myRT

myRT report for GCA_010672535.1_ASM1067253v1

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Seq: JAAHGI010000001.1 Symploca sp. SIO2B6 2B6_NODE_1, whole genome shotgun sequence (762653 bp)
Overview 1 RT 1: 588739-592906 bp Neighborhood of RT #1 [588739, 592920] RNRR2 RVT_N RVT-GII GIIM HNHc NrdF Feature: gene Location: 588739-588879 bp Feature: gene Location: 589103-589468 bp Feature: domain Description: RNRR2 Location: 589106-589448 bp Feature: domain Description: RNRR2 Location: 5891 06-589448 bp Feature: gene Location: 590106-591980 bp Feature: RT Description: RVT_N Location: 590172-590418 bp Feature: RT Description: RVT_N Location: 5901 72-59041 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590460-591180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590460-591 1 80 bp Feature: domain Description: GIIM Note: maturase Location: 591279-591513 bp Feature: domain Description: GIIM Note: maturase Location: 591 279-591 51 3 bp Feature: domain Description: HNHc Note: nucleases Location: 591705-591855 bp Feature: domain Description: HNHc Note: nucleases Location: 591 705-591 855 bp Feature: gene Location: 592093-592419 bp Feature: gene Location: 592489-592920 bp Feature: domain Description: NrdF Location: 592495-592906 bp Feature: domain Description: NrdF Location: 592495-592906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNRR2 (cd01049), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), NrdF (COG0208)

Seq: JAAHGI010000010.1 Symploca sp. SIO2B6 2B6_NODE_10, whole genome shotgun sequence (210329 bp)
Overview 1 RT 1: 171930-177523 bp 2 RT 2: 185548-191276 bp Neighborhood of RT #1 [171930, 177531] PRK05385 RVT_N RVT-GII GIIM PurM Peptidase_M15 PG_binding_1 Neighborhood of RT #2 [185548, 191350] BaeS BaeS RVT-GII GIIM McrA hisI Feature: gene Location: 171930-172139 bp Feature: domain Description: PRK05385 Location: 171933-172128 bp Feature: domain Description: PRK05385 Location: 171933-172 12 8 bp Feature: gene Location: 172395-172523 bp Feature: gene Location: 173160-174104 bp Feature: RT Description: RVT_N Location: 173196-173364 bp Feature: RT Description: RVT_N Location: 173196-173364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173523-173619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17352 3-173619 bp Feature: domain Description: GIIM Note: maturase Location: 173793-174024 bp Feature: domain Description: GIIM Note: maturase Location: 173793-17402 4 bp Feature: gene Location: 174278-175072 bp Feature: domain Description: PurM Location: 174281-175055 bp Feature: domain Description: PurM Location: 1742 81-175055 bp Feature: gene Location: 176488-177531 bp Feature: domain Description: Peptidase_M15 Location: 176884-177220 bp Feature: domain Description: Peptidase_M15 Location: 176884-1772 2 0 bp Feature: domain Description: PG_binding_1 Location: 177358-177523 bp Feature: domain Description: PG_binding_1 Location: 177358-17752 3 bp Feature: gene Location: 185548-187749 bp Feature: domain Description: BaeS Location: 186025-186391 bp Feature: domain Description: BaeS Location: 18602 5-186391 bp Feature: domain Description: BaeS Location: 186760-187744 bp Feature: domain Description: BaeS Location: 186760-187744 bp Feature: gene Location: 188162-188353 bp Feature: gene Location: 188951-190252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188963-189509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188963-189509 bp Feature: domain Description: GIIM Note: maturase Location: 189608-189842 bp Feature: domain Description: GIIM Note: maturase Location: 189608-189842 bp Feature: domain Description: McrA Location: 189935-190226 bp Feature: domain Description: McrA Location: 189935-1902 2 6 bp Feature: gene Location: 190308-190622 bp Feature: gene Location: 190865-191350 bp Feature: domain Description: hisI Location: 190925-191276 bp Feature: domain Description: hisI Location: 19092 5-1912 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05385 (phosphoribosylaminoimidazole synthetase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PurM (COG0150), Peptidase_M15 (pfam01427), PG_binding_1 (pfam01471), BaeS (COG0642), McrA (COG4058), hisI (PRK00051)

