myRT

myRT report for GCA_010672005.1_ASM1067200v1

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Seq: JAAHHZ010000146.1 Moorea sp. SIO4A5 4A5_NODE_146, whole genome shotgun sequence (13812 bp)
Overview 1 RT 1: 8378-11664 bp Neighborhood of RT #1 [8378, 11678] ABC_6TM_HetC_like McrA RVT_N RVT-GII GIIM ABC_6TM_HetC_like Feature: gene Location: 8378-8710 bp Feature: domain Description: ABC_6TM_HetC_like Location: 8381-8651 bp Feature: domain Description: ABC_6TM_HetC_like Location: 8381 -8651 bp Feature: gene Location: 8859-9224 bp Feature: domain Description: McrA Location: 8916-9183 bp Feature: domain Description: McrA Location: 891 6-91 83 bp Feature: gene Location: 9306-10559 bp Feature: RT Description: RVT_N Location: 9342-9588 bp Feature: RT Description: RVT_N Location: 9342-9588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9630-10281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9630-1 0281 bp Feature: domain Description: GIIM Note: maturase Location: 10365-10503 bp Feature: domain Description: GIIM Note: maturase Location: 1 0365-1 0503 bp Feature: gene Location: 10800-10985 bp Feature: gene Location: 11136-11678 bp Feature: domain Description: ABC_6TM_HetC_like Location: 11160-11664 bp Feature: domain Description: ABC_6TM_HetC_like Location: 1 1 1 60-1 1 664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_6TM_HetC_like (cd18568), McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHHZ010000173.1 Moorea sp. SIO4A5 4A5_NODE_173, whole genome shotgun sequence (11183 bp)
Overview 1 RT 1: 239-3489 bp Neighborhood of RT #1 [239, 3489] RVT_N RVT-GII GIIM HNHc COG4328 Feature: gene Location: 239-1987 bp Feature: RT Description: RVT_N Location: 284-530 bp Feature: RT Description: RVT_N Location: 2 84-530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572-1271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572 -12 71 bp Feature: domain Description: GIIM Note: maturase Location: 1370-1604 bp Feature: domain Description: GIIM Note: maturase Location: 1370-1604 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1952 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1952 bp Feature: gene Location: 2546-3019 bp Feature: domain Description: COG4328 Location: 2549-3011 bp Feature: domain Description: COG432 8 Location: 2 549-3011 bp Feature: gene Location: 3274-3489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4328 (Predicted nuclease (RNAse H fold) )

Seq: JAAHHZ010000194.1 Moorea sp. SIO4A5 4A5_NODE_194, whole genome shotgun sequence (9611 bp)
Overview 1 RT 1: 178-3794 bp Neighborhood of RT #1 [178, 3937] RVT_N RVT-GII GIIM McrA DUF3365 HAMP Phosphonate-bd Feature: gene Location: 178-1746 bp Feature: RT Description: RVT_N Location: 262-508 bp Feature: RT Description: RVT_N Location: 262-508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-1153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-1153 bp Feature: domain Description: GIIM Note: maturase Location: 1210-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1210-13 75 bp Feature: domain Description: McrA Location: 1387-1708 bp Feature: domain Description: McrA Location: 13 87-1708 bp Feature: gene Location: 2111-3013 bp Feature: domain Description: DUF3365 Location: 2168-2726 bp Feature: domain Description: DUF3 3 65 Location: 2168-2726 bp Feature: domain Description: HAMP Location: 2795-2999 bp Feature: domain Description: HAMP Location: 2795-2999 bp Feature: gene Location: 3074-3937 bp Feature: domain Description: Phosphonate-bd Location: 3167-3794 bp Feature: domain Description: Phosphonate-bd Location: 3 167-3 794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF3365 (pfam11845), HAMP (smart00304), Phosphonate-bd (pfam12974)

