myRT

myRT report for GCA_010672165.1_ASM1067216v1

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Seq: JAAHHN010000116.1 Spirulina sp. SIO3F2 3F2_NODE_116, whole genome shotgun sequence (22309 bp)
Overview 1 RT 1: 7096-12339 bp Neighborhood of RT #1 [7096, 12365] YfmG YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 7096-7935 bp Feature: domain Description: YfmG Location: 7150-7912 bp Feature: domain Description: YfmG Location: 71 50-791 2 bp Feature: gene Location: 7980-8237 bp Feature: domain Description: YfmG Location: 7995-8115 bp Feature: domain Description: YfmG Location: 7995-81 1 5 bp Feature: gene Location: 8241-9305 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8451-9090 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8451 -9090 bp Feature: gene Location: 9302-9649 bp Feature: domain Description: Avd_like Location: 9320-9626 bp Feature: domain Description: Avd_like Location: 9320-9626 bp Feature: gene Location: 9735-12365 bp Feature: domain Description: YfmG Location: 11544-12339 bp Feature: domain Description: YfmG Location: 1 1 544-1 2339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAAHHN010000127.1 Spirulina sp. SIO3F2 3F2_NODE_127, whole genome shotgun sequence (21134 bp)
Overview 1 RT 1: 189-5740 bp Neighborhood of RT #1 [189, 5955] RVT_N RVT-GII GIIM McrA SpoVK Feature: gene Location: 189-1700 bp Feature: domain Description: RVT_N Location: 225-468 bp Feature: domain Description: RVT_N Location: 2 2 5-468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 -1116 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1365 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1365 bp Feature: domain Description: McrA Location: 1389-1671 bp Feature: domain Description: McrA Location: 1389-1671 bp Feature: gene Location: 2273-3904 bp Feature: gene Location: 4030-5955 bp Feature: domain Description: SpoVK Location: 5185-5740 bp Feature: domain Description: SpoVK Location: 5185-5740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), SpoVK (COG0464)

Seq: JAAHHN010000240.1 Spirulina sp. SIO3F2 3F2_NODE_240, whole genome shotgun sequence (9794 bp)
Overview 1 RT 1: 303-1711 bp Neighborhood of RT #1 [303, 1711] RVT-Retrons HTH_XRE Feature: gene Location: 303-1178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 447-957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 447-957 bp Feature: gene Location: 1181-1498 bp Feature: domain Description: HTH_XRE Location: 1196-1358 bp Feature: domain Description: HTH_XRE Location: 1196-13 58 bp Feature: gene Location: 1529-1711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: JAAHHN010000318.1 Spirulina sp. SIO3F2 3F2_NODE_318, whole genome shotgun sequence (6236 bp)
Overview 1 RT 1: 864-6233 bp Neighborhood of RT #1 [864, 6233] Uma2 chaperone_ClpB chaperone_ClpB RVT-UG7 Feature: gene Location: 864-1292 bp Feature: domain Description: Uma2 Location: 897-1287 bp Feature: domain Description: Uma2 Location: 897-1287 bp Feature: gene Location: 1430-4474 bp Feature: domain Description: chaperone_ClpB Location: 1457-3698 bp Feature: domain Description: chaperone_ClpB Location: 14 57-3698 bp Feature: domain Description: chaperone_ClpB Location: 3863-4214 bp Feature: domain Description: chaperone_ClpB Location: 3863-4 214 bp Feature: gene Location: 4987-6078 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4993-5245 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4 993-524 5 bp Feature: gene Location: 6090-6233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), chaperone_ClpB (TIGR03346), RVT-UG7