myRT

myRT report for GCA_010672015.1_ASM1067201v1

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Seq: JAAHID010001042.1 Okeania sp. SIO4D6 4D6_NODE_1042, whole genome shotgun sequence (2330 bp)
Overview 1 RT 1: 237-2019 bp Neighborhood of RT #1 [237, 2120] RVT_N RVT-GII GIIM McrA Feature: gene Location: 237-2120 bp Feature: domain Description: RVT_N Location: 354-597 bp Feature: domain Description: RVT_N Location: 354-597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1 338 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1644 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 0-1 644 bp Feature: domain Description: McrA Location: 1728-2019 bp Feature: domain Description: McrA Location: 1 728-201 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHID010001333.1 Okeania sp. SIO4D6 4D6_NODE_1333, whole genome shotgun sequence (1956 bp)
Overview 1 RT 1: 94-1856 bp Neighborhood of RT #1 [94, 1945] RVT-GII OrfB_Zn_ribbon Beta-lactamase2 Feature: gene Location: 94-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106-355 bp Feature: gene Location: 582-875 bp Feature: domain Description: OrfB_Zn_ribbon Location: 654-786 bp Feature: domain Description: OrfB_Zn_ribbon Location: 654-786 bp Feature: gene Location: 959-1945 bp Feature: domain Description: Beta-lactamase2 Location: 1250-1856 bp Feature: domain Description: Beta-lactamase2 Location: 12 50-1856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, OrfB_Zn_ribbon (pfam07282), Beta-lactamase2 (pfam13354)

Seq: JAAHID010001538.1 Okeania sp. SIO4D6 4D6_NODE_1538, whole genome shotgun sequence (1738 bp)
Overview 1 RT 1: 442-1477 bp Neighborhood of RT #1 [442, 1512] RVT-GII GIIM McrA Feature: gene Location: 442-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-772 bp Feature: domain Description: GIIM Note: maturase Location: 871-1105 bp Feature: domain Description: GIIM Note: maturase Location: 871-1105 bp Feature: domain Description: McrA Location: 1192-1477 bp Feature: domain Description: McrA Location: 1192-1477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHID010001914.1 Okeania sp. SIO4D6 4D6_NODE_1914, whole genome shotgun sequence (1385 bp)
Overview 1 RT 1: 100-1253 bp Neighborhood of RT #1 [100, 1384] RVT_N RVT-GII RVT-GII Feature: gene Location: 100-1005 bp Feature: domain Description: RVT_N Location: 268-511 bp Feature: domain Description: RVT_N Location: 268-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-94 0 bp Feature: gene Location: 983-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHID010001930.1 Okeania sp. SIO4D6 4D6_NODE_1930, whole genome shotgun sequence (1374 bp)
Overview 1 RT 1: 324-1371 bp Neighborhood of RT #1 [324, 1373] RVT-UG18 Feature: gene Location: 324-797 bp Feature: gene Location: 885-1373 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1089-1371 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 1089-1371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: JAAHID010000204.1 Okeania sp. SIO4D6 4D6_NODE_204, whole genome shotgun sequence (4458 bp)
Overview 1 RT 1: 2783-4277 bp Neighborhood of RT #1 [2783, 4405] BHL RVT-GII GIIM Feature: gene Location: 2783-3070 bp Feature: domain Description: BHL Location: 2786-3050 bp Feature: domain Description: BHL Location: 2786 -3050 bp Feature: gene Location: 3513-3686 bp Feature: gene Location: 3761-4405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848-4034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848-4034 bp Feature: domain Description: GIIM Note: maturase Location: 4091-4277 bp Feature: domain Description: GIIM Note: maturase Location: 4091-4277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT-GII, GIIM (pfam08388)

Seq: JAAHID010000205.1 Okeania sp. SIO4D6 4D6_NODE_205, whole genome shotgun sequence (4456 bp)
Overview 1 RT 1: 335-4318 bp Neighborhood of RT #1 [335, 4455] Ycf66_N RVT_N RVT-GII GIIM Feature: gene Location: 335-1519 bp Feature: domain Description: Ycf66_N Location: 404-626 bp Feature: domain Description: Ycf66_N Location: 404-626 bp Feature: gene Location: 2998-4455 bp Feature: domain Description: RVT_N Location: 3040-3265 bp Feature: domain Description: RVT_N Location: 3040-3265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3307-3985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3307 -3985 bp Feature: domain Description: GIIM Note: maturase Location: 4084-4318 bp Feature: domain Description: GIIM Note: maturase Location: 4084-4318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ycf66_N (pfam07444), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHID010000238.1 Okeania sp. SIO4D6 4D6_NODE_238, whole genome shotgun sequence (4257 bp)
Overview 1 RT 1: 534-4237 bp Neighborhood of RT #1 [534, 4254] RVT-UG4 InsQ RVT-UG4 DUF4351 Feature: gene Location: 534-1241 bp Feature: gene Location: 1538-1996 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1565-1907 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1565-1907 bp Feature: gene Location: 2005-3207 bp Feature: domain Description: InsQ Location: 2008-3115 bp Feature: domain Description: InsQ Location: 2008 -3115 bp Feature: gene Location: 3274-3726 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3535-3700 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3535-3700 bp Feature: gene Location: 3925-4254 bp Feature: domain Description: DUF4351 Location: 4069-4237 bp Feature: domain Description: DUF4351 Location: 4069-4237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsQ (COG0675), DUF4351 (pfam14261)