Seq: JAAHHZ010000199.1 Moorea sp. SIO4A5 4A5_NODE_199, whole genome shotgun sequence (9482 bp)
Overview 1 RT 1: 2436-9266 bp Neighborhood of RT #1 [2436, 9301] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 2436-2582 bp Feature: gene Location: 2792-7441 bp Feature: gene Location: 7775-9301 bp Feature: RT Description: RVT_N Location: 7811-8057 bp Feature: RT Description: RVT_N Location: 7811-8057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8108-8537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8108-8537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8543-8708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854 3-8708 bp Feature: domain Description: GIIM Note: maturase Location: 8765-8954 bp Feature: domain Description: GIIM Note: maturase Location: 8765-8954 bp Feature: domain Description: McrA Location: 8984-9266 bp Feature: domain Description: McrA Location: 8984 -9266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000242.1 Moorea sp. SIO4A5 4A5_NODE_242, whole genome shotgun sequence (7151 bp)
Overview 1 RT 1: 306-4563 bp Neighborhood of RT #1 [306, 4563] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 306-482 bp Feature: gene Location: 1030-1203 bp Feature: gene Location: 1835-3745 bp Feature: RT Description: RVT_N Location: 1898-2144 bp Feature: RT Description: RVT_N Location: 1898-2144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192-2864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192-2864 bp Feature: domain Description: GIIM Note: maturase Location: 2936-3167 bp Feature: domain Description: GIIM Note: maturase Location: 2936-3167 bp Feature: domain Description: HNHc Note: nucleases Location: 3377-3539 bp Feature: domain Description: HNHc Note: nucleases Location: 3377-35 39 bp Feature: gene Location: 3891-4079 bp Feature: gene Location: 4396-4563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHHZ010000268.1 Moorea sp. SIO4A5 4A5_NODE_268, whole genome shotgun sequence (6417 bp)
Overview 1 RT 1: 3-3898 bp Neighborhood of RT #1 [3, 3898] AppF RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-368 bp Feature: domain Description: AppF Location: 6-324 bp Feature: domain Description: AppF Location: 6 -324 bp Feature: gene Location: 1244-3109 bp Feature: RT Description: RVT_N Location: 1325-1571 bp Feature: RT Description: RVT_N Location: 1325-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619-2291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 19-2291 bp Feature: domain Description: GIIM Note: maturase Location: 2366-2597 bp Feature: domain Description: GIIM Note: maturase Location: 236 6 -2597 bp Feature: domain Description: HNHc Note: nucleases Location: 2813-2978 bp Feature: domain Description: HNHc Note: nucleases Location: 2813-2978 bp Feature: gene Location: 3291-3605 bp Feature: gene Location: 3602-3898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AppF (COG4608)

Seq: JAAHHZ010000028.1 Moorea sp. SIO4A5 4A5_NODE_28, whole genome shotgun sequence (99651 bp)
Overview 1 RT 1: 14008-21812 bp Neighborhood of RT #1 [14008, 22306] PRK07360 InsQ RVT_N RVT-GII GIIM McrA COG5305 GstA Feature: gene Location: 14008-15141 bp Feature: domain Description: PRK07360 Location: 14026-15136 bp Feature: domain Description: PRK07 360 Location: 14026-15136 bp Feature: gene Location: 15342-16574 bp Feature: domain Description: InsQ Location: 15789-16470 bp Feature: domain Description: InsQ Location: 157 89-1647 0 bp Feature: gene Location: 16726-18249 bp Feature: RT Description: RVT_N Location: 16765-17011 bp Feature: RT Description: RVT_N Location: 167 65-17 011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17062-17665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 062-17 665 bp Feature: domain Description: GIIM Note: maturase Location: 17722-17902 bp Feature: domain Description: GIIM Note: maturase Location: 17 7 22-17 902 bp Feature: domain Description: McrA Location: 17935-18223 bp Feature: domain Description: McrA Location: 17 935-18223 bp Feature: gene Location: 19210-21012 bp Feature: domain Description: COG5305 Location: 19249-20962 bp Feature: domain Description: COG5305 Location: 19249-20962 bp Feature: gene Location: 21098-22306 bp Feature: domain Description: GstA Location: 21239-21812 bp Feature: domain Description: GstA Location: 21239-21812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07360 (FO synthase subunit 2; Reviewed), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), COG5305 (Uncharacterized membrane protein ), GstA (COG0625)

