myRT

myRT report for GCA_010672295.1_ASM1067229v1

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Seq: JAAHGW010000012.1 Okeania sp. SIO2G4 2G4_NODE_12, whole genome shotgun sequence (144611 bp)
Overview 1 RT 1: 130143-137647 bp Neighborhood of RT #1 [130143, 137647] metH RVT-UG18 RVT-UG4 Feature: gene Location: 130143-133817 bp Feature: domain Description: metH Location: 130212-133812 bp Feature: domain Description: metH Location: 1 3021 2-1 3381 2 bp Feature: gene Location: 134265-134738 bp Feature: gene Location: 134826-135371 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 135174-135357 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 1 351 74-1 35357 bp Feature: gene Location: 135541-136017 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 135544-135697 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 35544-1 35697 bp Feature: gene Location: 136817-137182 bp Feature: gene Location: 137357-137647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT metH (TIGR02082), RVT-UG18, RVT-UG4

Seq: JAAHGW010000122.1 Okeania sp. SIO2G4 2G4_NODE_122, whole genome shotgun sequence (22104 bp)
Overview 1 RT 1: 571-6351 bp Neighborhood of RT #1 [571, 6351] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 571-960 bp Feature: gene Location: 1235-1717 bp Feature: domain Description: ThyX Location: 1238-1694 bp Feature: domain Description: ThyX Location: 12 38-1694 bp Feature: gene Location: 1916-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2 186 bp Feature: domain Description: GIIM Note: maturase Location: 2261-2492 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 61-2 492 bp Feature: domain Description: McrA Location: 2567-2852 bp Feature: domain Description: McrA Location: 2 567-2 852 bp Feature: gene Location: 2841-3746 bp Feature: domain Description: RVT_N Location: 3009-3252 bp Feature: domain Description: RVT_N Location: 3009-32 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300-3681 bp Feature: gene Location: 4852-5247 bp Feature: domain Description: RVT_N Location: 4888-5134 bp Feature: domain Description: RVT_N Location: 4888-5134 bp Feature: gene Location: 6163-6351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHGW010000140.1 Okeania sp. SIO2G4 2G4_NODE_140, whole genome shotgun sequence (18038 bp)
Overview 1 RT 1: 9049-16956 bp Neighborhood of RT #1 [9049, 16956] UvrD PRK13922 RVT-GII GIIM McrA PRK02504 Feature: gene Location: 9049-11430 bp Feature: domain Description: UvrD Location: 9178-11332 bp Feature: domain Description: UvrD Location: 9178-113 3 2 bp Feature: gene Location: 12620-13057 bp Feature: domain Description: PRK13922 Location: 12662-12914 bp Feature: domain Description: PRK13 922 Location: 12662-12914 bp Feature: gene Location: 13327-14397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13330-13657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 3 0-13 657 bp Feature: domain Description: GIIM Note: maturase Location: 13756-13990 bp Feature: domain Description: GIIM Note: maturase Location: 13 756-13 990 bp Feature: domain Description: McrA Location: 14077-14362 bp Feature: domain Description: McrA Location: 14077-143 62 bp Feature: gene Location: 15027-16607 bp Feature: domain Description: PRK02504 Location: 15039-16566 bp Feature: domain Description: PRK02504 Location: 1503 9-16566 bp Feature: gene Location: 16657-16956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), PRK13922 (rod shape-determining protein MreC; Provisional), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK02504 (NAD(P)H-quinone oxidoreductase subunit N)

Seq: JAAHGW010000016.1 Okeania sp. SIO2G4 2G4_NODE_16, whole genome shotgun sequence (233313 bp)
Overview 1 RT 1: 141800-148562 bp Neighborhood of RT #1 [141800, 148562] DinB dam RVT_N RVT-GII GIIM Ycf66_N Feature: gene Location: 141800-141988 bp Feature: domain Description: DinB Location: 141809-141983 bp Feature: domain Description: DinB Location: 14 1809-14 1983 bp Feature: gene Location: 142247-143044 bp Feature: domain Description: dam Location: 142289-143033 bp Feature: domain Description: dam Location: 14 2289-14 3033 bp Feature: gene Location: 143478-144938 bp Feature: domain Description: RVT_N Location: 143520-143745 bp Feature: domain Description: RVT_N Location: 14 3520-14 374 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143787-144465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 3787-14 4 4 65 bp Feature: domain Description: GIIM Note: maturase Location: 144564-144798 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 564 -14 4 798 bp Feature: gene Location: 146417-147565 bp Feature: domain Description: Ycf66_N Location: 146450-146672 bp Feature: domain Description: Ycf66_N Location: 14 64 50-14 6672 bp Feature: gene Location: 148359-148562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinB (pfam05163), dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Ycf66_N (pfam07444)

