myRT

myRT report for GCA_010672625.1_ASM1067262v1

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Seq: JAAHGC010000001.1 Okeania sp. SIO1H5 1H5_NODE_1, whole genome shotgun sequence (301870 bp)
Overview 1 RT 1: 50197-56517 bp Neighborhood of RT #1 [50197, 56543] BB_PF RVT-UG4 InsQ RVT-UG4 PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 Feature: gene Location: 50197-50331 bp Feature: gene Location: 50969-51883 bp Feature: domain Description: BB_PF Location: 50981-51461 bp Feature: domain Description: BB_PF Location: 50981 -51 461 bp Feature: gene Location: 51988-52614 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52015-52393 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5201 5-52393 bp Feature: gene Location: 52623-53825 bp Feature: domain Description: InsQ Location: 52626-53733 bp Feature: domain Description: InsQ Location: 52626-53733 bp Feature: gene Location: 53892-54344 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 54153-54318 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 541 53-5431 8 bp Feature: gene Location: 54536-55456 bp Feature: domain Description: PDDEXK_2 Location: 54554-55256 bp Feature: domain Description: PDDEXK_2 Location: 54554-55256 bp Feature: domain Description: DUF4351 Location: 55271-55439 bp Feature: domain Description: DUF4351 Location: 55271 -55439 bp Feature: gene Location: 55620-56543 bp Feature: domain Description: PDDEXK_2 Location: 55638-56316 bp Feature: domain Description: PDDEXK_2 Location: 55638-5631 6 bp Feature: domain Description: DUF4351 Location: 56346-56517 bp Feature: domain Description: DUF4351 Location: 56346-5651 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BB_PF (pfam18063), RVT-UG4, InsQ (COG0675), PDDEXK_2 (pfam12784), DUF4351 (pfam14261)

Seq: JAAHGC010000110.1 Okeania sp. SIO1H5 1H5_NODE_110, whole genome shotgun sequence (16282 bp)
Overview 1 RT 1: 3-2149 bp Neighborhood of RT #1 [3, 2149] COG5421 RVT-GII nusB Feature: gene Location: 3-227 bp Feature: domain Description: COG5421 Location: 96-228 bp Feature: domain Description: COG542 1 Location: 96-2 2 8 bp Feature: gene Location: 876-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879-1086 bp Feature: gene Location: 1201-1824 bp Feature: domain Description: nusB Location: 1213-1810 bp Feature: domain Description: nusB Location: 12 13-1810 bp Feature: gene Location: 1970-2149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII, nusB (TIGR01951)

Seq: JAAHGC010000015.1 Okeania sp. SIO1H5 1H5_NODE_15, whole genome shotgun sequence (138469 bp)
Overview 1 RT 1: 29238-36259 bp Neighborhood of RT #1 [29238, 36259] DinB dam RVT_N RVT-GII GIIM Ycf66_N Feature: gene Location: 29238-29741 bp Feature: domain Description: DinB Location: 29241-29736 bp Feature: domain Description: DinB Location: 29241-2973 6 bp Feature: gene Location: 30105-30902 bp Feature: domain Description: dam Location: 30147-30891 bp Feature: domain Description: dam Location: 3 0147-3 0891 bp Feature: gene Location: 31383-32789 bp Feature: domain Description: RVT_N Location: 31425-31650 bp Feature: domain Description: RVT_N Location: 3 1425-3 1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31692-32373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1692-3 23 73 bp Feature: domain Description: GIIM Note: maturase Location: 32472-32706 bp Feature: domain Description: GIIM Note: maturase Location: 3 2472-3 2706 bp Feature: gene Location: 34114-35262 bp Feature: domain Description: Ycf66_N Location: 34147-34369 bp Feature: domain Description: Ycf66_N Location: 3 4147-3 43 69 bp Feature: gene Location: 36056-36259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinB (pfam05163), dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Ycf66_N (pfam07444)

Seq: JAAHGC010000183.1 Okeania sp. SIO1H5 1H5_NODE_183, whole genome shotgun sequence (2551 bp)
Overview 1 RT 1: 102-2354 bp Neighborhood of RT #1 [102, 2440] RVT_N RVT-GII GIIM HNH Feature: gene Location: 102-407 bp Feature: gene Location: 599-2440 bp Feature: domain Description: RVT_N Location: 716-959 bp Feature: domain Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1697 bp Feature: domain Description: GIIM Note: maturase Location: 1772-2006 bp Feature: domain Description: GIIM Note: maturase Location: 1772-2006 bp Feature: domain Description: HNH Note: nucleases Location: 2219-2354 bp Feature: domain Description: HNH Note: nucleases Location: 2219-2354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHGC010000024.1 Okeania sp. SIO1H5 1H5_NODE_24, whole genome shotgun sequence (85015 bp)
Overview 1 RT 1: 18459-23258 bp Neighborhood of RT #1 [18459, 24385] COG3503 RVT-GII AAA_35 COG5635 Feature: gene Location: 18459-18782 bp Feature: domain Description: COG3503 Location: 18483-18735 bp Feature: domain Description: COG35 03 Location: 18483-18735 bp Feature: gene Location: 18977-19117 bp Feature: gene Location: 19294-19551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19297-19477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19297-19477 bp Feature: gene Location: 19848-20549 bp Feature: gene Location: 21497-24385 bp Feature: domain Description: AAA_35 Location: 21527-22559 bp Feature: domain Description: AAA_35 Location: 215 27-225 5 9 bp Feature: domain Description: COG5635 Location: 22853-23258 bp Feature: domain Description: COG5 635 Location: 2285 3-2325 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3503 (Uncharacterized membrane protein ), RVT-GII, AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain )

Seq: JAAHGC010000026.1 Okeania sp. SIO1H5 1H5_NODE_26, whole genome shotgun sequence (82509 bp)
Overview 1 RT 1: 57366-60887 bp Neighborhood of RT #1 [57366, 60904] Bcp RVT_N RVT-GII GIIM McrA Bcp Feature: gene Location: 57366-57560 bp Feature: gene Location: 57798-57932 bp Feature: domain Description: Bcp Location: 57813-57924 bp Feature: domain Description: Bcp Location: 57813-57924 bp Feature: gene Location: 58020-59903 bp Feature: domain Description: RVT_N Location: 58137-58380 bp Feature: domain Description: RVT_N Location: 58137-58380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58428-59121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58428-59121 bp Feature: domain Description: GIIM Note: maturase Location: 59193-59427 bp Feature: domain Description: GIIM Note: maturase Location: 59193-59427 bp Feature: domain Description: McrA Location: 59466-59799 bp Feature: domain Description: McrA Location: 5946 6 -59799 bp Feature: gene Location: 60130-60330 bp Feature: gene Location: 60488-60904 bp Feature: domain Description: Bcp Location: 60608-60887 bp Feature: domain Description: Bcp Location: 6 06 08-6 0887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bcp (COG1225), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGC010000041.1 Okeania sp. SIO1H5 1H5_NODE_41, whole genome shotgun sequence (57933 bp)
Overview 1 RT 1: 34122-39902 bp Neighborhood of RT #1 [34122, 39902] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 34122-34511 bp Feature: gene Location: 34786-35268 bp Feature: domain Description: ThyX Location: 34789-35245 bp Feature: domain Description: ThyX Location: 347 89-35245 bp Feature: gene Location: 35467-36414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35506-35737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35506-357 37 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36043 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36043 bp Feature: domain Description: McrA Location: 36118-36403 bp Feature: domain Description: McrA Location: 36118-36403 bp Feature: gene Location: 36392-37297 bp Feature: domain Description: RVT_N Location: 36560-36803 bp Feature: domain Description: RVT_N Location: 36560-36803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36851-37232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36851-37 232 bp Feature: gene Location: 38403-38798 bp Feature: domain Description: RVT_N Location: 38439-38685 bp Feature: domain Description: RVT_N Location: 38439-38685 bp Feature: gene Location: 39714-39902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHGC010000045.1 Okeania sp. SIO1H5 1H5_NODE_45, whole genome shotgun sequence (54297 bp)
Overview 1 RT 1: 45050-47829 bp Neighborhood of RT #1 [45050, 47918] HTH_OrfB_IS605 RVT-GII OrfB_Zn_ribbon Beta-lactamase2 Feature: gene Location: 45050-45274 bp Feature: domain Description: HTH_OrfB_IS605 Location: 45053-45182 bp Feature: domain Description: HTH_OrfB_IS605 Location: 45053-4518 2 bp Feature: gene Location: 45335-45637 bp Feature: gene Location: 45749-46036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45761-46010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45761-46010 bp Feature: gene Location: 46102-46530 bp Feature: domain Description: OrfB_Zn_ribbon Location: 46309-46441 bp Feature: domain Description: OrfB_Zn_ribbon Location: 46309-46441 bp Feature: gene Location: 46614-47918 bp Feature: domain Description: Beta-lactamase2 Location: 47223-47829 bp Feature: domain Description: Beta-lactamase2 Location: 47223-478 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_OrfB_IS605 (pfam12323), RVT-GII, OrfB_Zn_ribbon (pfam07282), Beta-lactamase2 (pfam13354)