Seq: JAAHHZ010000288.1 Moorea sp. SIO4A5 4A5_NODE_288, whole genome shotgun sequence (5936 bp)
Overview 1 RT 1: 2116-5751 bp Neighborhood of RT #1 [2116, 5903] InsQ InsQ RVT_N RVT-GII RVT-GII GIIM OrfB_Zn_ribbon Feature: gene Location: 2116-2874 bp Feature: domain Description: InsQ Location: 2128-2866 bp Feature: domain Description: InsQ Location: 2128 -28 66 bp Feature: gene Location: 2905-3099 bp Feature: domain Description: InsQ Location: 2968-3094 bp Feature: domain Description: InsQ Location: 2968 -3094 bp Feature: gene Location: 3841-4197 bp Feature: RT Description: RVT_N Location: 3850-4060 bp Feature: RT Description: RVT_N Location: 38 50-4060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4102-4186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4102-418 6 bp Feature: gene Location: 4424-5269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4427-4754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4427-4754 bp Feature: domain Description: GIIM Note: maturase Location: 4841-5066 bp Feature: domain Description: GIIM Note: maturase Location: 48 41-5066 bp Feature: gene Location: 5610-5903 bp Feature: domain Description: OrfB_Zn_ribbon Location: 5616-5751 bp Feature: domain Description: OrfB_Zn_ribbon Location: 5616-5751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), OrfB_Zn_ribbon (pfam07282)

Seq: JAAHHZ010000003.1 Moorea sp. SIO4A5 4A5_NODE_3, whole genome shotgun sequence (392460 bp)
Overview 1 RT 1: 61747-67546 bp 2 RT 2: 92696-99333 bp Neighborhood of RT #1 [61747, 70137] RVT-Retrons SWIM WGR_DNA_ligase HEAT_2 Neighborhood of RT #2 [92696, 99333] RPE65 RVT_N RVT-GII GIIM McrA InsQ Feature: gene Location: 61747-62076 bp Feature: gene Location: 62168-62884 bp Feature: gene Location: 63093-64505 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63639-64260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63639 -64260 bp Feature: gene Location: 64949-66589 bp Feature: domain Description: SWIM Location: 66476-66560 bp Feature: domain Description: SWIM Location: 66476-66560 bp Feature: gene Location: 66955-70137 bp Feature: domain Description: WGR_DNA_ligase Location: 66970-67195 bp Feature: domain Description: WGR_DNA_ligase Location: 669 70-6719 5 bp Feature: domain Description: HEAT_2 Location: 67336-67546 bp Feature: domain Description: HEAT_2 Location: 67336-67546 bp Feature: gene Location: 92696-92833 bp Feature: gene Location: 93308-95149 bp Feature: domain Description: RPE65 Location: 93386-95012 bp Feature: domain Description: RPE65 Location: 9 3386-9 5012 bp Feature: gene Location: 95616-97319 bp Feature: RT Description: RVT_N Location: 95655-95901 bp Feature: RT Description: RVT_N Location: 9 5655-9 59 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95943-96594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 59 43-9 659 4 bp Feature: domain Description: GIIM Note: maturase Location: 96672-96906 bp Feature: domain Description: GIIM Note: maturase Location: 9 6672-9 69 06 bp Feature: domain Description: McrA Location: 96999-97287 bp Feature: domain Description: McrA Location: 9 69 9 9 -9 7287 bp Feature: gene Location: 97901-99103 bp Feature: domain Description: InsQ Location: 97916-99089 bp Feature: domain Description: InsQ Location: 9 79 16-9 9 089 bp Feature: gene Location: 99163-99333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SWIM (pfam04434), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RPE65 (pfam03055), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), InsQ (COG0675)

Seq: JAAHHZ010000033.1 Moorea sp. SIO4A5 4A5_NODE_33, whole genome shotgun sequence (68856 bp)
Overview 1 RT 1: 22056-27709 bp Neighborhood of RT #1 [22056, 27720] InsQ RVT_N RVT-GII RVT-GII GIIM McrA InsQ STKc_PknB_like WD40 WD40 WD40 WD40 WD40 WD40 WD40 Feature: gene Location: 22056-23024 bp Feature: domain Description: InsQ Location: 22059-23007 bp Feature: domain Description: InsQ Location: 22059-23007 bp Feature: gene Location: 23124-23264 bp Feature: gene Location: 23586-25097 bp Feature: RT Description: RVT_N Location: 23616-23862 bp Feature: RT Description: RVT_N Location: 23616-23862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23913-24342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23913-24342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24348-24510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24348-24510 bp Feature: domain Description: GIIM Note: maturase Location: 24570-24756 bp Feature: domain Description: GIIM Note: maturase Location: 24570-24756 bp Feature: domain Description: McrA Location: 24786-25071 bp Feature: domain Description: McrA Location: 24786-25071 bp Feature: gene Location: 25217-25609 bp Feature: domain Description: InsQ Location: 25271-25559 bp Feature: domain Description: InsQ Location: 25271-25559 bp Feature: gene Location: 25786-27720 bp Feature: domain Description: STKc_PknB_like Location: 25885-26737 bp Feature: domain Description: STKc_PknB_like Location: 25885-26737 bp Feature: domain Description: WD40 Location: 26818-26935 bp Feature: domain Description: WD40 Location: 26818-26935 bp Feature: domain Description: WD40 Location: 26953-27058 bp Feature: domain Description: WD40 Location: 26953-27058 bp Feature: domain Description: WD40 Location: 27070-27184 bp Feature: domain Description: WD40 Location: 27070-27184 bp Feature: domain Description: WD40 Location: 27208-27313 bp Feature: domain Description: WD40 Location: 27208-27313 bp Feature: domain Description: WD40 Location: 27322-27436 bp Feature: domain Description: WD40 Location: 27322-27436 bp Feature: domain Description: WD40 Location: 27472-27583 bp Feature: domain Description: WD40 Location: 27472-27583 bp Feature: domain Description: WD40 Location: 27595-27709 bp Feature: domain Description: WD40 Location: 27595-27709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), STKc_PknB_like (cd14014), WD40 (smart00320)

Seq: JAAHHZ010000330.1 Moorea sp. SIO4A5 4A5_NODE_330, whole genome shotgun sequence (5114 bp)
Overview 1 RT 1: 416-3457 bp Neighborhood of RT #1 [416, 3513] RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 416-2179 bp Feature: RT Description: RVT_N Location: 461-707 bp Feature: RT Description: RVT_N Location: 461-707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1532-1730 bp Feature: domain Description: GIIM Note: maturase Location: 1532-1730 bp Feature: domain Description: HNHc Note: nucleases Location: 1940-2108 bp Feature: domain Description: HNHc Note: nucleases Location: 1940-2108 bp Feature: gene Location: 2212-2379 bp Feature: gene Location: 2701-3513 bp Feature: domain Description: InsQ Location: 2713-3457 bp Feature: domain Description: InsQ Location: 2713-3457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHHZ010000343.1 Moorea sp. SIO4A5 4A5_NODE_343, whole genome shotgun sequence (4969 bp)
Overview 1 RT 1: 3-4868 bp Neighborhood of RT #1 [3, 4909] Sigma70_r4 RVT_N RVT-GII GIIM HNH RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 3-437 bp Feature: domain Description: Sigma70_r4 Location: 18-144 bp Feature: domain Description: Sigma70_r4 Location: 18-144 bp Feature: gene Location: 521-775 bp Feature: gene Location: 1524-3224 bp Feature: RT Description: RVT_N Location: 1569-1815 bp Feature: RT Description: RVT_N Location: 1569-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1857-2526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1857-2526 bp Feature: domain Description: GIIM Note: maturase Location: 2616-2838 bp Feature: domain Description: GIIM Note: maturase Location: 2616-2838 bp Feature: domain Description: HNH Note: nucleases Location: 3048-3180 bp Feature: domain Description: HNH Note: nucleases Location: 3048-3180 bp Feature: gene Location: 3395-4909 bp Feature: RT Description: RVT_N Location: 3422-3668 bp Feature: RT Description: RVT_N Location: 3422-3668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719-4139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719-4139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4148-4313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4148-4313 bp Feature: domain Description: GIIM Note: maturase Location: 4370-4550 bp Feature: domain Description: GIIM Note: maturase Location: 4370-4550 bp Feature: domain Description: McrA Location: 4562-4868 bp Feature: domain Description: McrA Location: 4562-4868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058), Sigma70_r4 (pfam04545)

Seq: JAAHHZ010000357.1 Moorea sp. SIO4A5 4A5_NODE_357, whole genome shotgun sequence (4803 bp)
Overview 1 RT 1: 236-1876 bp Neighborhood of RT #1 [236, 1959] RVT-GII GIIM McrA DDE_5 Feature: gene Location: 236-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-623 bp Feature: domain Description: GIIM Note: maturase Location: 707-935 bp Feature: domain Description: GIIM Note: maturase Location: 707-935 bp Feature: domain Description: McrA Location: 992-1283 bp Feature: domain Description: McrA Location: 992-1283 bp Feature: gene Location: 1358-1585 bp Feature: gene Location: 1645-1959 bp Feature: domain Description: DDE_5 Location: 1654-1876 bp Feature: domain Description: DDE_5 Location: 1654-1876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000368.1 Moorea sp. SIO4A5 4A5_NODE_368, whole genome shotgun sequence (4673 bp)
Overview 1 RT 1: 616-4338 bp Neighborhood of RT #1 [616, 4376] InsQ RVT_N RVT-GII GIIM McrA Feature: gene Location: 616-858 bp Feature: gene Location: 1113-2312 bp Feature: domain Description: InsQ Location: 1116-2292 bp Feature: domain Description: InsQ Location: 1116-2292 bp Feature: gene Location: 2865-4376 bp Feature: RT Description: RVT_N Location: 2889-3135 bp Feature: RT Description: RVT_N Location: 2889-3135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3186-3780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3186-3780 bp Feature: domain Description: GIIM Note: maturase Location: 3837-3993 bp Feature: domain Description: GIIM Note: maturase Location: 3837-3993 bp Feature: domain Description: McrA Location: 4053-4338 bp Feature: domain Description: McrA Location: 4053-4338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000037.1 Moorea sp. SIO4A5 4A5_NODE_37, whole genome shotgun sequence (63741 bp)
Overview 1 RT 1: 22653-27556 bp Neighborhood of RT #1 [22653, 27573] COG4243 RVT_N RVT-GII GIIM McrA TIGR00275 Feature: gene Location: 22653-23645 bp Feature: domain Description: COG4243 Location: 22668-23187 bp Feature: domain Description: COG4243 Location: 22668-23187 bp Feature: gene Location: 23813-24022 bp Feature: gene Location: 24313-25617 bp Feature: RT Description: RVT_N Location: 24358-24604 bp Feature: RT Description: RVT_N Location: 24358-24604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24646-25297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24646-25297 bp Feature: domain Description: GIIM Note: maturase Location: 25378-25528 bp Feature: domain Description: GIIM Note: maturase Location: 25378-25528 bp Feature: gene Location: 25662-26024 bp Feature: domain Description: McrA Location: 25689-26004 bp Feature: domain Description: McrA Location: 25689-26004 bp Feature: gene Location: 26296-27573 bp Feature: domain Description: TIGR00275 Location: 26326-27556 bp Feature: domain Description: TIGR00275 Location: 26326-27556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4243 (Uncharacterized membrane protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), TIGR00275 (flavoprotein, HI0933 family)

Seq: JAAHHZ010000377.1 Moorea sp. SIO4A5 4A5_NODE_377, whole genome shotgun sequence (4618 bp)
Overview 1 RT 1: 297-4383 bp Neighborhood of RT #1 [297, 4616] RVT_N RVT-GII GIIM McrA COG3019 SufI Feature: gene Location: 297-482 bp Feature: gene Location: 717-2393 bp Feature: RT Description: RVT_N Location: 753-999 bp Feature: RT Description: RVT_N Location: 753-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041-16 92 bp Feature: domain Description: GIIM Note: maturase Location: 1779-2004 bp Feature: domain Description: GIIM Note: maturase Location: 1779-2004 bp Feature: domain Description: McrA Location: 2052-2355 bp Feature: domain Description: McrA Location: 2052-2355 bp Feature: gene Location: 3073-3345 bp Feature: domain Description: COG3019 Location: 3076-3337 bp Feature: domain Description: COG3019 Location: 3076-3337 bp Feature: gene Location: 3426-4616 bp Feature: domain Description: SufI Location: 3444-4383 bp Feature: domain Description: SufI Location: 3444-4383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3019 (Uncharacterized conserved protein ), SufI (COG2132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000426.1 Moorea sp. SIO4A5 4A5_NODE_426, whole genome shotgun sequence (4076 bp)
Overview 1 RT 1: 395-2919 bp Neighborhood of RT #1 [395, 2919] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 395-2254 bp Feature: RT Description: RVT_N Location: 482-728 bp Feature: RT Description: RVT_N Location: 482-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776-1445 bp Feature: domain Description: GIIM Note: maturase Location: 1517-1748 bp Feature: domain Description: GIIM Note: maturase Location: 1517 -17 48 bp Feature: domain Description: HNHc Note: nucleases Location: 1955-2111 bp Feature: domain Description: HNHc Note: nucleases Location: 1955-2111 bp Feature: gene Location: 2363-2731 bp Feature: gene Location: 2734-2919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHHZ010000449.1 Moorea sp. SIO4A5 4A5_NODE_449, whole genome shotgun sequence (3918 bp)
Overview 1 RT 1: 628-3394 bp Neighborhood of RT #1 [628, 3537] excise RVT_N RVT-GII GIIM HNHc Feature: gene Location: 628-1080 bp Feature: domain Description: excise Location: 649-754 bp Feature: domain Description: excise Location: 649-754 bp Feature: gene Location: 1219-1605 bp Feature: gene Location: 1690-3537 bp Feature: RT Description: RVT_N Location: 1753-1999 bp Feature: RT Description: RVT_N Location: 1753-1999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047-2719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047-2719 bp Feature: domain Description: GIIM Note: maturase Location: 2791-3025 bp Feature: domain Description: GIIM Note: maturase Location: 2791-3025 bp Feature: domain Description: HNHc Note: nucleases Location: 3250-3394 bp Feature: domain Description: HNHc Note: nucleases Location: 3250-3394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), excise (TIGR01764)