Seq: JAAHGW010000175.1 Okeania sp. SIO2G4 2G4_NODE_175, whole genome shotgun sequence (12467 bp)
Overview 1 RT 1: 438-2271 bp Neighborhood of RT #1 [438, 2351] RVT-GII nusB COG2928 Feature: gene Location: 438-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-648 bp Feature: gene Location: 763-1386 bp Feature: domain Description: nusB Location: 775-1372 bp Feature: domain Description: nusB Location: 775 -1372 bp Feature: gene Location: 1632-2351 bp Feature: domain Description: COG2928 Location: 1650-2271 bp Feature: domain Description: COG2928 Location: 165 0-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nusB (TIGR01951), COG2928 (Uncharacterized membrane protein )

Seq: JAAHGW010000018.1 Okeania sp. SIO2G4 2G4_NODE_18, whole genome shotgun sequence (109832 bp)
Overview 1 RT 1: 70645-76525 bp Neighborhood of RT #1 [70645, 76572] AAA_35 COG5635 RVT-GII COG3503 COG3503 Feature: gene Location: 70645-73533 bp Feature: domain Description: AAA_35 Location: 70675-71707 bp Feature: domain Description: AAA_35 Location: 706 75-71707 bp Feature: domain Description: COG5635 Location: 72001-72406 bp Feature: domain Description: COG56 35 Location: 72001-72406 bp Feature: gene Location: 74481-75182 bp Feature: gene Location: 75480-75737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75483-75663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75483-756 6 3 bp Feature: gene Location: 76011-76211 bp Feature: domain Description: COG3503 Location: 76014-76140 bp Feature: domain Description: COG3503 Location: 76 014-76 140 bp Feature: gene Location: 76249-76572 bp Feature: domain Description: COG3503 Location: 76273-76525 bp Feature: domain Description: COG3503 Location: 76 273-76 525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain ), RVT-GII, COG3503 (Uncharacterized membrane protein )

Seq: JAAHGW010000182.1 Okeania sp. SIO2G4 2G4_NODE_182, whole genome shotgun sequence (11670 bp)
Overview 1 RT 1: 3-5537 bp Neighborhood of RT #1 [3, 5537] TcA_TcB_BD YkfC RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: gene Location: 277-1854 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: gene Location: 2918-4360 bp Feature: domain Description: YkfC Location: 2972-3146 bp Feature: domain Description: YkfC Location: 297 2-3146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-3875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-387 5 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: gene Location: 4787-5092 bp Feature: gene Location: 5232-5537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcA_TcB_BD (pfam18276), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHGW010000209.1 Okeania sp. SIO2G4 2G4_NODE_209, whole genome shotgun sequence (8414 bp)
Overview 1 RT 1: 3-1985 bp Neighborhood of RT #1 [3, 1985] RVT-GII RVT_N RVT-GII Feature: gene Location: 3-215 bp Feature: gene Location: 360-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-636 bp Feature: gene Location: 817-1323 bp Feature: domain Description: RVT_N Location: 820-1018 bp Feature: domain Description: RVT_N Location: 8 20-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1321 bp Feature: gene Location: 1385-1531 bp Feature: gene Location: 1710-1985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT_N (pfam13655)

