myRT

myRT report for GCA_010672405.1_ASM1067240v1

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Seq: JAAHGQ010001158.1 Symploca sp. SIO2D2 2D2_NODE_1158, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 1217-2950 bp Neighborhood of RT #1 [1217, 2985] COG2442 DUF5615 RVT-UG4 Feature: gene Location: 1217-1549 bp Feature: domain Description: COG2442 Location: 1286-1505 bp Feature: domain Description: COG2442 Location: 1 286-1 505 bp Feature: gene Location: 1542-1928 bp Feature: domain Description: DUF5615 Location: 1551-1782 bp Feature: domain Description: DUF561 5 Location: 1 551 -1 782 bp Feature: gene Location: 2287-2985 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2635-2950 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2635-2950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), DUF5615 (pfam18480), RVT-UG4

Seq: JAAHGQ010000202.1 Symploca sp. SIO2D2 2D2_NODE_202, whole genome shotgun sequence (10947 bp)
Overview 1 RT 1: 8149-10415 bp Neighborhood of RT #1 [8149, 10415] DUF2283 RVT-UG4 DUF4430 Feature: gene Location: 8149-8334 bp Feature: gene Location: 8500-8712 bp Feature: domain Description: DUF2283 Location: 8536-8659 bp Feature: domain Description: DUF2 2 83 Location: 8536-8659 bp Feature: gene Location: 8760-9254 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8820-8979 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 882 0-8979 bp Feature: gene Location: 9348-9863 bp Feature: domain Description: DUF4430 Location: 9579-9807 bp Feature: domain Description: DUF4430 Location: 9579-9807 bp Feature: gene Location: 10221-10415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2283 (pfam10049), RVT-UG4, DUF4430 (pfam14478)

Seq: JAAHGQ010000023.1 Symploca sp. SIO2D2 2D2_NODE_23, whole genome shotgun sequence (137455 bp)
Overview 1 RT 1: 22429-30328 bp Neighborhood of RT #1 [22429, 30328] AdoMet_MTases AAA_34 RVT_N RVT-GII GIIM McrA Helicase_C_4 KOG1513 Feature: gene Location: 22429-22635 bp Feature: gene Location: 22779-25499 bp Feature: domain Description: AdoMet_MTases Location: 23205-23580 bp Feature: domain Description: AdoMet_MTases Location: 23 205-23 580 bp Feature: domain Description: AAA_34 Location: 24153-25125 bp Feature: domain Description: AAA_3 4 Location: 24153 -25125 bp Feature: gene Location: 26050-27735 bp Feature: domain Description: RVT_N Location: 26086-26332 bp Feature: domain Description: RVT_N Location: 26086-263 3 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26377-26986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 77-26986 bp Feature: domain Description: GIIM Note: maturase Location: 27112-27343 bp Feature: domain Description: GIIM Note: maturase Location: 27112-273 43 bp Feature: domain Description: McrA Location: 27421-27697 bp Feature: domain Description: McrA Location: 27421-27697 bp Feature: gene Location: 27865-29634 bp Feature: domain Description: Helicase_C_4 Location: 28048-28810 bp Feature: domain Description: Helicase_C_4 Location: 28048-28810 bp Feature: domain Description: KOG1513 Location: 29200-29332 bp Feature: domain Description: KOG1513 Location: 29200-293 3 2 bp Feature: gene Location: 29948-30328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), AAA_34 (pfam13872), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Helicase_C_4 (pfam13871), KOG1513 (KOG1513, Nuclear helicase MOP-3/SNO (DEAD-box superfamily) )

Seq: JAAHGQ010000024.1 Symploca sp. SIO2D2 2D2_NODE_24, whole genome shotgun sequence (66790 bp)
Overview 1 RT 1: 18305-23194 bp Neighborhood of RT #1 [18305, 23194] ParB_N_like_MT RVT_N RVT-GII GIIM Feature: gene Location: 18305-18691 bp Feature: domain Description: ParB_N_like_MT Location: 18338-18593 bp Feature: domain Description: ParB_N_like_MT Location: 18338-18593 bp Feature: gene Location: 18751-19008 bp Feature: gene Location: 19267-20907 bp Feature: domain Description: RVT_N Location: 19303-19549 bp Feature: domain Description: RVT_N Location: 19303-1954 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19594-20203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19594 -20203 bp Feature: domain Description: GIIM Note: maturase Location: 20302-20533 bp Feature: domain Description: GIIM Note: maturase Location: 20302-20533 bp Feature: gene Location: 21072-21608 bp Feature: gene Location: 21632-23194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like_MT (cd16844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHGQ010000255.1 Symploca sp. SIO2D2 2D2_NODE_255, whole genome shotgun sequence (9637 bp)
Overview 1 RT 1: 5798-9531 bp Neighborhood of RT #1 [5798, 9635] PRK05478 RVT_N RVT-GII GIIM McrA Feature: gene Location: 5798-7201 bp Feature: domain Description: PRK05478 Location: 5807-7196 bp Feature: domain Description: PRK05 478 Location: 5 807-7196 bp Feature: gene Location: 7522-7773 bp Feature: gene Location: 7773-9635 bp Feature: domain Description: RVT_N Location: 7854-8097 bp Feature: domain Description: RVT_N Location: 785 4-8097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8142-8838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8142-8838 bp Feature: domain Description: GIIM Note: maturase Location: 8937-9168 bp Feature: domain Description: GIIM Note: maturase Location: 8937-9168 bp Feature: domain Description: McrA Location: 9261-9531 bp Feature: domain Description: McrA Location: 9261-95 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05478 (3-isopropylmalate dehydratase large subunit), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGQ010000262.1 Symploca sp. SIO2D2 2D2_NODE_262, whole genome shotgun sequence (9549 bp)
Overview 1 RT 1: 1-1866 bp Neighborhood of RT #1 [1, 1880] RVT_N RVT-GII PRK07459 Feature: gene Location: 1-1020 bp Feature: domain Description: RVT_N Location: 43-289 bp Feature: domain Description: RVT_N Location: 43-289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-1006 bp Feature: gene Location: 1051-1218 bp Feature: gene Location: 1593-1880 bp Feature: domain Description: PRK07459 Location: 1725-1866 bp Feature: domain Description: PRK07459 Location: 1725-186 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK07459 (single-stranded DNA-binding protein; Provisional)

Seq: JAAHGQ010000034.1 Symploca sp. SIO2D2 2D2_NODE_34, whole genome shotgun sequence (31202 bp)
Overview 1 RT 1: 1-5464 bp Neighborhood of RT #1 [1, 5496] RVT_N RVT-GII GIIM HNHc RVT_N T5orf172 Feature: gene Location: 1-150 bp Feature: gene Location: 239-1117 bp Feature: gene Location: 2024-3847 bp Feature: domain Description: RVT_N Location: 2084-2324 bp Feature: domain Description: RVT_N Location: 2084-2324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369-3023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369-3023 bp Feature: domain Description: GIIM Note: maturase Location: 3083-3308 bp Feature: domain Description: GIIM Note: maturase Location: 3083-3308 bp Feature: domain Description: HNHc Note: nucleases Location: 3530-3656 bp Feature: domain Description: HNHc Note: nucleases Location: 3530-3656 bp Feature: gene Location: 4445-4702 bp Feature: domain Description: RVT_N Location: 4517-4700 bp Feature: domain Description: RVT_N Location: 4517 -47 00 bp Feature: gene Location: 5215-5496 bp Feature: domain Description: T5orf172 Location: 5251-5464 bp Feature: domain Description: T5orf17 2 Location: 5251-5464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), T5orf172 (smart00974)

Seq: JAAHGQ010000039.1 Symploca sp. SIO2D2 2D2_NODE_39, whole genome shotgun sequence (28547 bp)
Overview 1 RT 1: 11240-16433 bp Neighborhood of RT #1 [11240, 16433] Telomere_res RVT_N RVT-GII GIIM McrA Feature: gene Location: 11240-12451 bp Feature: domain Description: Telomere_res Location: 11627-12422 bp Feature: domain Description: Telomere_res Location: 11627-12422 bp Feature: gene Location: 12636-12965 bp Feature: gene Location: 13521-15182 bp Feature: domain Description: RVT_N Location: 13557-13803 bp Feature: domain Description: RVT_N Location: 13557-138 03 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13848-14457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138 48 -14457 bp Feature: domain Description: GIIM Note: maturase Location: 14556-14787 bp Feature: domain Description: GIIM Note: maturase Location: 14556-1478 7 bp Feature: domain Description: McrA Location: 14868-15141 bp Feature: domain Description: McrA Location: 148 68 -15141 bp Feature: gene Location: 15328-15921 bp Feature: gene Location: 16182-16433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Telomere_res (pfam16684), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGQ010000414.1 Symploca sp. SIO2D2 2D2_NODE_414, whole genome shotgun sequence (7258 bp)
Overview 1 RT 1: 1344-7188 bp Neighborhood of RT #1 [1344, 7196] TPR_12 TPR TPR_12 TPR_12 Phytase-like RVT-GII GIIM XisH XisI Feature: gene Location: 1344-3290 bp Feature: domain Description: TPR_12 Location: 1554-1695 bp Feature: domain Description: TPR_12 Location: 1554-169 5 bp Feature: domain Description: TPR Location: 2427-2811 bp Feature: domain Description: TPR Location: 2427-2811 bp Feature: domain Description: TPR_12 Location: 2898-3090 bp Feature: domain Description: TPR_12 Location: 289 8-309 0 bp Feature: domain Description: TPR_12 Location: 3114-3222 bp Feature: domain Description: TPR_12 Location: 3114-3222 bp Feature: gene Location: 3467-4705 bp Feature: domain Description: Phytase-like Location: 3695-4649 bp Feature: domain Description: Phytase-like Location: 369 5-4649 bp Feature: gene Location: 5234-6325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5762-6059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5762-6059 bp Feature: domain Description: GIIM Note: maturase Location: 6137-6278 bp Feature: domain Description: GIIM Note: maturase Location: 6137-6278 bp Feature: gene Location: 6457-6891 bp Feature: domain Description: XisH Location: 6460-6856 bp Feature: domain Description: XisH Location: 6460-6856 bp Feature: gene Location: 6861-7196 bp Feature: domain Description: XisI Location: 6864-7188 bp Feature: domain Description: XisI Location: 6864-7188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR (smart00028), Phytase-like (pfam13449), RVT-GII, GIIM (pfam08388), XisH (pfam08814), XisI (pfam08869)