Seq: JAAHID010000255.1 Okeania sp. SIO4D6 4D6_NODE_255, whole genome shotgun sequence (4194 bp)
Overview 1 RT 1: 1-3883 bp Neighborhood of RT #1 [1, 3897] KOG4254 RVT-GII RNase_T2_prok HpnA Feature: gene Location: 1-915 bp Feature: domain Description: KOG4254 Location: 10-904 bp Feature: domain Description: KOG4254 Location: 10-9 04 bp Feature: gene Location: 1142-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1460 bp Feature: gene Location: 1942-2910 bp Feature: domain Description: RNase_T2_prok Location: 2293-2836 bp Feature: domain Description: RNase_T2_prok Location: 229 3-2836 bp Feature: gene Location: 2914-3897 bp Feature: domain Description: HpnA Location: 2917-3883 bp Feature: domain Description: HpnA Location: 29 17-3883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4254 (KOG4254, Phytoene desaturase ), RVT-GII, RNase_T2_prok (cd01062), HpnA (TIGR03466)

Seq: JAAHID010000325.1 Okeania sp. SIO4D6 4D6_NODE_325, whole genome shotgun sequence (3849 bp)
Overview 1 RT 1: 1827-3837 bp Neighborhood of RT #1 [1827, 3848] InsQ InsQ RVT-GII GIIM McrA Feature: gene Location: 1827-2210 bp Feature: domain Description: InsQ Location: 1833-2178 bp Feature: domain Description: InsQ Location: 1833-2178 bp Feature: gene Location: 2292-2834 bp Feature: domain Description: InsQ Location: 2334-2817 bp Feature: domain Description: InsQ Location: 2334-2817 bp Feature: gene Location: 3054-3848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057-3171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057-3171 bp Feature: domain Description: GIIM Note: maturase Location: 3243-3477 bp Feature: domain Description: GIIM Note: maturase Location: 3243-3477 bp Feature: domain Description: McrA Location: 3522-3837 bp Feature: domain Description: McrA Location: 3522-3837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHID010000362.1 Okeania sp. SIO4D6 4D6_NODE_362, whole genome shotgun sequence (3719 bp)
Overview 1 RT 1: 1242-3704 bp Neighborhood of RT #1 [1242, 3718] RVT-UG4 RVT-UG4 Feature: gene Location: 1242-1532 bp Feature: gene Location: 1707-2072 bp Feature: gene Location: 2872-3348 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2875-3028 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2875-3028 bp Feature: gene Location: 3518-3718 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3533-3704 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3533-3704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHID010000411.1 Okeania sp. SIO4D6 4D6_NODE_411, whole genome shotgun sequence (3553 bp)
Overview 1 RT 1: 14-1847 bp Neighborhood of RT #1 [14, 1927] RVT-GII nusB COG2928 Feature: gene Location: 14-226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-224 bp Feature: gene Location: 339-962 bp Feature: domain Description: nusB Location: 351-948 bp Feature: domain Description: nusB Location: 351-948 bp Feature: gene Location: 1208-1927 bp Feature: domain Description: COG2928 Location: 1226-1847 bp Feature: domain Description: COG2928 Location: 12 26-1847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nusB (TIGR01951), COG2928 (Uncharacterized membrane protein )

Seq: JAAHID010000057.1 Okeania sp. SIO4D6 4D6_NODE_57, whole genome shotgun sequence (6710 bp)
Overview 1 RT 1: 212-5369 bp Neighborhood of RT #1 [212, 5369] TcA_TcB_BD YkfC RVT-GII GIIM Feature: gene Location: 212-1789 bp Feature: domain Description: TcA_TcB_BD Location: 968-1781 bp Feature: domain Description: TcA_TcB_BD Location: 968-1781 bp Feature: gene Location: 2853-4295 bp Feature: domain Description: YkfC Location: 2907-3081 bp Feature: domain Description: YkfC Location: 2907-3081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3156-3810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3156-3810 bp Feature: domain Description: GIIM Note: maturase Location: 3888-4122 bp Feature: domain Description: GIIM Note: maturase Location: 3888-4122 bp Feature: gene Location: 4731-5027 bp Feature: gene Location: 5109-5369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcA_TcB_BD (pfam18276), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHID010000718.1 Okeania sp. SIO4D6 4D6_NODE_718, whole genome shotgun sequence (2824 bp)
Overview 1 RT 1: 1649-2815 bp Neighborhood of RT #1 [1649, 2817] RVT_N RVT-GII Feature: gene Location: 1649-1924 bp Feature: gene Location: 2103-2249 bp Feature: gene Location: 2311-2817 bp Feature: domain Description: RVT_N Location: 2314-2512 bp Feature: domain Description: RVT_N Location: 2314 -2512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2560-2815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2560-2815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHID010000079.1 Okeania sp. SIO4D6 4D6_NODE_79, whole genome shotgun sequence (5943 bp)
Overview 1 RT 1: 273-4238 bp Neighborhood of RT #1 [273, 5365] RVT-GII AAA_35 COG5635 Feature: gene Location: 273-530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-456 bp Feature: gene Location: 828-1529 bp Feature: gene Location: 2477-5365 bp Feature: domain Description: AAA_35 Location: 2507-3539 bp Feature: domain Description: AAA_35 Location: 2507-3539 bp Feature: domain Description: COG5635 Location: 3833-4238 bp Feature: domain Description: COG5635 Location: 3833-4238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain )