myRT

myRT report for GCA_010672635.1_ASM1067263v1

Download annotations/find similar RTs

Seq: JAAHGE010001021.1 Desertifilum sp. SIO1I2 1I2_NODE_1021, whole genome shotgun sequence (1076 bp)
Overview 1 RT 1: 1-1036 bp Neighborhood of RT #1 [1, 1041] RVT_N RVT-GII GIIM Feature: gene Location: 1-1041 bp Feature: domain Description: RVT_N Location: 7-91 bp Feature: domain Description: RVT_N Location: 7-91 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33-829 bp Feature: domain Description: GIIM Note: maturase Location: 931-1036 bp Feature: domain Description: GIIM Note: maturase Location: 931 -1 036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHGE010000129.1 Desertifilum sp. SIO1I2 1I2_NODE_129, whole genome shotgun sequence (10041 bp)
Overview 1 RT 1: 6656-9723 bp Neighborhood of RT #1 [6656, 9782] HsdM RVT_N RVT-GII GIIM HNH Feature: gene Location: 6656-6994 bp Feature: domain Description: HsdM Location: 6770-6971 bp Feature: domain Description: HsdM Location: 6770-6971 bp Feature: gene Location: 7264-7800 bp Feature: gene Location: 7986-9782 bp Feature: domain Description: RVT_N Location: 8073-8319 bp Feature: domain Description: RVT_N Location: 8073-8319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8361-8997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8361-8997 bp Feature: domain Description: GIIM Note: maturase Location: 9129-9363 bp Feature: domain Description: GIIM Note: maturase Location: 912 9-9363 bp Feature: domain Description: HNH Note: nucleases Location: 9585-9723 bp Feature: domain Description: HNH Note: nucleases Location: 9585-972 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHGE010000296.1 Desertifilum sp. SIO1I2 1I2_NODE_296, whole genome shotgun sequence (6263 bp)
Overview 1 RT 1: 2-5161 bp Neighborhood of RT #1 [2, 6174] COG3825 YfmG RVT-DGRs PMT_2 Feature: gene Location: 2-766 bp Feature: domain Description: COG3825 Location: 62-761 bp Feature: domain Description: COG3 825 Location: 62-761 bp Feature: gene Location: 763-2493 bp Feature: domain Description: YfmG Location: 1657-2473 bp Feature: domain Description: YfmG Location: 1657-2473 bp Feature: gene Location: 2926-3984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3136-3775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 13 6-3 775 bp Feature: gene Location: 4050-4220 bp Feature: gene Location: 4438-6174 bp Feature: domain Description: PMT_2 Location: 4735-5161 bp Feature: domain Description: PMT_2 Location: 473 5-5161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3825 (CoxE;Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain ), YfmG (COG1262), RVT-DGRs, PMT_2 (pfam13231)

Seq: JAAHGE010000044.1 Desertifilum sp. SIO1I2 1I2_NODE_44, whole genome shotgun sequence (15056 bp)
Overview 1 RT 1: 10204-14253 bp Neighborhood of RT #1 [10204, 14273] ycf35 Fer RVT-Retrons rnc RhaT Feature: gene Location: 10204-10590 bp Feature: domain Description: ycf35 Location: 10207-10585 bp Feature: domain Description: ycf35 Location: 10207-10585 bp Feature: gene Location: 10590-11045 bp Feature: domain Description: Fer Location: 10731-10911 bp Feature: domain Description: Fer Location: 10731-10911 bp Feature: gene Location: 11084-12499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11630-12248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11630-1224 8 bp Feature: gene Location: 12533-13216 bp Feature: domain Description: rnc Location: 12548-13202 bp Feature: domain Description: rnc Location: 1254 8-13202 bp Feature: gene Location: 13395-14273 bp Feature: domain Description: RhaT Location: 13431-14253 bp Feature: domain Description: RhaT Location: 134 31-14 253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ycf35 (CHL00193), Fer (COG1141), RVT-Retrons, rnc (PRK00102), RhaT (TIGR00776)

Seq: JAAHGE010000709.1 Desertifilum sp. SIO1I2 1I2_NODE_709, whole genome shotgun sequence (2639 bp)
Overview 1 RT 1: 3-2419 bp Neighborhood of RT #1 [3, 2520] HAMP CHD RVT-GII GIIM HNHc Feature: gene Location: 3-1214 bp Feature: domain Description: HAMP Location: 180-321 bp Feature: domain Description: HAMP Location: 180-321 bp Feature: domain Description: CHD Location: 426-981 bp Feature: domain Description: CHD Location: 426-981 bp Feature: gene Location: 1235-1387 bp Feature: gene Location: 1549-2520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567-1759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 67-175 9 bp Feature: domain Description: GIIM Note: maturase Location: 1852-2083 bp Feature: domain Description: GIIM Note: maturase Location: 185 2-2083 bp Feature: domain Description: HNHc Note: nucleases Location: 2278-2419 bp Feature: domain Description: HNHc Note: nucleases Location: 2278-2419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAMP (smart00304), CHD (cd07302), RVT-GII, GIIM (pfam08388), HNHc (smart00507)