myRT

myRT report for GCA_010671965.1_ASM1067196v1

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Seq: JAAHIC010000011.1 Leptolyngbya sp. SIO4C5 4C5_NODE_11, whole genome shotgun sequence (29404 bp)
Overview 1 RT 1: 7052-12759 bp Neighborhood of RT #1 [7052, 12842] 23S_rRNA_IVP Cas2_I_II_III RVT-CRISPR Cas1_I-II-III HTH_XRE AAA_22 TPR TPR TPR_1 TPR_1 TPR Feature: gene Location: 7052-7459 bp Feature: domain Description: 23S_rRNA_IVP Location: 7082-7382 bp Feature: domain Description: 23S_rRNA_IVP Location: 7082-7382 bp Feature: gene Location: 7474-7752 bp Feature: domain Description: Cas2_I_II_III Location: 7483-7711 bp Feature: domain Description: Cas2_I_II_III Location: 7483-771 1 bp Feature: gene Location: 7752-9722 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7941-8550 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7941 -8550 bp Feature: domain Description: Cas1_I-II-III Location: 8727-9684 bp Feature: domain Description: Cas1 _I-II-III Location: 8727-9684 bp Feature: gene Location: 9943-11355 bp Feature: domain Description: HTH_XRE Location: 10018-10150 bp Feature: domain Description: HTH_XRE Location: 1 001 8-1 01 50 bp Feature: domain Description: AAA_22 Location: 10291-10600 bp Feature: domain Description: AAA_22 Location: 1 0291 -1 0600 bp Feature: gene Location: 11352-12842 bp Feature: domain Description: TPR Location: 11616-11796 bp Feature: domain Description: TPR Location: 1 1 61 6-1 1 796 bp Feature: domain Description: TPR Location: 11838-12156 bp Feature: domain Description: TPR Location: 1 1 838-1 21 56 bp Feature: domain Description: TPR_1 Location: 12198-12267 bp Feature: domain Description: TPR_1 Location: 1 21 98-1 2267 bp Feature: domain Description: TPR_1 Location: 12315-12393 bp Feature: domain Description: TPR_1 Location: 1 231 5-1 2393 bp Feature: domain Description: TPR Location: 12438-12759 bp Feature: domain Description: TPR Location: 1 2438-1 2759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), HTH_XRE (smart00530), AAA_22 (pfam13401), TPR (smart00028), TPR_1 (pfam00515)

Seq: JAAHIC010000449.1 Leptolyngbya sp. SIO4C5 4C5_NODE_449, whole genome shotgun sequence (4659 bp)
Overview 1 RT 1: 2038-4539 bp Neighborhood of RT #1 [2038, 4658] YfmG RVT-DGRs Feature: gene Location: 2038-2280 bp Feature: gene Location: 2434-3834 bp Feature: domain Description: YfmG Location: 3049-3823 bp Feature: domain Description: YfmG Location: 3049-382 3 bp Feature: gene Location: 4158-4658 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4221-4539 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 2 1-4539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs

Seq: JAAHIC010000578.1 Leptolyngbya sp. SIO4C5 4C5_NODE_578, whole genome shotgun sequence (3667 bp)
Overview 1 RT 1: 3-2849 bp Neighborhood of RT #1 [3, 2849] YcjD RVT-CRISPR Cas1_I-B Cas2_I_II_III Feature: gene Location: 3-176 bp Feature: domain Description: YcjD Location: 9-105 bp Feature: domain Description: YcjD Location: 9-105 bp Feature: gene Location: 612-1547 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 819-981 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 819-981 bp Feature: domain Description: Cas1_I-B Location: 984-1533 bp Feature: domain Description: Cas1_I-B Location: 984-153 3 bp Feature: gene Location: 1547-1822 bp Feature: domain Description: Cas2_I_II_III Location: 1556-1769 bp Feature: domain Description: Cas2_I_II_III Location: 1556-1769 bp Feature: gene Location: 2526-2849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjD (COG2852), RVT-CRISPR, Cas1_I-B (cd09722), Cas2_I_II_III (cl11442)