myRT

myRT report for GCA_010672695.1_ASM1067269v1

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Seq: JAAHGB010000109.1 Okeania sp. SIO1H4 1H4_NODE_109, whole genome shotgun sequence (16433 bp)
Overview 1 RT 1: 127-2300 bp Neighborhood of RT #1 [127, 2300] COG5421 RVT-GII nusB Feature: gene Location: 127-378 bp Feature: domain Description: COG5421 Location: 220-355 bp Feature: domain Description: COG5421 Location: 220-355 bp Feature: gene Location: 1027-1239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 030-1 237 bp Feature: gene Location: 1352-1975 bp Feature: domain Description: nusB Location: 1364-1961 bp Feature: domain Description: nusB Location: 1 364-1 961 bp Feature: gene Location: 2121-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII, nusB (TIGR01951)

Seq: JAAHGB010000160.1 Okeania sp. SIO1H4 1H4_NODE_160, whole genome shotgun sequence (2551 bp)
Overview 1 RT 1: 102-2354 bp Neighborhood of RT #1 [102, 2440] RVT_N RVT-GII GIIM HNH Feature: gene Location: 102-407 bp Feature: gene Location: 599-2440 bp Feature: domain Description: RVT_N Location: 716-959 bp Feature: domain Description: RVT_N Location: 716-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1697 bp Feature: domain Description: GIIM Note: maturase Location: 1772-2006 bp Feature: domain Description: GIIM Note: maturase Location: 1772 -2 006 bp Feature: domain Description: HNH Note: nucleases Location: 2219-2354 bp Feature: domain Description: HNH Note: nucleases Location: 2 2 19-2 354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHGB010000021.1 Okeania sp. SIO1H4 1H4_NODE_21, whole genome shotgun sequence (89174 bp)
Overview 1 RT 1: 70231-73424 bp Neighborhood of RT #1 [70231, 73424] BHL RVT-GII GIIM Feature: gene Location: 70231-70518 bp Feature: domain Description: BHL Location: 70234-70498 bp Feature: domain Description: BHL Location: 7023 4-70498 bp Feature: gene Location: 70963-71136 bp Feature: gene Location: 71211-71906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71214-71535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71214-7153 5 bp Feature: domain Description: GIIM Note: maturase Location: 71592-71778 bp Feature: domain Description: GIIM Note: maturase Location: 71592-71778 bp Feature: gene Location: 72167-72460 bp Feature: gene Location: 73044-73424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT-GII, GIIM (pfam08388)

Seq: JAAHGB010000027.1 Okeania sp. SIO1H4 1H4_NODE_27, whole genome shotgun sequence (82149 bp)
Overview 1 RT 1: 57366-60887 bp Neighborhood of RT #1 [57366, 60904] Bcp RVT_N RVT-GII GIIM McrA Bcp Feature: gene Location: 57366-57560 bp Feature: gene Location: 57798-57932 bp Feature: domain Description: Bcp Location: 57813-57924 bp Feature: domain Description: Bcp Location: 57813-57924 bp Feature: gene Location: 58020-59903 bp Feature: domain Description: RVT_N Location: 58137-58380 bp Feature: domain Description: RVT_N Location: 58137-58380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58428-59121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584 28-59121 bp Feature: domain Description: GIIM Note: maturase Location: 59193-59427 bp Feature: domain Description: GIIM Note: maturase Location: 59193-594 27 bp Feature: domain Description: McrA Location: 59466-59799 bp Feature: domain Description: McrA Location: 594 66-59799 bp Feature: gene Location: 60130-60330 bp Feature: gene Location: 60488-60904 bp Feature: domain Description: Bcp Location: 60608-60887 bp Feature: domain Description: Bcp Location: 60608-60887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bcp (COG1225), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGB010000036.1 Okeania sp. SIO1H4 1H4_NODE_36, whole genome shotgun sequence (67677 bp)
Overview 1 RT 1: 29238-36259 bp Neighborhood of RT #1 [29238, 36259] DinB dam RVT_N RVT-GII GIIM Ycf66_N Feature: gene Location: 29238-29741 bp Feature: domain Description: DinB Location: 29241-29736 bp Feature: domain Description: DinB Location: 29241-29736 bp Feature: gene Location: 30105-30902 bp Feature: domain Description: dam Location: 30147-30891 bp Feature: domain Description: dam Location: 30147-30891 bp Feature: gene Location: 31383-32789 bp Feature: domain Description: RVT_N Location: 31425-31650 bp Feature: domain Description: RVT_N Location: 31425 -3165 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31692-32373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31692-32373 bp Feature: domain Description: GIIM Note: maturase Location: 32472-32706 bp Feature: domain Description: GIIM Note: maturase Location: 32472-32706 bp Feature: gene Location: 34114-35262 bp Feature: domain Description: Ycf66_N Location: 34147-34369 bp Feature: domain Description: Ycf66_N Location: 34147-34369 bp Feature: gene Location: 36056-36259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinB (pfam05163), dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Ycf66_N (pfam07444)

