myRT

myRT report for GCA_010672425.1_ASM1067242v1

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Seq: JAAHGR010001008.1 Symploca sp. SIO2E6 2E6_NODE_1008, whole genome shotgun sequence (2384 bp)
Overview 1 RT 1: 88-2383 bp Neighborhood of RT #1 [88, 2383] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1758 bp Feature: domain Description: RVT_N Location: 136-382 bp Feature: domain Description: RVT_N Location: 1 36-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1 069 bp Feature: domain Description: GIIM Note: maturase Location: 1141-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 41 -1 375 bp Feature: domain Description: HNHc Note: nucleases Location: 1582-1744 bp Feature: domain Description: HNHc Note: nucleases Location: 1 582-1 744 bp Feature: gene Location: 2087-2383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGR010001010.1 Symploca sp. SIO2E6 2E6_NODE_1010, whole genome shotgun sequence (2380 bp)
Overview 1 RT 1: 495-2253 bp Neighborhood of RT #1 [495, 2264] InsQ RVT_N RVT-GII Feature: gene Location: 495-773 bp Feature: domain Description: InsQ Location: 498-729 bp Feature: domain Description: InsQ Location: 498-72 9 bp Feature: gene Location: 986-1117 bp Feature: gene Location: 1398-2264 bp Feature: domain Description: RVT_N Location: 1431-1677 bp Feature: domain Description: RVT_N Location: 1431-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-2253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-2 2 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII

Seq: JAAHGR010001154.1 Symploca sp. SIO2E6 2E6_NODE_1154, whole genome shotgun sequence (1767 bp)
Overview 1 RT 1: 844-1741 bp Neighborhood of RT #1 [844, 1764] RVT-GII GIIM HNHc Feature: gene Location: 844-1764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1072 bp Feature: domain Description: GIIM Note: maturase Location: 1129-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1129-13 57 bp Feature: domain Description: HNHc Note: nucleases Location: 1582-1741 bp Feature: domain Description: HNHc Note: nucleases Location: 1582-1741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGR010001387.1 Symploca sp. SIO2E6 2E6_NODE_1387, whole genome shotgun sequence (1121 bp)
Overview 1 RT 1: 2-959 bp Neighborhood of RT #1 [2, 1003] RVT-GII GIIM McrA Feature: gene Location: 2-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71-266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71-266 bp Feature: domain Description: GIIM Note: maturase Location: 365-596 bp Feature: domain Description: GIIM Note: maturase Location: 365-596 bp Feature: domain Description: McrA Location: 689-959 bp Feature: domain Description: McrA Location: 689-959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGR010001421.1 Symploca sp. SIO2E6 2E6_NODE_1421, whole genome shotgun sequence (1047 bp)
Overview 1 RT 1: 89-1044 bp Neighborhood of RT #1 [89, 1044] RVT-GII GIIM McrA Feature: gene Location: 89-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95-194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 -194 bp Feature: domain Description: GIIM Note: maturase Location: 281-515 bp Feature: domain Description: GIIM Note: maturase Location: 281-5 15 bp Feature: domain Description: McrA Location: 605-854 bp Feature: domain Description: McrA Location: 605 -85 4 bp Feature: gene Location: 898-1044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGR010000021.1 Symploca sp. SIO2E6 2E6_NODE_21, whole genome shotgun sequence (11485 bp)
Overview 1 RT 1: 7809-11484 bp Neighborhood of RT #1 [7809, 11484] PRK00915 RVT_N RVT-GII GIIM HNH Feature: gene Location: 7809-8021 bp Feature: domain Description: PRK00915 Location: 7812-8013 bp Feature: domain Description: PRK00915 Location: 7812-8013 bp Feature: gene Location: 8226-8882 bp Feature: gene Location: 8980-10752 bp Feature: domain Description: RVT_N Location: 9016-9262 bp Feature: domain Description: RVT_N Location: 9016 -926 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9307-9976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9307-9976 bp Feature: domain Description: GIIM Note: maturase Location: 10060-10288 bp Feature: domain Description: GIIM Note: maturase Location: 1006 0-10288 bp Feature: domain Description: HNH Note: nucleases Location: 10513-10648 bp Feature: domain Description: HNH Note: nucleases Location: 10513-106 48 bp Feature: gene Location: 10973-11236 bp Feature: gene Location: 11341-11484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00915 (2-isopropylmalate synthase; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHGR010000227.1 Symploca sp. SIO2E6 2E6_NODE_227, whole genome shotgun sequence (10705 bp)
Overview 1 RT 1: 1-4350 bp Neighborhood of RT #1 [1, 4379] RVT_N RVT-GII GIIM HNHc PhdYeFM_antitox DUF4058 Feature: gene Location: 1-282 bp Feature: gene Location: 1115-2755 bp Feature: domain Description: RVT_N Location: 1163-1403 bp Feature: domain Description: RVT_N Location: 1163-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448-2063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448-2063 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2348 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2348 bp Feature: domain Description: HNHc Note: nucleases Location: 2543-2732 bp Feature: domain Description: HNHc Note: nucleases Location: 2543-27 32 bp Feature: gene Location: 2983-3276 bp Feature: domain Description: PhdYeFM_antitox Location: 3004-3208 bp Feature: domain Description: PhdYeFM_antitox Location: 3004-3208 bp Feature: gene Location: 3591-4379 bp Feature: domain Description: DUF4058 Location: 3594-4350 bp Feature: domain Description: DUF4058 Location: 3594-4350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PhdYeFM_antitox (pfam02604), DUF4058 (pfam13267)

Seq: JAAHGR010000025.1 Symploca sp. SIO2E6 2E6_NODE_25, whole genome shotgun sequence (8008 bp)
Overview 1 RT 1: 2266-7881 bp Neighborhood of RT #1 [2266, 7892] RVT_N RVT-GII RVT-GII GIIM McrA DUF2887 DUF4351 RVT-GII RVT_N RVT-GII Feature: gene Location: 2266-2436 bp Feature: gene Location: 2512-2928 bp Feature: gene Location: 3019-4581 bp Feature: domain Description: RVT_N Location: 3055-3301 bp Feature: domain Description: RVT_N Location: 3055-3301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3781-3946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378 1-3946 bp Feature: domain Description: GIIM Note: maturase Location: 4003-4132 bp Feature: domain Description: GIIM Note: maturase Location: 4003-4132 bp Feature: domain Description: McrA Location: 4234-4528 bp Feature: domain Description: McrA Location: 4234-4528 bp Feature: gene Location: 4931-5080 bp Feature: gene Location: 5379-6266 bp Feature: domain Description: DUF2887 Location: 5421-6009 bp Feature: domain Description: DUF28 8 7 Location: 5421-6009 bp Feature: domain Description: DUF4351 Location: 6075-6243 bp Feature: domain Description: DUF4351 Location: 6075-6243 bp Feature: gene Location: 6259-6426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6277-6409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6277-6409 bp Feature: gene Location: 6772-6909 bp Feature: gene Location: 7035-7892 bp Feature: domain Description: RVT_N Location: 7071-7317 bp Feature: domain Description: RVT_N Location: 7071-7317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7359-7881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7359-78 8 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF2887 (pfam11103), DUF4351 (pfam14261)