Seq: JAAHGC010000068.1 Okeania sp. SIO1H5 1H5_NODE_68, whole genome shotgun sequence (39445 bp)
Overview 1 RT 1: 12234-18950 bp Neighborhood of RT #1 [12234, 20782] YkfC RVT-GII GIIM TcA_TcB_BD Neuraminidase Feature: gene Location: 12234-12494 bp Feature: gene Location: 12576-12788 bp Feature: gene Location: 13562-14986 bp Feature: domain Description: YkfC Location: 13616-13784 bp Feature: domain Description: YkfC Location: 13616-13784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13865-14519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13865-14519 bp Feature: domain Description: GIIM Note: maturase Location: 14597-14831 bp Feature: domain Description: GIIM Note: maturase Location: 1459 7-14831 bp Feature: gene Location: 15528-16910 bp Feature: domain Description: TcA_TcB_BD Location: 16089-16902 bp Feature: domain Description: TcA_TcB_BD Location: 16089 -169 02 bp Feature: gene Location: 16910-20782 bp Feature: domain Description: Neuraminidase Location: 18716-18950 bp Feature: domain Description: Neuraminidase Location: 18716-189 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), TcA_TcB_BD (pfam18276), Neuraminidase (pfam18413)

Seq: JAAHGC010000079.1 Okeania sp. SIO1H5 1H5_NODE_79, whole genome shotgun sequence (30108 bp)
Overview 1 RT 1: 11165-14358 bp Neighborhood of RT #1 [11165, 14358] BHL RVT-GII GIIM Feature: gene Location: 11165-11452 bp Feature: domain Description: BHL Location: 11168-11432 bp Feature: domain Description: BHL Location: 11168-11432 bp Feature: gene Location: 11897-12070 bp Feature: gene Location: 12145-12840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12148-12469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12148-12469 bp Feature: domain Description: GIIM Note: maturase Location: 12526-12712 bp Feature: domain Description: GIIM Note: maturase Location: 12526-12712 bp Feature: gene Location: 13101-13394 bp Feature: gene Location: 13978-14358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT-GII, GIIM (pfam08388)

Seq: JAAHGC010000088.1 Okeania sp. SIO1H5 1H5_NODE_88, whole genome shotgun sequence (23583 bp)
Overview 1 RT 1: 224-4690 bp Neighborhood of RT #1 [224, 4690] RVT-GII carot_isom Feature: gene Location: 224-445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-410 bp Feature: gene Location: 672-2171 bp Feature: domain Description: carot_isom Location: 684-2139 bp Feature: domain Description: carot_isom Location: 684-2139 bp Feature: gene Location: 3068-4690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, carot_isom (TIGR02730)