myRT

myRT report for GCA_010672645.1_ASM1067264v1

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Seq: JAAHGD010001084.1 Okeania sp. SIO1H6 1H6_NODE_1084, whole genome shotgun sequence (3588 bp)
Overview 1 RT 1: 176-3423 bp Neighborhood of RT #1 [176, 3423] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 176-1693 bp Feature: domain Description: RVT_N Location: 206-452 bp Feature: domain Description: RVT_N Location: 206-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 935-1 097 bp Feature: domain Description: McrA Location: 1346-1679 bp Feature: domain Description: McrA Location: 1 346-1 679 bp Feature: gene Location: 1882-2061 bp Feature: gene Location: 3037-3423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHGD010000124.1 Okeania sp. SIO1H6 1H6_NODE_124, whole genome shotgun sequence (10873 bp)
Overview 1 RT 1: 207-6923 bp Neighborhood of RT #1 [207, 8755] YkfC RVT-GII GIIM TcA_TcB_BD Neuraminidase Feature: gene Location: 207-467 bp Feature: gene Location: 549-761 bp Feature: gene Location: 1535-2959 bp Feature: domain Description: YkfC Location: 1589-1757 bp Feature: domain Description: YkfC Location: 1589-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2 492 bp Feature: domain Description: GIIM Note: maturase Location: 2570-2804 bp Feature: domain Description: GIIM Note: maturase Location: 2 570-2 804 bp Feature: gene Location: 3501-4883 bp Feature: domain Description: TcA_TcB_BD Location: 4062-4875 bp Feature: domain Description: TcA_TcB_BD Location: 4062 -4875 bp Feature: gene Location: 4883-8755 bp Feature: domain Description: Neuraminidase Location: 6689-6923 bp Feature: domain Description: Neuraminidase Location: 6689-692 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), TcA_TcB_BD (pfam18276), Neuraminidase (pfam18413)

Seq: JAAHGD010001327.1 Okeania sp. SIO1H6 1H6_NODE_1327, whole genome shotgun sequence (3157 bp)
Overview 1 RT 1: 1126-3053 bp Neighborhood of RT #1 [1126, 3053] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1126-2781 bp Feature: domain Description: RVT_N Location: 1177-1420 bp Feature: domain Description: RVT_N Location: 1177-1420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1462-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1462-2089 bp Feature: domain Description: GIIM Note: maturase Location: 2146-2374 bp Feature: domain Description: GIIM Note: maturase Location: 2146-23 74 bp Feature: domain Description: HNHc Note: nucleases Location: 2575-2758 bp Feature: domain Description: HNHc Note: nucleases Location: 2575-2758 bp Feature: gene Location: 2790-3053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGD010000003.1 Okeania sp. SIO1H6 1H6_NODE_3, whole genome shotgun sequence (38148 bp)
Overview 1 RT 1: 11862-17430 bp Neighborhood of RT #1 [11862, 18272] YqgC CCB2_CCB4 RVT_N RVT-GII GIIM HNHc STKc_PknB_like Feature: gene Location: 11862-12428 bp Feature: domain Description: YqgC Location: 11901-12411 bp Feature: domain Description: YqgC Location: 11901-124 11 bp Feature: gene Location: 12453-13100 bp Feature: domain Description: CCB2_CCB4 Location: 12492-13071 bp Feature: domain Description: CCB2_CCB4 Location: 124 92-13071 bp Feature: gene Location: 14195-15844 bp Feature: domain Description: RVT_N Location: 14246-14489 bp Feature: domain Description: RVT_N Location: 14 24 6-14 4 89 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14531-15158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 531-15158 bp Feature: domain Description: GIIM Note: maturase Location: 15215-15443 bp Feature: domain Description: GIIM Note: maturase Location: 15215-154 4 3 bp Feature: domain Description: HNHc Note: nucleases Location: 15665-15827 bp Feature: domain Description: HNHc Note: nucleases Location: 15665-15827 bp Feature: gene Location: 16061-16285 bp Feature: gene Location: 16437-18272 bp Feature: domain Description: STKc_PknB_like Location: 16563-17430 bp Feature: domain Description: STKc_PknB_like Location: 16563-174 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgC (COG2839), CCB2_CCB4 (pfam11152), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), STKc_PknB_like (cd14014)

Seq: JAAHGD010000335.1 Okeania sp. SIO1H6 1H6_NODE_335, whole genome shotgun sequence (6900 bp)
Overview 1 RT 1: 4310-6797 bp Neighborhood of RT #1 [4310, 6898] RVT_N RVT-GII YkfC McrA Feature: gene Location: 4310-4648 bp Feature: gene Location: 4707-4955 bp Feature: gene Location: 5159-6898 bp Feature: domain Description: RVT_N Location: 5189-5435 bp Feature: domain Description: RVT_N Location: 5 189-5 435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5477-6149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 477-6149 bp Feature: domain Description: YkfC Location: 6329-6509 bp Feature: domain Description: YkfC Location: 6329-65 09 bp Feature: domain Description: McrA Location: 6566-6797 bp Feature: domain Description: McrA Location: 65 66-6797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058)

