myRT

myRT report for GCA_010671975.1_ASM1067197v1

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Seq: JAAHIA010000281.1 Leptolyngbya sp. SIO4C1 4C1_NODE_281, whole genome shotgun sequence (6549 bp)
Overview 1 RT 1: 3566-6296 bp Neighborhood of RT #1 [3566, 6451] XTALbg RVT-GII GIIM Feature: gene Location: 3566-4216 bp Feature: gene Location: 4467-4886 bp Feature: domain Description: XTALbg Location: 4617-4797 bp Feature: domain Description: XTALbg Location: 461 7-4797 bp Feature: gene Location: 5075-6451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5408-6029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5408-6029 bp Feature: domain Description: GIIM Note: maturase Location: 6083-6296 bp Feature: domain Description: GIIM Note: maturase Location: 6083-6296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XTALbg (smart00247), RVT-GII, GIIM (pfam08388)

Seq: JAAHIA010000388.1 Leptolyngbya sp. SIO4C1 4C1_NODE_388, whole genome shotgun sequence (4683 bp)
Overview 1 RT 1: 2081-4682 bp Neighborhood of RT #1 [2081, 4681] PadR XisI-like RVT-CRISPR RVT-CRISPR cas1 Feature: gene Location: 2081-2860 bp Feature: domain Description: PadR Location: 2420-2774 bp Feature: domain Description: PadR Location: 2 42 0-2 774 bp Feature: gene Location: 2934-3260 bp Feature: domain Description: XisI-like Location: 2949-3240 bp Feature: domain Description: XisI-like Location: 2 949-32 40 bp Feature: gene Location: 3852-4217 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4044-4212 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4044-42 12 bp Feature: gene Location: 4217-4681 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4220-4307 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 42 2 0-4307 bp Feature: domain Description: cas1 Location: 4481-4682 bp Feature: domain Description: cas1 Location: 4481-4682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PadR (pfam03551), XisI-like (cl07462), RVT-CRISPR, cas1 (TIGR00287)

Seq: JAAHIA010000434.1 Leptolyngbya sp. SIO4C1 4C1_NODE_434, whole genome shotgun sequence (4030 bp)
Overview 1 RT 1: 531-3976 bp Neighborhood of RT #1 [531, 4029] RVT_N RVT-GII GIIM McrA DUF928 CHASE2 Feature: gene Location: 531-2156 bp Feature: domain Description: RVT_N Location: 564-810 bp Feature: domain Description: RVT_N Location: 564-810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1482 bp Feature: domain Description: GIIM Note: maturase Location: 1566-1797 bp Feature: domain Description: GIIM Note: maturase Location: 1566-1797 bp Feature: domain Description: McrA Location: 1875-2136 bp Feature: domain Description: McrA Location: 1875-213 6 bp Feature: gene Location: 2325-3062 bp Feature: domain Description: DUF928 Location: 2481-3021 bp Feature: domain Description: DUF928 Location: 2481-3 021 bp Feature: gene Location: 3106-4029 bp Feature: domain Description: CHASE2 Location: 3109-3976 bp Feature: domain Description: CHASE2 Location: 3 109-3 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF928 (pfam06051), CHASE2 (smart01080)

Seq: JAAHIA010000055.1 Leptolyngbya sp. SIO4C1 4C1_NODE_55, whole genome shotgun sequence (16314 bp)
Overview 1 RT 1: 12598-16296 bp Neighborhood of RT #1 [12598, 16313] COG4249 YfmG RVT-DGRs Feature: gene Location: 12598-12969 bp Feature: gene Location: 13159-15012 bp Feature: domain Description: COG4249 Location: 13162-14029 bp Feature: domain Description: COG4 24 9 Location: 13162-14 029 bp Feature: domain Description: YfmG Location: 14032-14989 bp Feature: domain Description: YfmG Location: 14 032-14 989 bp Feature: gene Location: 15447-16313 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15657-16296 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15657-16296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262), RVT-DGRs

Seq: JAAHIA010000597.1 Leptolyngbya sp. SIO4C1 4C1_NODE_597, whole genome shotgun sequence (2515 bp)
Overview 1 RT 1: 1-2247 bp Neighborhood of RT #1 [1, 2297] RVT-CRISPR Cas_Cas1 Csx1_III-U Feature: gene Location: 1-1422 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 205-811 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 205 -811 bp Feature: domain Description: Cas_Cas1 Location: 1090-1360 bp Feature: domain Description: Cas_Cas1 Location: 1090-1360 bp Feature: gene Location: 1455-2297 bp Feature: domain Description: Csx1_III-U Location: 2082-2247 bp Feature: domain Description: Csx1_III-U Location: 2082-2247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Csx1_III-U (cl21570)

Seq: JAAHIA010000007.1 Leptolyngbya sp. SIO4C1 4C1_NODE_7, whole genome shotgun sequence (46112 bp)
Overview 1 RT 1: 42303-45846 bp Neighborhood of RT #1 [42303, 46109] YfmG RVT-DGRs RVT-DGRs DDE_Tnp_1 Feature: gene Location: 42303-42431 bp Feature: gene Location: 42789-43664 bp Feature: domain Description: YfmG Location: 42897-43647 bp Feature: domain Description: YfmG Location: 42897-436 47 bp Feature: gene Location: 43971-44600 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43974-44370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43974-44370 bp Feature: gene Location: 44618-44965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44741-44951 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44741-44951 bp Feature: gene Location: 45054-46109 bp Feature: domain Description: DDE_Tnp_1 Location: 45366-45846 bp Feature: domain Description: DDE_Tnp_1 Location: 4536 6 -45846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, DDE_Tnp_1 (pfam01609)

Seq: JAAHIA010000713.1 Leptolyngbya sp. SIO4C1 4C1_NODE_713, whole genome shotgun sequence (1752 bp)
Overview 1 RT 1: 3-1739 bp Neighborhood of RT #1 [3, 1750] RVT-DGRs COG4249 Feature: gene Location: 3-341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24-123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24-123 bp Feature: gene Location: 814-1215 bp Feature: gene Location: 1298-1750 bp Feature: domain Description: COG4249 Location: 1301-1739 bp Feature: domain Description: COG4249 Location: 1301-17 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG4249 (Uncharacterized protein, contains caspase domain )

Seq: JAAHIA010000846.1 Leptolyngbya sp. SIO4C1 4C1_NODE_846, whole genome shotgun sequence (1035 bp)
Overview 1 RT 1: 37-532 bp Neighborhood of RT #1 [37, 1032] RVT-UG13 Feature: gene Location: 37-1032 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 70-532 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 70-532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13