Seq: JAAHHZ010000046.1 Moorea sp. SIO4A5 4A5_NODE_46, whole genome shotgun sequence (50456 bp)
Overview 1 RT 1: 5956-11119 bp Neighborhood of RT #1 [5956, 11181] YliI OrfB_Zn_ribbon RVT-GII group_II_RT_mat HNHc DDE_Tnp_1_assoc YhhI YhhI RVT_N Feature: gene Location: 5956-7371 bp Feature: domain Description: YliI Location: 6028-7360 bp Feature: domain Description: YliI Location: 6028-7360 bp Feature: gene Location: 7381-7713 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7417-7564 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7417-7564 bp Feature: gene Location: 7772-8953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7853-8138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7853-8138 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8282-8510 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8282-8510 bp Feature: domain Description: HNHc Note: nucleases Location: 8768-8930 bp Feature: domain Description: HNHc Note: nucleases Location: 8768-8930 bp Feature: gene Location: 9512-10825 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 9713-9971 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 9713-9971 bp Feature: domain Description: YhhI Location: 10115-10436 bp Feature: domain Description: YhhI Location: 10115-10436 bp Feature: domain Description: YhhI Location: 10502-10739 bp Feature: domain Description: YhhI Location: 10502-10739 bp Feature: gene Location: 10822-11181 bp Feature: RT Description: RVT_N Location: 10864-11119 bp Feature: RT Description: RVT_N Location: 10864-11119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), YliI (COG2133), OrfB_Zn_ribbon (pfam07282), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)

Seq: JAAHHZ010000488.1 Moorea sp. SIO4A5 4A5_NODE_488, whole genome shotgun sequence (3625 bp)
Overview 1 RT 1: 1-3270 bp Neighborhood of RT #1 [1, 3290] InsQ RVT_N RVT-GII GIIM HNH InsQ Feature: gene Location: 1-336 bp Feature: domain Description: InsQ Location: 13-331 bp Feature: domain Description: InsQ Location: 13-331 bp Feature: gene Location: 601-2364 bp Feature: RT Description: RVT_N Location: 646-892 bp Feature: RT Description: RVT_N Location: 646-892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1603 bp Feature: domain Description: GIIM Note: maturase Location: 1681-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1681-1915 bp Feature: domain Description: HNH Note: nucleases Location: 2161-2293 bp Feature: domain Description: HNH Note: nucleases Location: 2161-2293 bp Feature: gene Location: 2925-3290 bp Feature: domain Description: InsQ Location: 2934-3270 bp Feature: domain Description: InsQ Location: 2934-3270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHHZ010000543.1 Moorea sp. SIO4A5 4A5_NODE_543, whole genome shotgun sequence (3304 bp)
Overview 1 RT 1: 578-3112 bp Neighborhood of RT #1 [578, 3240] RVT_N RVT-GII RVT-GII GIIM McrA OrfB_Zn_ribbon Feature: gene Location: 578-1342 bp Feature: RT Description: RVT_N Location: 626-872 bp Feature: RT Description: RVT_N Location: 626-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1301 bp Feature: gene Location: 1359-2297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374-1566 bp Feature: domain Description: GIIM Note: maturase Location: 1647-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1647-1878 bp Feature: domain Description: McrA Location: 1968-2253 bp Feature: domain Description: McrA Location: 1968-2253 bp Feature: gene Location: 2479-2694 bp Feature: gene Location: 2935-3240 bp Feature: domain Description: OrfB_Zn_ribbon Location: 2941-3112 bp Feature: domain Description: OrfB_Zn_ribbon Location: 2941-3112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), OrfB_Zn_ribbon (pfam07282)

Seq: JAAHHZ010000546.1 Moorea sp. SIO4A5 4A5_NODE_546, whole genome shotgun sequence (3288 bp)
Overview 1 RT 1: 147-3285 bp Neighborhood of RT #1 [147, 3285] RVT_N RVT-GII GIIM McrA Feature: gene Location: 147-293 bp Feature: gene Location: 499-681 bp Feature: gene Location: 842-2584 bp Feature: RT Description: RVT_N Location: 881-1127 bp Feature: RT Description: RVT_N Location: 881-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-1820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-1820 bp Feature: domain Description: GIIM Note: maturase Location: 1901-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1901-2135 bp Feature: domain Description: McrA Location: 2225-2513 bp Feature: domain Description: McrA Location: 22 25-2513 bp Feature: gene Location: 3145-3285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000598.1 Moorea sp. SIO4A5 4A5_NODE_598, whole genome shotgun sequence (3020 bp)
Overview 1 RT 1: 421-3017 bp Neighborhood of RT #1 [421, 3017] RVT_N RVT-GII GIIM McrA Feature: gene Location: 421-642 bp Feature: gene Location: 624-818 bp Feature: gene Location: 935-2449 bp Feature: RT Description: RVT_N Location: 974-1220 bp Feature: RT Description: RVT_N Location: 974-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271-1862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2048 bp Feature: domain Description: GIIM Note: maturase Location: 1919-2048 bp Feature: domain Description: McrA Location: 2114-2420 bp Feature: domain Description: McrA Location: 2114-2420 bp Feature: gene Location: 2799-3017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHZ010000066.1 Moorea sp. SIO4A5 4A5_NODE_66, whole genome shotgun sequence (37652 bp)
Overview 1 RT 1: 34118-37650 bp Neighborhood of RT #1 [34118, 37649] PhnE PhnE PhnE RVT_N RVT-GII Feature: gene Location: 34118-35752 bp Feature: domain Description: PhnE Location: 34169-34928 bp Feature: domain Description: PhnE Location: 34169-34928 bp Feature: domain Description: PhnE Location: 34931-35192 bp Feature: domain Description: PhnE Location: 34931-35192 bp Feature: domain Description: PhnE Location: 35252-35726 bp Feature: domain Description: PhnE Location: 35252-35726 bp Feature: gene Location: 36034-36261 bp Feature: gene Location: 36660-37649 bp Feature: RT Description: RVT_N Location: 36723-36969 bp Feature: RT Description: RVT_N Location: 36723-36969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37017-37650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37017-37650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhnE (TIGR01097), RVT_N (pfam13655), RVT-GII

Seq: JAAHHZ010000098.1 Moorea sp. SIO4A5 4A5_NODE_98, whole genome shotgun sequence (23603 bp)
Overview 1 RT 1: 5717-8920 bp Neighborhood of RT #1 [5717, 8920] RVT_N RVT-GII GIIM McrA Feature: gene Location: 5717-5845 bp Feature: gene Location: 5928-6137 bp Feature: gene Location: 6414-7937 bp Feature: RT Description: RVT_N Location: 6441-6687 bp Feature: RT Description: RVT_N Location: 6441-6687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6738-7341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6738-7341 bp Feature: domain Description: GIIM Note: maturase Location: 7398-7587 bp Feature: domain Description: GIIM Note: maturase Location: 7398-7587 bp Feature: domain Description: McrA Location: 7596-7899 bp Feature: domain Description: McrA Location: 7596-7899 bp Feature: gene Location: 8113-8595 bp Feature: gene Location: 8762-8920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)