Seq: JAAHGW010000292.1 Okeania sp. SIO2G4 2G4_NODE_292, whole genome shotgun sequence (2465 bp)
Overview 1 RT 1: 1-2275 bp Neighborhood of RT #1 [1, 2275] RVT_N RVT-GII GIIM McrA Feature: gene Location: 1-1848 bp Feature: domain Description: RVT_N Location: 118-361 bp Feature: domain Description: RVT_N Location: 118-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409 -1102 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: McrA Location: 1492-1777 bp Feature: domain Description: McrA Location: 149 2-1777 bp Feature: gene Location: 2075-2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGW010000055.1 Okeania sp. SIO2G4 2G4_NODE_55, whole genome shotgun sequence (41699 bp)
Overview 1 RT 1: 5973-11396 bp Neighborhood of RT #1 [5973, 11437] Beta-lactamase2 OrfB_Zn_ribbon RVT-GII HTH_OrfB_IS605 chaperone_ClpB Feature: gene Location: 5973-7277 bp Feature: domain Description: Beta-lactamase2 Location: 6582-7188 bp Feature: domain Description: Beta-lactamase2 Location: 6582-7188 bp Feature: gene Location: 7361-7654 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7433-7565 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7433-7565 bp Feature: gene Location: 7855-8142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867-8116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867-8116 bp Feature: gene Location: 8454-8699 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8457-8586 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8457-8586 bp Feature: gene Location: 8825-11437 bp Feature: domain Description: chaperone_ClpB Location: 8852-11396 bp Feature: domain Description: chaperone_ClpB Location: 8852-11396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase2 (pfam13354), OrfB_Zn_ribbon (pfam07282), RVT-GII, HTH_OrfB_IS605 (pfam12323), chaperone_ClpB (TIGR03346)

Seq: JAAHGW010000006.1 Okeania sp. SIO2G4 2G4_NODE_6, whole genome shotgun sequence (71308 bp)
Overview 1 RT 1: 38354-41143 bp Neighborhood of RT #1 [38354, 41163] RVT-GII GIIM BHL Feature: gene Location: 38354-38647 bp Feature: gene Location: 39040-39210 bp Feature: gene Location: 39541-40185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-39814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-39814 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40057 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40057 bp Feature: gene Location: 40260-40433 bp Feature: gene Location: 40876-41163 bp Feature: domain Description: BHL Location: 40879-41143 bp Feature: domain Description: BHL Location: 40879-411 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BHL (smart00411)

Seq: JAAHGW010000073.1 Okeania sp. SIO2G4 2G4_NODE_73, whole genome shotgun sequence (33530 bp)
Overview 1 RT 1: 9151-16137 bp Neighborhood of RT #1 [9151, 16151] carot_isom RVT-GII RNase_T2_prok HpnA Feature: gene Location: 9151-10773 bp Feature: gene Location: 11670-13169 bp Feature: domain Description: carot_isom Location: 11682-13137 bp Feature: domain Description: carot_isom Location: 11682-13137 bp Feature: gene Location: 13396-13749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13429-13714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13429-13714 bp Feature: gene Location: 14196-15164 bp Feature: domain Description: RNase_T2_prok Location: 14547-15090 bp Feature: domain Description: RNase_T2_prok Location: 14547-15090 bp Feature: gene Location: 15168-16151 bp Feature: domain Description: HpnA Location: 15171-16137 bp Feature: domain Description: HpnA Location: 15171-16137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carot_isom (TIGR02730), RVT-GII, RNase_T2_prok (cd01062), HpnA (TIGR03466)

Seq: JAAHGW010000009.1 Okeania sp. SIO2G4 2G4_NODE_9, whole genome shotgun sequence (258666 bp)
Overview 1 RT 1: 213844-220350 bp Neighborhood of RT #1 [213844, 220350] PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 RVT-UG4 InsQ RVT-UG4 Feature: gene Location: 213844-214755 bp Feature: domain Description: PDDEXK_2 Location: 213862-214540 bp Feature: domain Description: PDDEXK_2 Location: 213 862-214540 bp Feature: domain Description: DUF4351 Location: 214570-214741 bp Feature: domain Description: DUF4351 Location: 214570-214741 bp Feature: gene Location: 214770-215690 bp Feature: domain Description: PDDEXK_2 Location: 214788-215490 bp Feature: domain Description: PDDEXK_2 Location: 214788-215490 bp Feature: domain Description: DUF4351 Location: 215508-215673 bp Feature: domain Description: DUF4351 Location: 215508-215673 bp Feature: gene Location: 215889-216341 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 216150-216315 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 216150-216315 bp Feature: gene Location: 216408-217610 bp Feature: domain Description: InsQ Location: 216411-217518 bp Feature: domain Description: InsQ Location: 216411-217518 bp Feature: gene Location: 217619-218077 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 217646-217988 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 217646-217988 bp Feature: gene Location: 218374-219081 bp Feature: gene Location: 220015-220350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), DUF4351 (pfam14261), RVT-UG4, InsQ (COG0675)