Seq: JAAHGR010000382.1 Symploca sp. SIO2E6 2E6_NODE_382, whole genome shotgun sequence (7559 bp)
Overview 1 RT 1: 2806-7486 bp Neighborhood of RT #1 [2806, 7527] PRK13922 PRK13927 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2806-3540 bp Feature: domain Description: PRK13922 Location: 2983-3526 bp Feature: domain Description: PRK139 22 Location: 29 83-3526 bp Feature: gene Location: 3752-4759 bp Feature: domain Description: PRK13927 Location: 3755-4733 bp Feature: domain Description: PRK139 27 Location: 3755-4733 bp Feature: gene Location: 5818-7527 bp Feature: domain Description: RVT_N Location: 5851-6097 bp Feature: domain Description: RVT_N Location: 5851-609 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6139-6805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6139 -6805 bp Feature: domain Description: GIIM Note: maturase Location: 6907-7144 bp Feature: domain Description: GIIM Note: maturase Location: 69 07-7144 bp Feature: domain Description: HNHc Note: nucleases Location: 7333-7486 bp Feature: domain Description: HNHc Note: nucleases Location: 7333-7486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGR010000056.1 Symploca sp. SIO2E6 2E6_NODE_56, whole genome shotgun sequence (22461 bp)
Overview 1 RT 1: 1775-19858 bp Neighborhood of RT #1 [1775, 19858] SpvB VCBS TcdB_toxin_midN TcdB_toxin_midC RhsA RVT-UG4 VRP1 Neuraminidase Kelch kelch Kelch Laminin_G_3 TcA_TcB_BD Feature: gene Location: 1775-2014 bp Feature: gene Location: 2096-9226 bp Feature: domain Description: SpvB Location: 2201-3014 bp Feature: domain Description: SpvB Location: 2201-3014 bp Feature: domain Description: VCBS Location: 3629-3815 bp Feature: domain Description: VCBS Location: 3629-3815 bp Feature: domain Description: TcdB_toxin_midN Location: 4025-4538 bp Feature: domain Description: TcdB_toxin_midN Location: 4025-4538 bp Feature: domain Description: TcdB_toxin_midC Location: 4676-5090 bp Feature: domain Description: TcdB_toxin_midC Location: 4676-5090 bp Feature: domain Description: RhsA Location: 7232-8339 bp Feature: domain Description: RhsA Location: 7232-8339 bp Feature: gene Location: 9376-10395 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9724-10177 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9724-10 177 bp Feature: gene Location: 10791-19646 bp Feature: domain Description: VRP1 Location: 11079-11685 bp Feature: domain Description: VRP1 Location: 110 79-11685 bp Feature: domain Description: Neuraminidase Location: 14385-14679 bp Feature: domain Description: Neuraminidase Location: 14385-14679 bp Feature: domain Description: Kelch Location: 14940-15327 bp Feature: domain Description: Kelch Location: 14940-15327 bp Feature: domain Description: kelch Location: 15372-15492 bp Feature: domain Description: kelch Location: 15372-15492 bp Feature: domain Description: Kelch Location: 15525-15921 bp Feature: domain Description: Kelch Location: 15525-15921 bp Feature: domain Description: Laminin_G_3 Location: 16560-17046 bp Feature: domain Description: Laminin_G_3 Location: 16560-17046 bp Feature: domain Description: TcA_TcB_BD Location: 18306-19170 bp Feature: domain Description: TcA_TcB_BD Location: 18306-19170 bp Feature: gene Location: 19694-19858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpvB (pfam03534), VCBS (pfam13517), TcdB_toxin_midN (pfam12256), TcdB_toxin_midC (pfam12255), RhsA (COG3209), RVT-UG4, VRP1 (pfam03538), Neuraminidase (pfam18413), Kelch (smart00612), kelch (LOAD_kelch)
Laminin_G_3 (pfam13385), TcA_TcB_BD (pfam18276)

Seq: JAAHGR010000627.1 Symploca sp. SIO2E6 2E6_NODE_627, whole genome shotgun sequence (4675 bp)
Overview 1 RT 1: 1-4100 bp Neighborhood of RT #1 [1, 4672] RVT-UG4 RpoE RpoE Feature: gene Location: 1-480 bp Feature: gene Location: 562-1611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 910-1363 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 910-1363 bp Feature: gene Location: 2750-4672 bp Feature: domain Description: RpoE Location: 2756-2927 bp Feature: domain Description: RpoE Location: 2756-2927 bp Feature: domain Description: RpoE Location: 3602-4100 bp Feature: domain Description: RpoE Location: 3602-4100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, RpoE (COG3343)

Seq: JAAHGR010000629.1 Symploca sp. SIO2E6 2E6_NODE_629, whole genome shotgun sequence (4653 bp)
Overview 1 RT 1: 176-4399 bp Neighborhood of RT #1 [176, 4458] RVT-GII RVT-GII McrA RVT_N RVT-GII YkfC HNH InsQ Feature: gene Location: 176-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557-725 bp Feature: domain Description: McrA Location: 959-1280 bp Feature: domain Description: McrA Location: 959-12 80 bp Feature: gene Location: 1730-3547 bp Feature: domain Description: RVT_N Location: 1760-2006 bp Feature: domain Description: RVT_N Location: 1760-2006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048-2747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048-2747 bp Feature: domain Description: YkfC Location: 2909-3101 bp Feature: domain Description: YkfC Location: 2909-3101 bp Feature: domain Description: HNH Note: nucleases Location: 3302-3437 bp Feature: domain Description: HNH Note: nucleases Location: 3302-3437 bp Feature: gene Location: 3712-3888 bp Feature: gene Location: 4129-4458 bp Feature: domain Description: InsQ Location: 4150-4399 bp Feature: domain Description: InsQ Location: 4150-4399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, McrA (COG4058), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844), InsQ (COG0675)

Seq: JAAHGR010000755.1 Symploca sp. SIO2E6 2E6_NODE_755, whole genome shotgun sequence (3681 bp)
Overview 1 RT 1: 416-3675 bp Neighborhood of RT #1 [416, 3680] HTH_37 RVT-AbiA prmA Feature: gene Location: 416-763 bp Feature: domain Description: HTH_37 Location: 449-677 bp Feature: domain Description: HTH_37 Location: 449-677 bp Feature: gene Location: 1095-3101 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1584-2094 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1584-2094 bp Feature: gene Location: 3444-3680 bp Feature: domain Description: prmA Location: 3462-3675 bp Feature: domain Description: prmA Location: 3462-3675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_37 (pfam13744), RVT-AbiA, prmA (TIGR00406)

Seq: JAAHGR010000770.1 Symploca sp. SIO2E6 2E6_NODE_770, whole genome shotgun sequence (3574 bp)
Overview 1 RT 1: 794-3243 bp Neighborhood of RT #1 [794, 3365] RVT_N RVT-GII GIIM McrA OrfB_Zn_ribbon Feature: gene Location: 794-985 bp Feature: gene Location: 1049-1189 bp Feature: gene Location: 1258-3036 bp Feature: domain Description: RVT_N Location: 1288-1534 bp Feature: domain Description: RVT_N Location: 1288-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-2272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-2272 bp Feature: domain Description: GIIM Note: maturase Location: 2380-2602 bp Feature: domain Description: GIIM Note: maturase Location: 2380-2602 bp Feature: domain Description: McrA Location: 2701-2977 bp Feature: domain Description: McrA Location: 2701-2977 bp Feature: gene Location: 3006-3365 bp Feature: domain Description: OrfB_Zn_ribbon Location: 3138-3243 bp Feature: domain Description: OrfB_Zn_ribbon Location: 3138-3243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), OrfB_Zn_ribbon (pfam07282)

Seq: JAAHGR010000999.1 Symploca sp. SIO2E6 2E6_NODE_999, whole genome shotgun sequence (2431 bp)
Overview 1 RT 1: 147-2286 bp Neighborhood of RT #1 [147, 2414] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 147-317 bp Feature: gene Location: 618-2414 bp Feature: domain Description: RVT_N Location: 651-897 bp Feature: domain Description: RVT_N Location: 651-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1713-1950 bp Feature: domain Description: GIIM Note: maturase Location: 1713-1950 bp Feature: domain Description: HNHc Note: nucleases Location: 2139-2286 bp Feature: domain Description: HNHc Note: nucleases Location: 2139-2286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)