myRT

myRT report for GCA_010672525.1_ASM1067252v1

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Seq: JAAHGH010000001.1 Okeania sp. SIO2B3 2B3_NODE_1, whole genome shotgun sequence (327597 bp)
Overview 1 RT 1: 554-5804 bp Neighborhood of RT #1 [554, 6181] HNHc GIIM RVT-GII InsQ McrA RVT-GII GIIM RVT-GII RVT_N RVT-GII OrfB_IS605 HTH_OrfB_IS605 Feature: gene Location: 554-934 bp Feature: domain Description: HNHc Note: nucleases Location: 584-752 bp Feature: domain Description: HNHc Note: nucleases Location: 584-752 bp Feature: gene Location: 1008-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1071-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1 071 -1 302 bp Feature: gene Location: 1509-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512-1794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 2-1 794 bp Feature: gene Location: 1872-2033 bp Feature: gene Location: 2293-2547 bp Feature: domain Description: InsQ Location: 2395-2494 bp Feature: domain Description: InsQ Location: 2395-2494 bp Feature: gene Location: 2547-2963 bp Feature: domain Description: McrA Location: 2577-2841 bp Feature: domain Description: McrA Location: 2577-2841 bp Feature: gene Location: 3038-3454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3044-3134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3044-31 34 bp Feature: domain Description: GIIM Note: maturase Location: 3236-3440 bp Feature: domain Description: GIIM Note: maturase Location: 3236-3440 bp Feature: gene Location: 3550-3783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3553-3694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3553-3694 bp Feature: gene Location: 3752-4363 bp Feature: domain Description: RVT_N Location: 3773-3965 bp Feature: domain Description: RVT_N Location: 3773-3965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4010-4322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 0-4322 bp Feature: gene Location: 5512-5640 bp Feature: domain Description: OrfB_IS605 Location: 5521-5629 bp Feature: domain Description: OrfB_IS605 Location: 5521 -5629 bp Feature: gene Location: 5672-6181 bp Feature: domain Description: HTH_OrfB_IS605 Location: 5675-5804 bp Feature: domain Description: HTH_OrfB_IS605 Location: 5675-5804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), GIIM (pfam08388), RVT-GII, InsQ (COG0675), McrA (COG4058), RVT_N (pfam13655), OrfB_IS605 (pfam01385), HTH_OrfB_IS605 (pfam12323)

Seq: JAAHGH010000017.1 Okeania sp. SIO2B3 2B3_NODE_17, whole genome shotgun sequence (108854 bp)
Overview 1 RT 1: 63181-70168 bp Neighborhood of RT #1 [63181, 70263] thyX PRK07773 NUMOD4 HNH_3 intein_Cterm thyX RVT_N RVT-GII GIIM GT4_PimA-like Feature: gene Location: 63181-63366 bp Feature: gene Location: 63374-64861 bp Feature: domain Description: thyX Location: 63386-63569 bp Feature: domain Description: thyX Location: 63386-63569 bp Feature: domain Description: PRK07773 Location: 63647-63854 bp Feature: domain Description: PRK07773 Location: 63647-63854 bp Feature: domain Description: NUMOD4 Location: 63926-64088 bp Feature: domain Description: NUMOD4 Location: 6392 6-64088 bp Feature: domain Description: HNH_3 Location: 64130-64256 bp Feature: domain Description: HNH_3 Location: 64130-642 56 bp Feature: domain Description: intein_Cterm Location: 64349-64409 bp Feature: domain Description: intein_Cterm Location: 64349-64409 bp Feature: domain Description: thyX Location: 64409-64823 bp Feature: domain Description: thyX Location: 64409-6482 3 bp Feature: gene Location: 65209-66789 bp Feature: domain Description: RVT_N Location: 65245-65491 bp Feature: domain Description: RVT_N Location: 652 45-65491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65533-66229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65533-662 2 9 bp Feature: domain Description: GIIM Note: maturase Location: 66337-66574 bp Feature: domain Description: GIIM Note: maturase Location: 66337-66574 bp Feature: gene Location: 68147-68374 bp Feature: gene Location: 68920-70263 bp Feature: domain Description: GT4_PimA-like Location: 69040-70168 bp Feature: domain Description: GT4_PimA-like Location: 69040-70168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thyX (TIGR02170), PRK07773 (replicative DNA helicase; Validated), NUMOD4 (pfam07463), HNH_3 (pfam13392), intein_Cterm (TIGR01443), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801)

Seq: JAAHGH010000203.1 Okeania sp. SIO2B3 2B3_NODE_203, whole genome shotgun sequence (4688 bp)
Overview 1 RT 1: 133-2179 bp Neighborhood of RT #1 [133, 2430] RVT-GII GIIM HNH HTH_OrfB_IS605 Feature: gene Location: 133-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196-541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196-541 bp Feature: domain Description: GIIM Note: maturase Location: 616-847 bp Feature: domain Description: GIIM Note: maturase Location: 616-847 bp Feature: domain Description: HNH Note: nucleases Location: 1060-1195 bp Feature: domain Description: HNH Note: nucleases Location: 1060-1195 bp Feature: gene Location: 1298-1570 bp Feature: gene Location: 2041-2430 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2044-2179 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2044-2179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), HTH_OrfB_IS605 (pfam12323)

Seq: JAAHGH010000205.1 Okeania sp. SIO2B3 2B3_NODE_205, whole genome shotgun sequence (4647 bp)
Overview 1 RT 1: 114-4646 bp Neighborhood of RT #1 [114, 4646] RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM McrA Feature: gene Location: 114-1706 bp Feature: domain Description: RVT_N Location: 159-396 bp Feature: domain Description: RVT_N Location: 159-396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 56-1128 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1188-1314 bp Feature: domain Description: McrA Location: 1443-1686 bp Feature: domain Description: McrA Location: 14 4 3-1686 bp Feature: gene Location: 2184-2414 bp Feature: gene Location: 2433-4025 bp Feature: domain Description: RVT_N Location: 2478-2715 bp Feature: domain Description: RVT_N Location: 24 78-2715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2775-3447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2775-34 4 7 bp Feature: domain Description: GIIM Note: maturase Location: 3507-3633 bp Feature: domain Description: GIIM Note: maturase Location: 3507-3633 bp Feature: domain Description: McrA Location: 3762-4005 bp Feature: domain Description: McrA Location: 3762-4 005 bp Feature: gene Location: 4503-4646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGH010000213.1 Okeania sp. SIO2B3 2B3_NODE_213, whole genome shotgun sequence (3537 bp)
Overview 1 RT 1: 650-3225 bp Neighborhood of RT #1 [650, 3320] RVT_N RVT-GII GIIM McrA Feature: gene Location: 650-904 bp Feature: gene Location: 923-1117 bp Feature: gene Location: 1437-3320 bp Feature: domain Description: RVT_N Location: 1554-1797 bp Feature: domain Description: RVT_N Location: 15 5 4-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1845-2538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1845 -25 38 bp Feature: domain Description: GIIM Note: maturase Location: 2610-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2610-2844 bp Feature: domain Description: McrA Location: 2883-3225 bp Feature: domain Description: McrA Location: 2883-3225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGH010000032.1 Okeania sp. SIO2B3 2B3_NODE_32, whole genome shotgun sequence (68670 bp)
Overview 1 RT 1: 50550-56981 bp Neighborhood of RT #1 [50550, 56992] Ycf66_N RVT_N RVT-GII GIIM dam Feature: gene Location: 50550-50792 bp Feature: gene Location: 51428-52582 bp Feature: domain Description: Ycf66_N Location: 51461-51683 bp Feature: domain Description: Ycf6 6 _N Location: 5146 1-516 83 bp Feature: gene Location: 53890-55353 bp Feature: domain Description: RVT_N Location: 53932-54151 bp Feature: domain Description: RVT_N Location: 53932-54151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54196-54877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54196 -54877 bp Feature: domain Description: GIIM Note: maturase Location: 54976-55210 bp Feature: domain Description: GIIM Note: maturase Location: 54976 -55210 bp Feature: gene Location: 55612-55851 bp Feature: gene Location: 56195-56992 bp Feature: domain Description: dam Location: 56240-56981 bp Feature: domain Description: dam Location: 56 240-56 981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ycf66_N (pfam07444), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), dam (TIGR00571)

Seq: JAAHGH010000041.1 Okeania sp. SIO2B3 2B3_NODE_41, whole genome shotgun sequence (58813 bp)
Overview 1 RT 1: 548-6330 bp 2 RT 2: 56579-58811 bp Neighborhood of RT #1 [548, 6330] glyco_glyco_glyco_TIGR04182 DUF547 YkfC RVT-GII GIIM Neighborhood of RT #2 [56579, 58811] RVT-UG4 InsQ Feature: gene Location: 548-1333 bp Feature: domain Description: glyco_glyco_glyco_TIGR04182 Location: 566-1169 bp Feature: domain Description: glyco_glyco_glyco_TIGR04182 Location: 566-1169 bp Feature: gene Location: 1674-2528 bp Feature: domain Description: DUF547 Location: 1959-2277 bp Feature: domain Description: DUF547 Location: 1959-227 7 bp Feature: gene Location: 3488-4918 bp Feature: domain Description: YkfC Location: 3542-3713 bp Feature: domain Description: YkfC Location: 3542-37 13 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3791-4445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 91-4445 bp Feature: domain Description: GIIM Note: maturase Location: 4523-4757 bp Feature: domain Description: GIIM Note: maturase Location: 4523-47 57 bp Feature: gene Location: 5770-6030 bp Feature: gene Location: 6145-6330 bp Feature: gene Location: 56579-56743 bp Feature: gene Location: 56876-57106 bp Feature: gene Location: 57246-58382 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 57657-58134 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 57 657 -58134 bp Feature: gene Location: 58400-58576 bp Feature: domain Description: InsQ Location: 58406-58502 bp Feature: domain Description: InsQ Location: 58406-58502 bp Feature: gene Location: 58674-58811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glyco_glyco_glyco_TIGR04182, DUF547 (pfam04784), YkfC (COG3344), RVT-GII, GIIM (pfam08388), RVT-UG4, InsQ (COG0675)

Seq: JAAHGH010000005.1 Okeania sp. SIO2B3 2B3_NODE_5, whole genome shotgun sequence (575459 bp)
Overview 1 RT 1: 110670-115427 bp Neighborhood of RT #1 [110670, 115427] dnaG RVT_N RVT-GII GIIM McrA Feature: gene Location: 110670-110846 bp Feature: domain Description: dnaG Location: 110685-110805 bp Feature: domain Description: dnaG Location: 11068 5-1108 05 bp Feature: gene Location: 110898-111176 bp Feature: gene Location: 111402-113162 bp Feature: domain Description: RVT_N Location: 111519-111762 bp Feature: domain Description: RVT_N Location: 111519-111762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111810-112503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118 10-112503 bp Feature: domain Description: GIIM Note: maturase Location: 112575-112809 bp Feature: domain Description: GIIM Note: maturase Location: 112575-1128 09 bp Feature: domain Description: McrA Location: 112833-113154 bp Feature: domain Description: McrA Location: 1128 33-113154 bp Feature: gene Location: 113654-114004 bp Feature: gene Location: 114051-115427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGH010000053.1 Okeania sp. SIO2B3 2B3_NODE_53, whole genome shotgun sequence (46481 bp)
Overview 1 RT 1: 114-1661 bp Neighborhood of RT #1 [114, 1661] InsQ RVT-GII GIIM Feature: gene Location: 114-791 bp Feature: domain Description: InsQ Location: 150-486 bp Feature: domain Description: InsQ Location: 150-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489 -612 bp Feature: domain Description: GIIM Note: maturase Location: 669-777 bp Feature: domain Description: GIIM Note: maturase Location: 669 -777 bp Feature: gene Location: 1105-1335 bp Feature: gene Location: 1491-1661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, GIIM (pfam08388)

Seq: JAAHGH010000069.1 Okeania sp. SIO2B3 2B3_NODE_69, whole genome shotgun sequence (40661 bp)
Overview 1 RT 1: 10837-16196 bp Neighborhood of RT #1 [10837, 16201] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III TIGR03985 Feature: gene Location: 10837-11055 bp Feature: gene Location: 11694-11966 bp Feature: domain Description: Cas2_I_II_III Location: 11700-11931 bp Feature: domain Description: Cas2_I_II_III Location: 11700-11931 bp Feature: gene Location: 11978-14104 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12239-12842 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12239-12842 bp Feature: domain Description: Cas1_I-II-III Location: 13100-14069 bp Feature: domain Description: Cas1_I-II-III Location: 1310 0-14069 bp Feature: gene Location: 14537-14698 bp Feature: gene Location: 14732-16201 bp Feature: domain Description: TIGR03985 Location: 15440-16196 bp Feature: domain Description: TIGR03985 Location: 15440-16196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: JAAHGH010000083.1 Okeania sp. SIO2B3 2B3_NODE_83, whole genome shotgun sequence (34904 bp)
Overview 1 RT 1: 13872-20947 bp Neighborhood of RT #1 [13872, 20952] Cas2_I_II_III RVT-UG4 Cas1_I-II-III RVT_N RVT-GII GIIM HNHc RVT-CRISPR TIGR03985 Feature: gene Location: 13872-14102 bp Feature: gene Location: 14206-14478 bp Feature: domain Description: Cas2_I_II_III Location: 14212-14443 bp Feature: domain Description: Cas2_I_II_III Location: 14212-14443 bp Feature: gene Location: 14490-15827 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14496-14568 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14496-14568 bp Feature: domain Description: Cas1_I-II-III Location: 14823-15792 bp Feature: domain Description: Cas1_I-II-III Location: 14823-15792 bp Feature: gene Location: 15975-17636 bp Feature: domain Description: RVT_N Location: 16020-16266 bp Feature: domain Description: RVT_N Location: 16020-16266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16314-16953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16314-16953 bp Feature: domain Description: GIIM Note: maturase Location: 17025-17259 bp Feature: domain Description: GIIM Note: maturase Location: 17025-17259 bp Feature: domain Description: HNHc Note: nucleases Location: 17472-17628 bp Feature: domain Description: HNHc Note: nucleases Location: 17472-17628 bp Feature: gene Location: 18253-18996 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 18514-18985 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 18514-18985 bp Feature: gene Location: 19292-19453 bp Feature: gene Location: 19483-20952 bp Feature: domain Description: TIGR03985 Location: 20191-20947 bp Feature: domain Description: TIGR03985 Location: 20191-20947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-UG4, Cas1_I-II-III (cl00656), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT-CRISPR, TIGR03985 (CRISPR-associated protein, TIGR03985 family)