Seq: JAAHGD010000037.1 Okeania sp. SIO1H6 1H6_NODE_37, whole genome shotgun sequence (49909 bp)
Overview 1 RT 1: 41975-44066 bp Neighborhood of RT #1 [41975, 44066] RVT-UG4 Feature: gene Location: 41975-42511 bp Feature: gene Location: 42532-42813 bp Feature: gene Location: 42878-43561 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 43226-43493 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 43226 -43493 bp Feature: gene Location: 43563-43691 bp Feature: gene Location: 43803-44066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHGD010000043.1 Okeania sp. SIO1H6 1H6_NODE_43, whole genome shotgun sequence (20434 bp)
Overview 1 RT 1: 290-5599 bp Neighborhood of RT #1 [290, 5599] DDE_Tnp_1_4 RVT_N RVT-GII GIIM McrA Feature: gene Location: 290-544 bp Feature: domain Description: DDE_Tnp_1_4 Location: 326-542 bp Feature: domain Description: DDE_Tnp_1_4 Location: 326-542 bp Feature: gene Location: 1069-1629 bp Feature: gene Location: 1727-3226 bp Feature: domain Description: RVT_N Location: 1751-1997 bp Feature: domain Description: RVT_N Location: 17 51-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045-2639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2045-2639 bp Feature: domain Description: GIIM Note: maturase Location: 2699-2897 bp Feature: domain Description: GIIM Note: maturase Location: 2699-2897 bp Feature: domain Description: McrA Location: 2921-3194 bp Feature: domain Description: McrA Location: 2921-3194 bp Feature: gene Location: 4251-4463 bp Feature: gene Location: 4850-5599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGD010000448.1 Okeania sp. SIO1H6 1H6_NODE_448, whole genome shotgun sequence (5881 bp)
Overview 1 RT 1: 447-5123 bp Neighborhood of RT #1 [447, 5123] RVT_N HNH RVT_N RVT-GII RVT-GII GIIM McrA ThyX Feature: gene Location: 447-842 bp Feature: domain Description: RVT_N Location: 483-729 bp Feature: domain Description: RVT_N Location: 48 3-729 bp Feature: gene Location: 1016-1156 bp Feature: domain Description: HNH Note: nucleases Location: 1022-1115 bp Feature: domain Description: HNH Note: nucleases Location: 1022-1115 bp Feature: gene Location: 1948-2853 bp Feature: domain Description: RVT_N Location: 2116-2359 bp Feature: domain Description: RVT_N Location: 2116-2359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407-2788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2407-278 8 bp Feature: gene Location: 2831-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2870-3101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 70-3101 bp Feature: domain Description: GIIM Note: maturase Location: 3176-3407 bp Feature: domain Description: GIIM Note: maturase Location: 3176-3407 bp Feature: domain Description: McrA Location: 3482-3767 bp Feature: domain Description: McrA Location: 348 2-3767 bp Feature: gene Location: 3977-4459 bp Feature: domain Description: ThyX Location: 3980-4436 bp Feature: domain Description: ThyX Location: 398 0-4436 bp Feature: gene Location: 4734-5123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), HNH (pfam01844), RVT-GII, GIIM (pfam08388), McrA (COG4058), ThyX (COG1351)

Seq: JAAHGD010000515.1 Okeania sp. SIO1H6 1H6_NODE_515, whole genome shotgun sequence (5538 bp)
Overview 1 RT 1: 1216-4684 bp Neighborhood of RT #1 [1216, 4767] DinB dam RVT_N RVT-GII GIIM Feature: gene Location: 1216-1719 bp Feature: domain Description: DinB Location: 1219-1714 bp Feature: domain Description: DinB Location: 1219 -1714 bp Feature: gene Location: 2083-2880 bp Feature: domain Description: dam Location: 2125-2869 bp Feature: domain Description: dam Location: 2125-2869 bp Feature: gene Location: 3361-4767 bp Feature: domain Description: RVT_N Location: 3403-3628 bp Feature: domain Description: RVT_N Location: 3403-3628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670-4351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670-4351 bp Feature: domain Description: GIIM Note: maturase Location: 4450-4684 bp Feature: domain Description: GIIM Note: maturase Location: 4450-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinB (pfam05163), dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHGD010000057.1 Okeania sp. SIO1H6 1H6_NODE_57, whole genome shotgun sequence (16651 bp)
Overview 1 RT 1: 66-4865 bp Neighborhood of RT #1 [66, 5992] COG3503 RVT-GII AAA_35 COG5635 Feature: gene Location: 66-389 bp Feature: domain Description: COG3503 Location: 90-342 bp Feature: domain Description: COG3503 Location: 90-342 bp Feature: gene Location: 901-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904-10 84 bp Feature: gene Location: 1455-2156 bp Feature: gene Location: 3104-5992 bp Feature: domain Description: AAA_35 Location: 3134-4166 bp Feature: domain Description: AAA_35 Location: 3134-4166 bp Feature: domain Description: COG5635 Location: 4460-4865 bp Feature: domain Description: COG5635 Location: 4460-4865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3503 (Uncharacterized membrane protein ), RVT-GII, AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain )

Seq: JAAHGD010000670.1 Okeania sp. SIO1H6 1H6_NODE_670, whole genome shotgun sequence (4781 bp)
Overview 1 RT 1: 863-3052 bp Neighborhood of RT #1 [863, 3052] RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 863-1309 bp Feature: domain Description: RVT_N Location: 914-1157 bp Feature: domain Description: RVT_N Location: 914-11 57 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1199-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 99-1280 bp Feature: gene Location: 1623-2522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1650-1830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1650-1830 bp Feature: domain Description: GIIM Note: maturase Location: 1887-2115 bp Feature: domain Description: GIIM Note: maturase Location: 1887-211 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2340-2499 bp Feature: domain Description: HNHc Note: nucleases Location: 2340-2499 bp Feature: gene Location: 2654-2830 bp Feature: gene Location: 2849-3052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGD010000678.1 Okeania sp. SIO1H6 1H6_NODE_678, whole genome shotgun sequence (4725 bp)
Overview 1 RT 1: 3093-4563 bp Neighborhood of RT #1 [3093, 4577] RVT-GII GIIM McrA Feature: gene Location: 3093-3395 bp Feature: gene Location: 3436-3594 bp Feature: gene Location: 3762-4577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3771-3900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3771-3900 bp Feature: domain Description: GIIM Note: maturase Location: 3972-4206 bp Feature: domain Description: GIIM Note: maturase Location: 3972-4206 bp Feature: domain Description: McrA Location: 4275-4563 bp Feature: domain Description: McrA Location: 4275-4563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGD010000071.1 Okeania sp. SIO1H6 1H6_NODE_71, whole genome shotgun sequence (14963 bp)
Overview 1 RT 1: 12252-14877 bp Neighborhood of RT #1 [12252, 14903] PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 RVT-UG4 Feature: gene Location: 12252-13175 bp Feature: domain Description: PDDEXK_2 Location: 12270-12948 bp Feature: domain Description: PDDEXK_2 Location: 12270-12948 bp Feature: domain Description: DUF4351 Location: 12978-13149 bp Feature: domain Description: DUF4351 Location: 12978-13 149 bp Feature: gene Location: 13339-14259 bp Feature: domain Description: PDDEXK_2 Location: 13357-14059 bp Feature: domain Description: PDDEXK_2 Location: 13 357-14059 bp Feature: domain Description: DUF4351 Location: 14074-14242 bp Feature: domain Description: DUF4351 Location: 14074-14242 bp Feature: gene Location: 14451-14903 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14712-14877 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14712-14877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), DUF4351 (pfam14261), RVT-UG4

Seq: JAAHGD010000735.1 Okeania sp. SIO1H6 1H6_NODE_735, whole genome shotgun sequence (4555 bp)
Overview 1 RT 1: 3-3497 bp Neighborhood of RT #1 [3, 3514] Bcp RVT_N RVT-GII GIIM McrA Bcp Feature: gene Location: 3-170 bp Feature: gene Location: 408-542 bp Feature: domain Description: Bcp Location: 423-534 bp Feature: domain Description: Bcp Location: 423-534 bp Feature: gene Location: 630-2513 bp Feature: domain Description: RVT_N Location: 747-990 bp Feature: domain Description: RVT_N Location: 747-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1731 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2037 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2037 bp Feature: domain Description: McrA Location: 2076-2409 bp Feature: domain Description: McrA Location: 2076-2409 bp Feature: gene Location: 2740-2940 bp Feature: gene Location: 3098-3514 bp Feature: domain Description: Bcp Location: 3218-3497 bp Feature: domain Description: Bcp Location: 3218-3497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bcp (COG1225), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGD010000794.1 Okeania sp. SIO1H6 1H6_NODE_794, whole genome shotgun sequence (4385 bp)
Overview 1 RT 1: 194-2655 bp Neighborhood of RT #1 [194, 2655] RVT-GII GIIM Feature: gene Location: 194-367 bp Feature: gene Location: 442-1137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-766 bp Feature: domain Description: GIIM Note: maturase Location: 823-1009 bp Feature: domain Description: GIIM Note: maturase Location: 823-1009 bp Feature: gene Location: 1398-1691 bp Feature: gene Location: 2275-2655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAHGD010000833.1 Okeania sp. SIO1H6 1H6_NODE_833, whole genome shotgun sequence (4276 bp)
Overview 1 RT 1: 94-2211 bp Neighborhood of RT #1 [94, 2211] RVT_N RVT-GII Feature: gene Location: 94-1134 bp Feature: domain Description: RVT_N Location: 139-385 bp Feature: domain Description: RVT_N Location: 139-385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1015 bp Feature: gene Location: 1555-1713 bp Feature: gene Location: 1951-2211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII