myRT

myRT report for GCA_010672305.1_ASM1067230v1

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Seq: JAAHGX010000001.1 Okeania sp. SIO2G5 2G5_NODE_1, whole genome shotgun sequence (126613 bp)
Overview 1 RT 1: 38354-41143 bp Neighborhood of RT #1 [38354, 41163] RVT-GII GIIM BHL Feature: gene Location: 38354-38647 bp Feature: gene Location: 39040-39210 bp Feature: gene Location: 39541-40185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-39814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-3981 4 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40057 bp Feature: domain Description: GIIM Note: maturase Location: 39871 -40057 bp Feature: gene Location: 40260-40433 bp Feature: gene Location: 40876-41163 bp Feature: domain Description: BHL Location: 40879-41143 bp Feature: domain Description: BHL Location: 40879-41 1 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BHL (smart00411)

Seq: JAAHGX010000113.1 Okeania sp. SIO2G5 2G5_NODE_113, whole genome shotgun sequence (22187 bp)
Overview 1 RT 1: 20203-22185 bp Neighborhood of RT #1 [20203, 22185] RVT_N RVT-GII RVT-GII Feature: gene Location: 20203-20478 bp Feature: gene Location: 20657-20803 bp Feature: gene Location: 20865-21371 bp Feature: domain Description: RVT_N Location: 20868-21066 bp Feature: domain Description: RVT_N Location: 2 0868-2 1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21114-21369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1114-2 1369 bp Feature: gene Location: 21523-21828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21553-21799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1553-2 1799 bp Feature: gene Location: 21973-22185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHGX010000114.1 Okeania sp. SIO2G5 2G5_NODE_114, whole genome shotgun sequence (22104 bp)
Overview 1 RT 1: 571-6351 bp Neighborhood of RT #1 [571, 6351] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 571-960 bp Feature: gene Location: 1235-1717 bp Feature: domain Description: ThyX Location: 1238-1694 bp Feature: domain Description: ThyX Location: 123 8-1694 bp Feature: gene Location: 1916-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2186 bp Feature: domain Description: GIIM Note: maturase Location: 2261-2492 bp Feature: domain Description: GIIM Note: maturase Location: 2261-2492 bp Feature: domain Description: McrA Location: 2567-2852 bp Feature: domain Description: McrA Location: 2567-2852 bp Feature: gene Location: 2841-3746 bp Feature: domain Description: RVT_N Location: 3009-3252 bp Feature: domain Description: RVT_N Location: 3 009-3 252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 00-3 681 bp Feature: gene Location: 4852-5247 bp Feature: domain Description: RVT_N Location: 4888-5134 bp Feature: domain Description: RVT_N Location: 4888-513 4 bp Feature: gene Location: 6163-6351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHGX010000115.1 Okeania sp. SIO2G5 2G5_NODE_115, whole genome shotgun sequence (21855 bp)
Overview 1 RT 1: 14124-21628 bp Neighborhood of RT #1 [14124, 21628] metH RVT-UG18 RVT-UG4 Feature: gene Location: 14124-17798 bp Feature: domain Description: metH Location: 14193-17793 bp Feature: domain Description: metH Location: 14 193-17793 bp Feature: gene Location: 18246-18719 bp Feature: gene Location: 18807-19352 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 19155-19338 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 19155-19338 bp Feature: gene Location: 19522-19998 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19525-19678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19525-19678 bp Feature: gene Location: 20798-21163 bp Feature: gene Location: 21338-21628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT metH (TIGR02082), RVT-UG18, RVT-UG4

Seq: JAAHGX010000117.1 Okeania sp. SIO2G5 2G5_NODE_117, whole genome shotgun sequence (21546 bp)
Overview 1 RT 1: 1083-8892 bp Neighborhood of RT #1 [1083, 8990] PRK02504 RVT-GII GIIM McrA PRK13922 UvrD Feature: gene Location: 1083-1382 bp Feature: gene Location: 1432-3012 bp Feature: domain Description: PRK02504 Location: 1444-2971 bp Feature: domain Description: PRK025 04 Location: 1444-2971 bp Feature: gene Location: 3642-4712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3645-3972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3645 -3972 bp Feature: domain Description: GIIM Note: maturase Location: 4071-4305 bp Feature: domain Description: GIIM Note: maturase Location: 4071-4305 bp Feature: domain Description: McrA Location: 4392-4677 bp Feature: domain Description: McrA Location: 4392-4677 bp Feature: gene Location: 4982-5419 bp Feature: domain Description: PRK13922 Location: 5024-5276 bp Feature: domain Description: PRK13922 Location: 5 024-5 276 bp Feature: gene Location: 6609-8990 bp Feature: domain Description: UvrD Location: 6738-8892 bp Feature: domain Description: UvrD Location: 6738-8892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02504 (NAD(P)H-quinone oxidoreductase subunit N), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK13922 (rod shape-determining protein MreC; Provisional), UvrD (COG0210)