Seq: JAAHGB010000040.1 Okeania sp. SIO1H4 1H4_NODE_40, whole genome shotgun sequence (63855 bp)
Overview 1 RT 1: 224-4690 bp Neighborhood of RT #1 [224, 4690] RVT-GII carot_isom Feature: gene Location: 224-445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 0-410 bp Feature: gene Location: 672-2171 bp Feature: domain Description: carot_isom Location: 684-2139 bp Feature: domain Description: carot_isom Location: 6 84-2139 bp Feature: gene Location: 3068-4690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, carot_isom (TIGR02730)

Seq: JAAHGB010000042.1 Okeania sp. SIO1H4 1H4_NODE_42, whole genome shotgun sequence (61579 bp)
Overview 1 RT 1: 52332-55111 bp Neighborhood of RT #1 [52332, 55200] HTH_OrfB_IS605 RVT-GII OrfB_Zn_ribbon Beta-lactamase2 Feature: gene Location: 52332-52556 bp Feature: domain Description: HTH_OrfB_IS605 Location: 52335-52464 bp Feature: domain Description: HTH_OrfB_IS605 Location: 52335-52464 bp Feature: gene Location: 52617-52919 bp Feature: gene Location: 53031-53318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53043-53292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53043-53292 bp Feature: gene Location: 53384-53812 bp Feature: domain Description: OrfB_Zn_ribbon Location: 53591-53723 bp Feature: domain Description: OrfB_Zn_ribbon Location: 53591-537 23 bp Feature: gene Location: 53896-55200 bp Feature: domain Description: Beta-lactamase2 Location: 54505-55111 bp Feature: domain Description: Beta-lactamase2 Location: 54505-55111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_OrfB_IS605 (pfam12323), RVT-GII, OrfB_Zn_ribbon (pfam07282), Beta-lactamase2 (pfam13354)

Seq: JAAHGB010000046.1 Okeania sp. SIO1H4 1H4_NODE_46, whole genome shotgun sequence (57933 bp)
Overview 1 RT 1: 34122-39902 bp Neighborhood of RT #1 [34122, 39902] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 34122-34511 bp Feature: gene Location: 34786-35268 bp Feature: domain Description: ThyX Location: 34789-35245 bp Feature: domain Description: ThyX Location: 3478 9-35245 bp Feature: gene Location: 35467-36414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35506-35737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35506-35737 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36043 bp Feature: domain Description: GIIM Note: maturase Location: 358 12-36043 bp Feature: domain Description: McrA Location: 36118-36403 bp Feature: domain Description: McrA Location: 36118 -36403 bp Feature: gene Location: 36392-37297 bp Feature: domain Description: RVT_N Location: 36560-36803 bp Feature: domain Description: RVT_N Location: 36560-368 03 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36851-37232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368 51-37232 bp Feature: gene Location: 38403-38798 bp Feature: domain Description: RVT_N Location: 38439-38685 bp Feature: domain Description: RVT_N Location: 38 439-38 68 5 bp Feature: gene Location: 39714-39902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHGB010000005.1 Okeania sp. SIO1H4 1H4_NODE_5, whole genome shotgun sequence (381147 bp)
Overview 1 RT 1: 142117-147996 bp Neighborhood of RT #1 [142117, 148043] AAA_35 COG5635 RVT-GII COG3503 COG3503 Feature: gene Location: 142117-145005 bp Feature: domain Description: AAA_35 Location: 142147-143179 bp Feature: domain Description: AAA_35 Location: 142147-143179 bp Feature: domain Description: COG5635 Location: 143473-143878 bp Feature: domain Description: COG5635 Location: 143473-143878 bp Feature: gene Location: 145953-146654 bp Feature: gene Location: 146951-147208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146954-147134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469 54-147134 bp Feature: gene Location: 147482-147682 bp Feature: domain Description: COG3503 Location: 147485-147611 bp Feature: domain Description: COG3503 Location: 147485-147611 bp Feature: gene Location: 147720-148043 bp Feature: domain Description: COG3503 Location: 147744-147996 bp Feature: domain Description: COG3503 Location: 147744-1479 9 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain ), RVT-GII, COG3503 (Uncharacterized membrane protein )

Seq: JAAHGB010000006.1 Okeania sp. SIO1H4 1H4_NODE_6, whole genome shotgun sequence (795910 bp)
Overview 1 RT 1: 544294-550614 bp Neighborhood of RT #1 [544294, 550640] BB_PF RVT-UG4 InsQ RVT-UG4 PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 Feature: gene Location: 544294-544428 bp Feature: gene Location: 545066-545980 bp Feature: domain Description: BB_PF Location: 545078-545558 bp Feature: domain Description: BB_PF Location: 545078-545558 bp Feature: gene Location: 546085-546711 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 546112-546490 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 546112-546490 bp Feature: gene Location: 546720-547922 bp Feature: domain Description: InsQ Location: 546723-547830 bp Feature: domain Description: InsQ Location: 546723-547830 bp Feature: gene Location: 547989-548441 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 548250-548415 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 548250-548415 bp Feature: gene Location: 548633-549553 bp Feature: domain Description: PDDEXK_2 Location: 548651-549353 bp Feature: domain Description: PDDEXK_2 Location: 548651-549353 bp Feature: domain Description: DUF4351 Location: 549368-549536 bp Feature: domain Description: DUF4351 Location: 549368-549536 bp Feature: gene Location: 549717-550640 bp Feature: domain Description: PDDEXK_2 Location: 549735-550413 bp Feature: domain Description: PDDEXK_2 Location: 549735-550413 bp Feature: domain Description: DUF4351 Location: 550443-550614 bp Feature: domain Description: DUF4351 Location: 550443-550614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BB_PF (pfam18063), RVT-UG4, InsQ (COG0675), PDDEXK_2 (pfam12784), DUF4351 (pfam14261)

Seq: JAAHGB010000077.1 Okeania sp. SIO1H4 1H4_NODE_77, whole genome shotgun sequence (26341 bp)
Overview 1 RT 1: 5556-14104 bp Neighborhood of RT #1 [5556, 14104] Neuraminidase TcA_TcB_BD YkfC RVT-GII GIIM Feature: gene Location: 5556-9428 bp Feature: domain Description: Neuraminidase Location: 7362-7596 bp Feature: domain Description: Neuraminidase Location: 7362-7596 bp Feature: gene Location: 9428-10810 bp Feature: domain Description: TcA_TcB_BD Location: 9989-10802 bp Feature: domain Description: TcA_TcB_BD Location: 9989-10802 bp Feature: gene Location: 11352-12776 bp Feature: domain Description: YkfC Location: 11406-11574 bp Feature: domain Description: YkfC Location: 11 406-11 574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11655-12309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 655-12309 bp Feature: domain Description: GIIM Note: maturase Location: 12387-12621 bp Feature: domain Description: GIIM Note: maturase Location: 12387-12621 bp Feature: gene Location: 13457-13762 bp Feature: gene Location: 13844-14104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Neuraminidase (pfam18413), TcA_TcB_BD (pfam18276), YkfC (COG3344), RVT-GII, GIIM (pfam08388)