myRT

myRT report for GCA_010672745.1_ASM1067274v1

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Seq: JAAHFW010000109.1 Okeania sp. SIO1F9 1F9_NODE_109, whole genome shotgun sequence (16763 bp)
Overview 1 RT 1: 224-4810 bp Neighborhood of RT #1 [224, 4810] RVT-GII carot_isom Feature: gene Location: 224-445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-41 0 bp Feature: gene Location: 792-2291 bp Feature: domain Description: carot_isom Location: 804-2259 bp Feature: domain Description: carot_isom Location: 804-2259 bp Feature: gene Location: 3188-4810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, carot_isom (TIGR02730)

Seq: JAAHFW010000015.1 Okeania sp. SIO1F9 1F9_NODE_15, whole genome shotgun sequence (142563 bp)
Overview 1 RT 1: 33818-40805 bp Neighborhood of RT #1 [33818, 40805] DinB dam RVT_N RVT-GII GIIM Ycf66_N Feature: gene Location: 33818-34321 bp Feature: domain Description: DinB Location: 33821-34316 bp Feature: domain Description: DinB Location: 3382 1-34316 bp Feature: gene Location: 34685-35482 bp Feature: domain Description: dam Location: 34730-35471 bp Feature: domain Description: dam Location: 34730-35471 bp Feature: gene Location: 35963-37369 bp Feature: domain Description: RVT_N Location: 36005-36230 bp Feature: domain Description: RVT_N Location: 36005-362 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36272-36953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 72 -36953 bp Feature: domain Description: GIIM Note: maturase Location: 37052-37286 bp Feature: domain Description: GIIM Note: maturase Location: 37052 -372 86 bp Feature: gene Location: 38687-39835 bp Feature: domain Description: Ycf66_N Location: 38720-38942 bp Feature: domain Description: Ycf66_N Location: 3872 0-38942 bp Feature: gene Location: 40602-40805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinB (pfam05163), dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Ycf66_N (pfam07444)

Seq: JAAHFW010000170.1 Okeania sp. SIO1F9 1F9_NODE_170, whole genome shotgun sequence (2552 bp)
Overview 1 RT 1: 112-2382 bp Neighborhood of RT #1 [112, 2382] RVT_N RVT-GII GIIM HNH Feature: gene Location: 112-1953 bp Feature: domain Description: RVT_N Location: 229-472 bp Feature: domain Description: RVT_N Location: 229-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1210 bp Feature: domain Description: GIIM Note: maturase Location: 1285-1519 bp Feature: domain Description: GIIM Note: maturase Location: 1285-1519 bp Feature: domain Description: HNH Note: nucleases Location: 1732-1867 bp Feature: domain Description: HNH Note: nucleases Location: 173 2-1867 bp Feature: gene Location: 2182-2382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHFW010000002.1 Okeania sp. SIO1F9 1F9_NODE_2, whole genome shotgun sequence (364756 bp)
Overview 1 RT 1: 192024-194623 bp Neighborhood of RT #1 [192024, 194670] RVT-GII COG3503 COG3503 Feature: gene Location: 192024-192173 bp Feature: gene Location: 192585-193286 bp Feature: gene Location: 193583-193840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193586-193766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193586-193766 bp Feature: gene Location: 194007-194309 bp Feature: domain Description: COG3503 Location: 194052-194238 bp Feature: domain Description: COG3503 Location: 194 052-194 238 bp Feature: gene Location: 194347-194670 bp Feature: domain Description: COG3503 Location: 194371-194623 bp Feature: domain Description: COG3503 Location: 194 371-194 623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3503 (Uncharacterized membrane protein )

Seq: JAAHFW010000021.1 Okeania sp. SIO1F9 1F9_NODE_21, whole genome shotgun sequence (106429 bp)
Overview 1 RT 1: 87112-89610 bp Neighborhood of RT #1 [87112, 89610] BHL RVT-GII GIIM Feature: gene Location: 87112-87399 bp Feature: domain Description: BHL Location: 87115-87379 bp Feature: domain Description: BHL Location: 87115 -87379 bp Feature: gene Location: 87843-88016 bp Feature: gene Location: 88091-88786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88094-88415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88094-88415 bp Feature: domain Description: GIIM Note: maturase Location: 88472-88658 bp Feature: domain Description: GIIM Note: maturase Location: 88472-8865 8 bp Feature: gene Location: 89047-89340 bp Feature: gene Location: 89449-89610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT-GII, GIIM (pfam08388)

Seq: JAAHFW010000022.1 Okeania sp. SIO1F9 1F9_NODE_22, whole genome shotgun sequence (100372 bp)
Overview 1 RT 1: 37566-43289 bp Neighborhood of RT #1 [37566, 43289] PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 RVT-UG4 InsQ RVT-UG4 BB_PF Feature: gene Location: 37566-38489 bp Feature: domain Description: PDDEXK_2 Location: 37584-38262 bp Feature: domain Description: PDDEXK_2 Location: 37584-3826 2 bp Feature: domain Description: DUF4351 Location: 38292-38463 bp Feature: domain Description: DUF4351 Location: 38292-3846 3 bp Feature: gene Location: 38653-39573 bp Feature: domain Description: PDDEXK_2 Location: 38671-39373 bp Feature: domain Description: PDDEXK_2 Location: 386 71-39373 bp Feature: domain Description: DUF4351 Location: 39388-39556 bp Feature: domain Description: DUF4351 Location: 39388-39556 bp Feature: gene Location: 39765-40217 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40026-40191 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40026 -40191 bp Feature: gene Location: 40284-41486 bp Feature: domain Description: InsQ Location: 40287-41394 bp Feature: domain Description: InsQ Location: 40287-41394 bp Feature: gene Location: 41495-42121 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 41522-41900 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 41522-41900 bp Feature: gene Location: 42226-43140 bp Feature: domain Description: BB_PF Location: 42238-42718 bp Feature: domain Description: BB_PF Location: 42238-42718 bp Feature: gene Location: 43155-43289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), DUF4351 (pfam14261), RVT-UG4, InsQ (COG0675), BB_PF (pfam18063)

Seq: JAAHFW010000030.1 Okeania sp. SIO1F9 1F9_NODE_30, whole genome shotgun sequence (79322 bp)
Overview 1 RT 1: 56794-60315 bp Neighborhood of RT #1 [56794, 60332] Bcp RVT_N RVT-GII GIIM McrA Bcp Feature: gene Location: 56794-56988 bp Feature: gene Location: 57226-57360 bp Feature: domain Description: Bcp Location: 57241-57352 bp Feature: domain Description: Bcp Location: 57 241-57 352 bp Feature: gene Location: 57448-59331 bp Feature: domain Description: RVT_N Location: 57565-57808 bp Feature: domain Description: RVT_N Location: 57 565-57 808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57856-58549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57 856-58549 bp Feature: domain Description: GIIM Note: maturase Location: 58621-58855 bp Feature: domain Description: GIIM Note: maturase Location: 58621-58855 bp Feature: domain Description: McrA Location: 58894-59227 bp Feature: domain Description: McrA Location: 58894-59227 bp Feature: gene Location: 59558-59758 bp Feature: gene Location: 59916-60332 bp Feature: domain Description: Bcp Location: 60036-60315 bp Feature: domain Description: Bcp Location: 60036-60315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bcp (COG1225), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHFW010000058.1 Okeania sp. SIO1F9 1F9_NODE_58, whole genome shotgun sequence (43878 bp)
Overview 1 RT 1: 34913-37692 bp Neighborhood of RT #1 [34913, 37781] HTH_OrfB_IS605 RVT-GII OrfB_Zn_ribbon Beta-lactamase2 Feature: gene Location: 34913-35137 bp Feature: domain Description: HTH_OrfB_IS605 Location: 34916-35045 bp Feature: domain Description: HTH_OrfB_IS605 Location: 34916-35045 bp Feature: gene Location: 35198-35500 bp Feature: gene Location: 35612-35899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35624-35873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35624-358 73 bp Feature: gene Location: 35965-36393 bp Feature: domain Description: OrfB_Zn_ribbon Location: 36172-36304 bp Feature: domain Description: OrfB_Zn_ribbon Location: 36172-36304 bp Feature: gene Location: 36477-37781 bp Feature: domain Description: Beta-lactamase2 Location: 37086-37692 bp Feature: domain Description: Beta-lactamase2 Location: 3708 6-37692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_OrfB_IS605 (pfam12323), RVT-GII, OrfB_Zn_ribbon (pfam07282), Beta-lactamase2 (pfam13354)

Seq: JAAHFW010000059.1 Okeania sp. SIO1F9 1F9_NODE_59, whole genome shotgun sequence (43406 bp)
Overview 1 RT 1: 14689-20467 bp Neighborhood of RT #1 [14689, 20467] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 14689-15078 bp Feature: gene Location: 15353-15835 bp Feature: domain Description: ThyX Location: 15356-15812 bp Feature: domain Description: ThyX Location: 15356-15812 bp Feature: gene Location: 16034-16981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16073-16304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16073-16304 bp Feature: domain Description: GIIM Note: maturase Location: 16379-16610 bp Feature: domain Description: GIIM Note: maturase Location: 16379 -16610 bp Feature: domain Description: McrA Location: 16685-16970 bp Feature: domain Description: McrA Location: 16685-169 70 bp Feature: gene Location: 16959-17864 bp Feature: domain Description: RVT_N Location: 17127-17370 bp Feature: domain Description: RVT_N Location: 17127-17370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17418-17799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17418-1779 9 bp Feature: gene Location: 19070-19246 bp Feature: domain Description: RVT_N Location: 19076-19226 bp Feature: domain Description: RVT_N Location: 19 076-19 226 bp Feature: gene Location: 20279-20467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHFW010000067.1 Okeania sp. SIO1F9 1F9_NODE_67, whole genome shotgun sequence (39413 bp)
Overview 1 RT 1: 12300-21744 bp Neighborhood of RT #1 [12300, 22874] YkfC RVT-GII GIIM Neuraminidase TcA_TcB_BD VRP1 Laminin_G_3 Feature: gene Location: 12300-12560 bp Feature: gene Location: 12642-12854 bp Feature: gene Location: 13621-15045 bp Feature: domain Description: YkfC Location: 13675-13843 bp Feature: domain Description: YkfC Location: 13675-13843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13924-14578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13924-14578 bp Feature: domain Description: GIIM Note: maturase Location: 14656-14890 bp Feature: domain Description: GIIM Note: maturase Location: 14656-14890 bp Feature: gene Location: 15587-20839 bp Feature: domain Description: Neuraminidase Location: 17393-17627 bp Feature: domain Description: Neuraminidase Location: 17393-17627 bp Feature: domain Description: TcA_TcB_BD Location: 20018-20831 bp Feature: domain Description: TcA_TcB_BD Location: 20018-20831 bp Feature: gene Location: 20826-22874 bp Feature: domain Description: VRP1 Location: 21057-21267 bp Feature: domain Description: VRP1 Location: 210 57-21267 bp Feature: domain Description: Laminin_G_3 Location: 21297-21744 bp Feature: domain Description: Laminin_G_3 Location: 21297-21744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), Neuraminidase (pfam18413), TcA_TcB_BD (pfam18276), VRP1 (pfam03538), Laminin_G_3 (pfam13385)