Seq: JAAHGX010000173.1 Okeania sp. SIO2G5 2G5_NODE_173, whole genome shotgun sequence (12383 bp)
Overview 1 RT 1: 354-2187 bp Neighborhood of RT #1 [354, 2267] RVT-GII nusB COG2928 Feature: gene Location: 354-566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357-56 4 bp Feature: gene Location: 679-1302 bp Feature: domain Description: nusB Location: 691-1288 bp Feature: domain Description: nusB Location: 6 91-1288 bp Feature: gene Location: 1548-2267 bp Feature: domain Description: COG2928 Location: 1566-2187 bp Feature: domain Description: COG2928 Location: 156 6 -2187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nusB (TIGR01951), COG2928 (Uncharacterized membrane protein )

Seq: JAAHGX010000181.1 Okeania sp. SIO2G5 2G5_NODE_181, whole genome shotgun sequence (11062 bp)
Overview 1 RT 1: 3-5434 bp Neighborhood of RT #1 [3, 5434] TcA_TcB_BD YkfC RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: gene Location: 277-1854 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: gene Location: 2918-4360 bp Feature: domain Description: YkfC Location: 2972-3146 bp Feature: domain Description: YkfC Location: 297 2-3146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-3875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-387 5 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: gene Location: 4787-5092 bp Feature: gene Location: 5174-5434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcA_TcB_BD (pfam18276), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHGX010000020.1 Okeania sp. SIO2G5 2G5_NODE_20, whole genome shotgun sequence (109687 bp)
Overview 1 RT 1: 70644-76524 bp Neighborhood of RT #1 [70644, 76571] AAA_35 COG5635 RVT-GII COG3503 COG3503 Feature: gene Location: 70644-73532 bp Feature: domain Description: AAA_35 Location: 70674-71706 bp Feature: domain Description: AAA_35 Location: 70674-71706 bp Feature: domain Description: COG5635 Location: 72000-72405 bp Feature: domain Description: COG5635 Location: 72000-72405 bp Feature: gene Location: 74480-75181 bp Feature: gene Location: 75479-75736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75482-75662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7548 2-75662 bp Feature: gene Location: 76010-76210 bp Feature: domain Description: COG3503 Location: 76013-76139 bp Feature: domain Description: COG3503 Location: 76013-76139 bp Feature: gene Location: 76248-76571 bp Feature: domain Description: COG3503 Location: 76272-76524 bp Feature: domain Description: COG3503 Location: 76272-76524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain ), RVT-GII, COG3503 (Uncharacterized membrane protein )

Seq: JAAHGX010000273.1 Okeania sp. SIO2G5 2G5_NODE_273, whole genome shotgun sequence (2465 bp)
Overview 1 RT 1: 1-2275 bp Neighborhood of RT #1 [1, 2275] RVT_N RVT-GII GIIM McrA Feature: gene Location: 1-1848 bp Feature: domain Description: RVT_N Location: 118-361 bp Feature: domain Description: RVT_N Location: 118-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409 -1102 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: McrA Location: 1492-1777 bp Feature: domain Description: McrA Location: 149 2-1777 bp Feature: gene Location: 2075-2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGX010000047.1 Okeania sp. SIO2G5 2G5_NODE_47, whole genome shotgun sequence (51728 bp)
Overview 1 RT 1: 37175-44009 bp Neighborhood of RT #1 [37175, 44014] Ycf66_N RVT_N RVT-GII GIIM dam DinB Feature: gene Location: 37175-37489 bp Feature: gene Location: 38249-39397 bp Feature: domain Description: Ycf66_N Location: 38282-38504 bp Feature: domain Description: Ycf66_N Location: 38282-38504 bp Feature: gene Location: 40876-42336 bp Feature: domain Description: RVT_N Location: 40918-41143 bp Feature: domain Description: RVT_N Location: 40918-41143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41185-41863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41185-41863 bp Feature: domain Description: GIIM Note: maturase Location: 41962-42196 bp Feature: domain Description: GIIM Note: maturase Location: 41962-42196 bp Feature: gene Location: 42770-43567 bp Feature: domain Description: dam Location: 42812-43556 bp Feature: domain Description: dam Location: 42812-43556 bp Feature: gene Location: 43826-44014 bp Feature: domain Description: DinB Location: 43835-44009 bp Feature: domain Description: DinB Location: 43835-44009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ycf66_N (pfam07444), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), dam (TIGR00571), DinB (pfam05163)

