myRT

myRT report for GCA_010672755.1_ASM1067275v1

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Seq: JAAHFV010000102.1 Moorea sp. SIO1F2 1F2_NODE_102, whole genome shotgun sequence (17996 bp)
Overview 1 RT 1: 9328-13782 bp Neighborhood of RT #1 [9328, 13782] InsQ RVT_N RVT-GII YkfC HNHc Feature: gene Location: 9328-10233 bp Feature: gene Location: 10375-10761 bp Feature: domain Description: InsQ Location: 10381-10615 bp Feature: domain Description: InsQ Location: 1 0381 -1 061 5 bp Feature: gene Location: 11036-12871 bp Feature: domain Description: RVT_N Location: 11099-11345 bp Feature: domain Description: RVT_N Location: 1 1 099-1 1 345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11393-12065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 393-1 2065 bp Feature: domain Description: YkfC Location: 12218-12371 bp Feature: domain Description: YkfC Location: 1 221 8-1 2371 bp Feature: domain Description: HNHc Note: nucleases Location: 12578-12743 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2578-1 2743 bp Feature: gene Location: 12806-13207 bp Feature: gene Location: 13270-13782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JAAHFV010000114.1 Moorea sp. SIO1F2 1F2_NODE_114, whole genome shotgun sequence (17245 bp)
Overview 1 RT 1: 12147-17126 bp Neighborhood of RT #1 [12147, 17140] HATPase_FilI-like InsQ RVT_N RVT-GII RVT-GII GIIM McrA SLC5sbd_PutP Feature: gene Location: 12147-12488 bp Feature: domain Description: HATPase_FilI-like Location: 12252-12474 bp Feature: domain Description: HATPase_FilI-like Location: 12 2 52 -12 474 bp Feature: gene Location: 12548-13618 bp Feature: domain Description: InsQ Location: 12653-13613 bp Feature: domain Description: InsQ Location: 12 653-13613 bp Feature: gene Location: 14184-14612 bp Feature: domain Description: RVT_N Location: 14229-14475 bp Feature: domain Description: RVT_N Location: 142 2 9-14475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14517-14601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14517-14601 bp Feature: gene Location: 14707-15903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14713-15169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14713-15169 bp Feature: domain Description: GIIM Note: maturase Location: 15247-15481 bp Feature: domain Description: GIIM Note: maturase Location: 152 47-15481 bp Feature: domain Description: McrA Location: 15595-15865 bp Feature: domain Description: McrA Location: 15595-15865 bp Feature: gene Location: 16110-16301 bp Feature: gene Location: 16784-17140 bp Feature: domain Description: SLC5sbd_PutP Location: 16808-17126 bp Feature: domain Description: SLC5sbd_PutP Location: 16808-1712 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_FilI-like (cd16921), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), SLC5sbd_PutP (cd11475)

Seq: JAAHFV010000180.1 Moorea sp. SIO1F2 1F2_NODE_180, whole genome shotgun sequence (12972 bp)
Overview 1 RT 1: 4246-7912 bp Neighborhood of RT #1 [4246, 7968] OrfB_Zn_ribbon RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 4246-4419 bp Feature: gene Location: 4545-4838 bp Feature: domain Description: OrfB_Zn_ribbon Location: 4551-4728 bp Feature: domain Description: OrfB_Zn_ribbon Location: 4551-4728 bp Feature: gene Location: 5216-6979 bp Feature: domain Description: RVT_N Location: 5261-5507 bp Feature: domain Description: RVT_N Location: 5261-5507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5549-6218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5549-6218 bp Feature: domain Description: GIIM Note: maturase Location: 6332-6530 bp Feature: domain Description: GIIM Note: maturase Location: 63 3 2-653 0 bp Feature: domain Description: HNHc Note: nucleases Location: 6740-6908 bp Feature: domain Description: HNHc Note: nucleases Location: 6740-6908 bp Feature: gene Location: 7012-7179 bp Feature: gene Location: 7501-7968 bp Feature: domain Description: InsQ Location: 7525-7912 bp Feature: domain Description: InsQ Location: 7525-7912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OrfB_Zn_ribbon (pfam07282), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: JAAHFV010000245.1 Moorea sp. SIO1F2 1F2_NODE_245, whole genome shotgun sequence (9989 bp)
Overview 1 RT 1: 65-5587 bp Neighborhood of RT #1 [65, 5587] UvrD-helicase UvrD_C RVT-UG25 Feature: gene Location: 65-2158 bp Feature: domain Description: UvrD-helicase Location: 131-506 bp Feature: domain Description: UvrD-helicase Location: 131-506 bp Feature: domain Description: UvrD_C Location: 521-2087 bp Feature: domain Description: UvrD_C Location: 521-2087 bp Feature: gene Location: 2155-3480 bp Feature: gene Location: 3604-4881 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3652-4051 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3652-4 051 bp Feature: gene Location: 4888-5211 bp Feature: gene Location: 5456-5587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD-helicase (pfam00580), UvrD_C (pfam13361), RVT-UG25

Seq: JAAHFV010000387.1 Moorea sp. SIO1F2 1F2_NODE_387, whole genome shotgun sequence (5813 bp)
Overview 1 RT 1: 1044-3789 bp Neighborhood of RT #1 [1044, 3789] RVT_N RVT-GII GIIM McrA Feature: gene Location: 1044-2762 bp Feature: domain Description: RVT_N Location: 1089-1335 bp Feature: domain Description: RVT_N Location: 1089-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377-2028 bp Feature: domain Description: GIIM Note: maturase Location: 2106-2340 bp Feature: domain Description: GIIM Note: maturase Location: 2106-2340 bp Feature: domain Description: McrA Location: 2421-2727 bp Feature: domain Description: McrA Location: 2421-2727 bp Feature: gene Location: 2994-3251 bp Feature: gene Location: 3571-3789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHFV010000411.1 Moorea sp. SIO1F2 1F2_NODE_411, whole genome shotgun sequence (5386 bp)
Overview 1 RT 1: 139-5189 bp Neighborhood of RT #1 [139, 5191] RVT_N RVT-GII GIIM McrA tspaseT_teng_C PRK07811 Feature: gene Location: 139-270 bp Feature: gene Location: 467-1957 bp Feature: domain Description: RVT_N Location: 494-740 bp Feature: domain Description: RVT_N Location: 494-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1448-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1448-16 25 bp Feature: domain Description: McrA Location: 1646-1946 bp Feature: domain Description: McrA Location: 16 46 -1946 bp Feature: gene Location: 2516-3913 bp Feature: domain Description: tspaseT_teng_C Location: 3587-3719 bp Feature: domain Description: tspaseT_teng_C Location: 3587-3719 bp Feature: gene Location: 4073-5191 bp Feature: domain Description: PRK07811 Location: 4079-5189 bp Feature: domain Description: PRK07811 Location: 4079-5189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), tspaseT_teng_C (TIGR01766), PRK07811 (cystathionine gamma-synthase; Provisional)

Seq: JAAHFV010000426.1 Moorea sp. SIO1F2 1F2_NODE_426, whole genome shotgun sequence (5060 bp)
Overview 1 RT 1: 1744-4453 bp Neighborhood of RT #1 [1744, 4680] EamA EamA HNH RVT_N RVT-GII GIIM Feature: gene Location: 1744-2730 bp Feature: domain Description: EamA Location: 1789-2185 bp Feature: domain Description: EamA Location: 17 89-2185 bp Feature: domain Description: EamA Location: 2272-2674 bp Feature: domain Description: EamA Location: 227 2-267 4 bp Feature: gene Location: 2962-3102 bp Feature: domain Description: HNH Note: nucleases Location: 2968-3058 bp Feature: domain Description: HNH Note: nucleases Location: 2968-3058 bp Feature: gene Location: 3229-4680 bp Feature: domain Description: RVT_N Location: 3235-3448 bp Feature: domain Description: RVT_N Location: 3235-3448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490-4141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3490-4141 bp Feature: domain Description: GIIM Note: maturase Location: 4228-4453 bp Feature: domain Description: GIIM Note: maturase Location: 4228-4453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EamA (pfam00892), HNH (pfam01844), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHFV010000005.1 Moorea sp. SIO1F2 1F2_NODE_5, whole genome shotgun sequence (57531 bp)
Overview 1 RT 1: 50029-56923 bp Neighborhood of RT #1 [50029, 57168] WGR_DNA_ligase HEAT_2 HEAT_2 SWIM RVT-Retrons Feature: gene Location: 50029-53226 bp Feature: domain Description: WGR_DNA_ligase Location: 50044-50269 bp Feature: domain Description: WGR_DNA_ligase Location: 50044-50269 bp Feature: domain Description: HEAT_2 Location: 50449-50659 bp Feature: domain Description: HEAT_2 Location: 50449-50659 bp Feature: domain Description: HEAT_2 Location: 50776-50890 bp Feature: domain Description: HEAT_2 Location: 50776-508 90 bp Feature: gene Location: 53671-55311 bp Feature: domain Description: SWIM Location: 55198-55282 bp Feature: domain Description: SWIM Location: 55198 -5528 2 bp Feature: gene Location: 55756-57168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56302-56923 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56302-56923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), SWIM (pfam04434), RVT-Retrons

Seq: JAAHFV010000567.1 Moorea sp. SIO1F2 1F2_NODE_567, whole genome shotgun sequence (2624 bp)
Overview 1 RT 1: 2-2372 bp Neighborhood of RT #1 [2, 2515] RVT_N RVT-GII RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 2-220 bp Feature: gene Location: 665-925 bp Feature: domain Description: RVT_N Location: 728-890 bp Feature: domain Description: RVT_N Location: 728-89 0 bp Feature: gene Location: 960-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1104 bp Feature: gene Location: 1285-1422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306-1411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306-1411 bp Feature: gene Location: 1439-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149 9 -169 7 bp Feature: domain Description: GIIM Note: maturase Location: 1769-2003 bp Feature: domain Description: GIIM Note: maturase Location: 1769 -2003 bp Feature: domain Description: HNHc Note: nucleases Location: 2216-2372 bp Feature: domain Description: HNHc Note: nucleases Location: 2216-2372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHFV010000571.1 Moorea sp. SIO1F2 1F2_NODE_571, whole genome shotgun sequence (2569 bp)
Overview 1 RT 1: 97-2568 bp Neighborhood of RT #1 [97, 2568] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 97-1926 bp Feature: domain Description: RVT_N Location: 160-406 bp Feature: domain Description: RVT_N Location: 160-406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454-1120 bp Feature: domain Description: GIIM Note: maturase Location: 1195-1426 bp Feature: domain Description: GIIM Note: maturase Location: 1195-1426 bp Feature: domain Description: HNHc Note: nucleases Location: 1636-1798 bp Feature: domain Description: HNHc Note: nucleases Location: 1636-1798 bp Feature: gene Location: 2365-2568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHFV010000590.1 Moorea sp. SIO1F2 1F2_NODE_590, whole genome shotgun sequence (2241 bp)
Overview 1 RT 1: 2-2166 bp Neighborhood of RT #1 [2, 2166] SBP_bac_11 RVT-UG4 RVT-UG4 Feature: gene Location: 2-400 bp Feature: domain Description: SBP_bac_11 Location: 14-365 bp Feature: domain Description: SBP_bac_11 Location: 14-365 bp Feature: gene Location: 529-981 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 568-742 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 568-742 bp Feature: gene Location: 1017-1715 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1491-1683 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1491-1683 bp Feature: gene Location: 1957-2166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SBP_bac_11 (pfam13531), RVT-UG4

Seq: JAAHFV010000596.1 Moorea sp. SIO1F2 1F2_NODE_596, whole genome shotgun sequence (2177 bp)
Overview 1 RT 1: 79-1552 bp Neighborhood of RT #1 [79, 1587] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 79-1587 bp Feature: domain Description: RVT_N Location: 103-349 bp Feature: domain Description: RVT_N Location: 103-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-994 bp Feature: domain Description: GIIM Note: maturase Location: 1051-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1051-12 40 bp Feature: domain Description: McrA Location: 1243-1552 bp Feature: domain Description: McrA Location: 12 43-1552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)