676032-6676422 bp Feature: gene Location: 6677013-6677858 bp Feature: domain Description: RVT_N Location: 6677070-6677316 bp Feature: domain Description: RVT_N Location: 6677070-667731 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6677364-6677802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6677364-6677802 bp Feature: gene Location: 6677898-6678041 bp Feature: gene Location: 6678081-6678749 bp Feature: domain Description: GIIM Note: maturase Location: 6678099-6678327 bp Feature: domain Description: GIIM Note: maturase Location: 6678099-6678327 bp Feature: domain Description: HNHc Note: nucleases Location: 6678561-6678711 bp Feature: domain Description: HNHc Note: nucleases Location: 6678561 -667871 1 bp Feature: gene Location: 7052098-7052583 bp Feature: domain Description: TPR_12 Location: 7052125-7052254 bp Feature: domain Description: TPR_1 2 Location: 70521 25-7052254 bp Feature: domain Description: TPR_12 Location: 7052296-7052521 bp Feature: domain Description: TPR_1 2 Location: 7052296-7052521 bp Feature: gene Location: 7054210-7054542 bp Feature: domain Description: Cas2_I_II_III Location: 7054219-7054450 bp Feature: domain Description: Cas2_I_II_III Location: 705421 9-7054450 bp Feature: gene Location: 7054542-7056515 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7054929-7055247 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7054929-7055247 bp Feature: domain Description: Cas1_I-II-III Location: 7055520-7056480 bp Feature: domain Description: Cas1 _I-II-III Location: 7055520-7056480 bp Feature: gene Location: 7056004-7056678 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7056211-7056484 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 705621 1 -7056484 bp Feature: gene Location: 7056760-7056900 bp Feature: gene Location: 7056916-7057275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), DDE_Tnp_1_assoc (pfam13808), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), 23S_rRNA_IVP (pfam05635), UPF0175 (pfam03683), Uma2 (pfam05685), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HNHc (smart00507), NACHT (pfam05729), Pentapeptide (pfam00805), TPR_12 (pfam13424)

Seq: JAAHII010000002.1 Leptolyngbya sp. SIOISBB ISBB_NODE_2, whole genome shotgun sequence (463482 bp)
Overview 1 RT 1: 135982-138227 bp 2 RT 2: 220020-225147 bp 3 RT 3: 447940-451148 bp Neighborhood of RT #1 [135982, 138227] GIIM HNHc RVT-GII RVT_N Neighborhood of RT #2 [220020, 225242] HTH_XRE AAA_16 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III 23S_rRNA_IVP Neighborhood of RT #3 [447940, 451180] Avd_like RVT-DGRs YfmG YfmG Feature: gene Location: 135982-136650 bp Feature: domain Description: GIIM Note: maturase Location: 136000-136228 bp Feature: domain Description: GIIM Note: maturase Location: 136000-1362 2 8 bp Feature: domain Description: HNHc Note: nucleases Location: 136462-136612 bp Feature: domain Description: HNHc Note: nucleases Location: 136462 -136612 bp Feature: gene Location: 136690-136833 bp Feature: gene Location: 136873-137427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136933-137371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136933-137371 bp Feature: gene Location: 137318-137719 bp Feature: domain Description: RVT_N Location: 137375-137606 bp Feature: domain Description: RVT_N Location: 137375-137606 bp Feature: gene Location: 137976-138227 bp Feature: gene Location: 220020-220793 bp Feature: gene Location: 220881-222296 bp Feature: domain Description: HTH_XRE Location: 220956-221082 bp Feature: domain Description: HTH_XRE Location: 2 2 0956-2 2 1082 bp Feature: domain Description: AAA_16 Location: 221175-221571 bp Feature: domain Description: AAA_16 Location: 2 2 1175-2 2 1571 bp Feature: gene Location: 222560-224530 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 222749-223358 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 2 2 749-2 2 3358 bp Feature: domain Description: Cas1_I-II-III Location: 223535-224492 bp Feature: domain Description: Cas1_I-II-III Location: 2 2 3535-2 2 4492 bp Feature: gene Location: 224530-224808 bp Feature: domain Description: Cas2_I_II_III Location: 224539-224764 bp Feature: domain Description: Cas2 _I_II_III Location: 2 2 4539-2 2 4764 bp Feature: gene Location: 224823-225242 bp Feature: domain Description: 23S_rRNA_IVP Location: 224850-225147 bp Feature: domain Description: 2 3S_rRNA_IVP Location: 2 2 4850-2 2 5147 bp Feature: gene Location: 447940-448380 bp Feature: gene Location: 448361-448723 bp Feature: domain Description: Avd_like Location: 448379-448685 bp Feature: domain Description: Avd_like Location: 448379-448685 bp Feature: gene Location: 448769-449908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 448979-449618 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 448979-449618 bp Feature: gene Location: 449962-450207 bp Feature: domain Description: YfmG Location: 449983-450088 bp Feature: domain Description: YfmG Location: 449983-450088 bp Feature: gene Location: 450344-451180 bp Feature: domain Description: YfmG Location: 450422-451148 bp Feature: domain Description: YfmG Location: 45042 2 -451148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655), HTH_XRE (smart00530), AAA_16 (pfam13191), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), 23S_rRNA_IVP (pfam05635)
Avd_like (cd16376), RVT-DGRs, YfmG (COG1262)