Seq: JAAHGX010000006.1 Okeania sp. SIO2G5 2G5_NODE_6, whole genome shotgun sequence (284959 bp)
Overview 1 RT 1: 246111-252617 bp Neighborhood of RT #1 [246111, 252617] PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 RVT-UG4 InsQ RVT-UG4 Feature: gene Location: 246111-247022 bp Feature: domain Description: PDDEXK_2 Location: 246129-246807 bp Feature: domain Description: PDDEXK_2 Location: 246129-246807 bp Feature: domain Description: DUF4351 Location: 246837-247008 bp Feature: domain Description: DUF4351 Location: 246837-247008 bp Feature: gene Location: 247037-247957 bp Feature: domain Description: PDDEXK_2 Location: 247055-247757 bp Feature: domain Description: PDDEXK_2 Location: 247055-247757 bp Feature: domain Description: DUF4351 Location: 247775-247940 bp Feature: domain Description: DUF4351 Location: 247775-247940 bp Feature: gene Location: 248156-248608 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 248417-248582 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 248417-248582 bp Feature: gene Location: 248675-249877 bp Feature: domain Description: InsQ Location: 248678-249785 bp Feature: domain Description: InsQ Location: 248678-249785 bp Feature: gene Location: 249886-250344 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 249913-250255 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 249913-250255 bp Feature: gene Location: 250641-251348 bp Feature: gene Location: 252282-252617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), DUF4351 (pfam14261), RVT-UG4, InsQ (COG0675)

Seq: JAAHGX010000060.1 Okeania sp. SIO2G5 2G5_NODE_60, whole genome shotgun sequence (41527 bp)
Overview 1 RT 1: 5841-11264 bp Neighborhood of RT #1 [5841, 11305] Beta-lactamase2 OrfB_Zn_ribbon RVT-GII HTH_OrfB_IS605 chaperone_ClpB Feature: gene Location: 5841-7145 bp Feature: domain Description: Beta-lactamase2 Location: 6450-7056 bp Feature: domain Description: Beta-lactamase2 Location: 6450-7056 bp Feature: gene Location: 7229-7522 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7301-7433 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7301-7433 bp Feature: gene Location: 7723-8010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7735-7984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7735-7984 bp Feature: gene Location: 8322-8567 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8325-8454 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8325-8454 bp Feature: gene Location: 8693-11305 bp Feature: domain Description: chaperone_ClpB Location: 8720-11264 bp Feature: domain Description: chaperone_ClpB Location: 8720-112 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase2 (pfam13354), OrfB_Zn_ribbon (pfam07282), RVT-GII, HTH_OrfB_IS605 (pfam12323), chaperone_ClpB (TIGR03346)

Seq: JAAHGX010000072.1 Okeania sp. SIO2G5 2G5_NODE_72, whole genome shotgun sequence (33530 bp)
Overview 1 RT 1: 9151-16137 bp Neighborhood of RT #1 [9151, 16151] carot_isom RVT-GII RNase_T2_prok HpnA Feature: gene Location: 9151-10773 bp Feature: gene Location: 11670-13169 bp Feature: domain Description: carot_isom Location: 11682-13137 bp Feature: domain Description: carot_isom Location: 11682-13 13 7 bp Feature: gene Location: 13396-13749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13429-13714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 429-13 714 bp Feature: gene Location: 14196-15164 bp Feature: domain Description: RNase_T2_prok Location: 14547-15090 bp Feature: domain Description: RNase_T2_prok Location: 14547-15090 bp Feature: gene Location: 15168-16151 bp Feature: domain Description: HpnA Location: 15171-16137 bp Feature: domain Description: HpnA Location: 15171-1613 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carot_isom (TIGR02730), RVT-GII, RNase_T2_prok (cd01062), HpnA (TIGR03466)