Seq: JAAHGQ010000609.1 Symploca sp. SIO2D2 2D2_NODE_609, whole genome shotgun sequence (5545 bp)
Overview 1 RT 1: 407-5153 bp Neighborhood of RT #1 [407, 5239] TIGR02436 RVT-UG4 SpoVK Feature: gene Location: 407-547 bp Feature: gene Location: 669-986 bp Feature: domain Description: TIGR02436 Location: 693-972 bp Feature: domain Description: TIGR02436 Location: 693-972 bp Feature: gene Location: 1153-1608 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1156-1378 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1156-1378 bp Feature: gene Location: 1689-2960 bp Feature: gene Location: 3323-5239 bp Feature: domain Description: SpoVK Location: 4478-5153 bp Feature: domain Description: SpoVK Location: 4478-5153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02436 (four helix bundle protein), RVT-UG4, SpoVK (COG0464)

Seq: JAAHGQ010000678.1 Symploca sp. SIO2D2 2D2_NODE_678, whole genome shotgun sequence (5122 bp)
Overview 1 RT 1: 399-5063 bp Neighborhood of RT #1 [399, 5119] RVT_N RVT-GII GIIM HNHc DDE_Tnp_Tn3 Feature: gene Location: 399-2363 bp Feature: domain Description: RVT_N Location: 651-897 bp Feature: domain Description: RVT_N Location: 651-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945-1620 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1908 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 2139-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2139-2292 bp Feature: gene Location: 2522-5119 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3893-5063 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3893-5063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_Tn3 (pfam01526)

Seq: JAAHGQ010000696.1 Symploca sp. SIO2D2 2D2_NODE_696, whole genome shotgun sequence (5030 bp)
Overview 1 RT 1: 835-5028 bp Neighborhood of RT #1 [835, 5028] sialate_O-acetylesterase_like2 Exo_endo_phos_2 RVT-GII Feature: gene Location: 835-1965 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 1435-1885 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 1435-1885 bp Feature: gene Location: 2031-4826 bp Feature: domain Description: Exo_endo_phos_2 Location: 2334-2655 bp Feature: domain Description: Exo_endo_phos_2 Location: 2334-2655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-4134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522-4134 bp Feature: gene Location: 4852-5028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sialate_O-acetylesterase_like2 (cd01828), Exo_endo_phos_2 (pfam14529), RVT-GII

Seq: JAAHGQ010000791.1 Symploca sp. SIO2D2 2D2_NODE_791, whole genome shotgun sequence (4483 bp)
Overview 1 RT 1: 361-4353 bp Neighborhood of RT #1 [361, 4481] TIGR02436 RVT-UG4 SpoVK Feature: gene Location: 361-519 bp Feature: gene Location: 1042-1359 bp Feature: domain Description: TIGR02436 Location: 1066-1345 bp Feature: domain Description: TIGR02436 Location: 1066-13 45 bp Feature: gene Location: 1526-1981 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1529-1751 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1529-1751 bp Feature: gene Location: 2139-2654 bp Feature: gene Location: 3105-4481 bp Feature: domain Description: SpoVK Location: 3687-4353 bp Feature: domain Description: SpoVK Location: 3687-4353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02436 (four helix bundle protein), RVT-UG4, SpoVK (COG0464)

Seq: JAAHGQ010000098.1 Symploca sp. SIO2D2 2D2_NODE_98, whole genome shotgun sequence (16070 bp)
Overview 1 RT 1: 8845-14769 bp Neighborhood of RT #1 [8845, 14769] RVT-UG4 DUF4157 Feature: gene Location: 8845-8982 bp Feature: gene Location: 9315-9443 bp Feature: gene Location: 10547-11593 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 10892-11363 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 10892-11363 bp Feature: gene Location: 11757-13982 bp Feature: domain Description: DUF4157 Location: 12306-12534 bp Feature: domain Description: DUF4157 Location: 12306-12534 bp Feature: gene Location: 14626-14769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF4157 (pfam13699)