Seq: JAAHGI010000012.1 Symploca sp. SIO2B6 2B6_NODE_12, whole genome shotgun sequence (176434 bp)
Overview 1 RT 1: 1424-6692 bp Neighborhood of RT #1 [1424, 6697] clpS FruBisAldo_II_B RVT_N RVT-GII GIIM McrA MoxR Feature: gene Location: 1424-1744 bp Feature: domain Description: clpS Location: 1466-1736 bp Feature: domain Description: clpS Location: 1466-173 6 bp Feature: gene Location: 1990-3069 bp Feature: domain Description: FruBisAldo_II_B Location: 1999-3037 bp Feature: domain Description: FruBisAldo_II_B Location: 1999-3 03 7 bp Feature: gene Location: 3528-5342 bp Feature: RT Description: RVT_N Location: 3561-3804 bp Feature: RT Description: RVT_N Location: 3 561-3 804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3849-4545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 849-4545 bp Feature: domain Description: GIIM Note: maturase Location: 4644-4875 bp Feature: domain Description: GIIM Note: maturase Location: 4644-4875 bp Feature: domain Description: McrA Location: 4968-5238 bp Feature: domain Description: McrA Location: 4968-523 8 bp Feature: gene Location: 5398-5634 bp Feature: gene Location: 5579-6697 bp Feature: domain Description: MoxR Location: 5783-6692 bp Feature: domain Description: MoxR Location: 5783 -6692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpS, FruBisAldo_II_B (TIGR01521), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), MoxR (COG0714)

Seq: JAAHGI010000015.1 Symploca sp. SIO2B6 2B6_NODE_15, whole genome shotgun sequence (206472 bp)
Overview 1 RT 1: 219-5294 bp Neighborhood of RT #1 [219, 5764] RVT_N RVT-GII GIIM HNHc Ndh TPR TPR_1 TPR Feature: gene Location: 219-407 bp Feature: gene Location: 602-2392 bp Feature: RT Description: RVT_N Location: 644-890 bp Feature: RT Description: RVT_N Location: 64 4 -890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932-1625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1724-1958 bp Feature: domain Description: GIIM Note: maturase Location: 1724 -1958 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-2315 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-2315 bp Feature: gene Location: 3063-4409 bp Feature: domain Description: Ndh Location: 3096-4326 bp Feature: domain Description: Ndh Location: 3096-4 326 bp Feature: gene Location: 4643-5764 bp Feature: domain Description: TPR Location: 4658-4943 bp Feature: domain Description: TPR Location: 4 658-4 94 3 bp Feature: domain Description: TPR_1 Location: 4967-5051 bp Feature: domain Description: TPR_1 Location: 4 967-5051 bp Feature: domain Description: TPR Location: 5066-5294 bp Feature: domain Description: TPR Location: 5066-5294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ndh (COG1252), TPR (smart00028), TPR_1 (pfam00515), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGI010000152.1 Symploca sp. SIO2B6 2B6_NODE_152, whole genome shotgun sequence (6586 bp)
Overview 1 RT 1: 530-5050 bp Neighborhood of RT #1 [530, 5091] RVT_N RVT-GII McrA RRXRR HNH_5 PRK06193 Feature: gene Location: 530-2041 bp Feature: RT Description: RVT_N Location: 566-812 bp Feature: RT Description: RVT_N Location: 5 66-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-145 7 bp Feature: domain Description: McrA Location: 1703-2012 bp Feature: domain Description: McrA Location: 1703-2012 bp Feature: gene Location: 2960-4231 bp Feature: domain Description: RRXRR Location: 2969-3485 bp Feature: domain Description: RRXRR Location: 2969-3485 bp Feature: domain Description: HNH_5 Location: 3542-3689 bp Feature: domain Description: HNH_5 Location: 35 42-3689 bp Feature: gene Location: 4444-5091 bp Feature: domain Description: PRK06193 Location: 4606-5050 bp Feature: domain Description: PRK06193 Location: 4606-5 05 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), HNH_5 (pfam14279), PRK06193 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHGI010000020.1 Symploca sp. SIO2B6 2B6_NODE_20, whole genome shotgun sequence (143832 bp)
Overview 1 RT 1: 159-7136 bp Neighborhood of RT #1 [159, 7153] RVT_N RVT-GII HNH InsQ RVT-GII GIIM McrA GT4_sucrose_synthase PBP2_PotD_PotF_like_1 Feature: gene Location: 159-332 bp Feature: gene Location: 619-1269 bp Feature: RT Description: RVT_N Location: 664-931 bp Feature: RT Description: RVT_N Location: 6 6 4-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1204 bp Feature: gene Location: 1298-1594 bp Feature: domain Description: HNH Note: nucleases Location: 1364-1496 bp Feature: domain Description: HNH Note: nucleases Location: 136 4-1496 bp Feature: gene Location: 1613-1756 bp Feature: domain Description: InsQ Location: 1616-1718 bp Feature: domain Description: InsQ Location: 16 16 -1718 bp Feature: gene Location: 1824-2057 bp Feature: gene Location: 2116-2337 bp Feature: gene Location: 2427-3719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433-2922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433-2922 bp Feature: domain Description: GIIM Note: maturase Location: 3021-3252 bp Feature: domain Description: GIIM Note: maturase Location: 3021-3252 bp Feature: domain Description: McrA Location: 3345-3618 bp Feature: domain Description: McrA Location: 3345-36 18 bp Feature: gene Location: 4261-5769 bp Feature: domain Description: GT4_sucrose_synthase Location: 4324-5620 bp Feature: domain Description: GT4_sucrose_synthase Location: 4324-56 20 bp Feature: gene Location: 5936-7153 bp Feature: domain Description: PBP2_PotD_PotF_like_1 Location: 6026-7136 bp Feature: domain Description: PBP2_PotD_PotF_like_1 Location: 6 026 -7136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), GT4_sucrose_synthase (cd03800), PBP2_PotD_PotF_like_1 (cd13661)

Seq: JAAHGI010000316.1 Symploca sp. SIO2B6 2B6_NODE_316, whole genome shotgun sequence (4602 bp)
Overview 1 RT 1: 488-3838 bp Neighborhood of RT #1 [488, 3927] DDE_Tnp_Tn3 RVT_N RVT_N RVT-GII GIIM HNHc Feature: gene Location: 488-1477 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 533-1403 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 533-1403 bp Feature: gene Location: 1731-1898 bp Feature: gene Location: 1912-3927 bp Feature: RT Description: RVT_N Location: 2011-2086 bp Feature: RT Description: RVT_N Location: 2011-2086 bp Feature: RT Description: RVT_N Location: 2227-2401 bp Feature: RT Description: RVT_N Location: 2227 -2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2443-3127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2443-3127 bp Feature: domain Description: GIIM Note: maturase Location: 3250-3487 bp Feature: domain Description: GIIM Note: maturase Location: 3250-3487 bp Feature: domain Description: HNHc Note: nucleases Location: 3691-3838 bp Feature: domain Description: HNHc Note: nucleases Location: 3691-3838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_Tn3 (pfam01526)

Seq: JAAHGI010000062.1 Symploca sp. SIO2B6 2B6_NODE_62, whole genome shotgun sequence (15374 bp)
Overview 1 RT 1: 478-3111 bp Neighborhood of RT #1 [478, 3111] RVT_N RVT-GII McrA FeoA Feature: gene Location: 478-2031 bp Feature: RT Description: RVT_N Location: 514-760 bp Feature: RT Description: RVT_N Location: 514-760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 11-1405 bp Feature: domain Description: McrA Location: 1639-1960 bp Feature: domain Description: McrA Location: 1639-1960 bp Feature: gene Location: 2200-2667 bp Feature: domain Description: FeoA Location: 2449-2659 bp Feature: domain Description: FeoA Location: 2449-2659 bp Feature: gene Location: 2887-3111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeoA (smart00899), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHGI010000067.1 Symploca sp. SIO2B6 2B6_NODE_67, whole genome shotgun sequence (12503 bp)
Overview 1 RT 1: 930-5689 bp Neighborhood of RT #1 [930, 5709] RVT-DGRs RVT-DGRs Avd_like COG4249 YfmG Feature: gene Location: 930-1457 bp Feature: gene Location: 1529-1894 bp Feature: gene Location: 1833-2321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845-2115 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845-2115 bp Feature: gene Location: 2454-2891 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2658-2889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2658-2889 bp Feature: gene Location: 2909-3241 bp Feature: domain Description: Avd_like Location: 2927-3233 bp Feature: domain Description: Avd_like Location: 29 27-3233 bp Feature: gene Location: 3331-5709 bp Feature: domain Description: COG4249 Location: 3334-4198 bp Feature: domain Description: COG4249 Location: 3334-419 8 bp Feature: domain Description: YfmG Location: 4789-5689 bp Feature: domain Description: YfmG Location: 4789 -5689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), COG4249 (Uncharacterized protein, contains caspase domain ), YfmG (COG1262)