myRT

myRT report for GCA_010672825.1_ASM1067282v1

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Seq: JAAHFU010000001.1 Leptolyngbya sp. SIO1E4 1E4_NODE_1, whole genome shotgun sequence (2765123 bp)
Overview 1 RT 1: 1444298-1447690 bp Neighborhood of RT #1 [1444298, 1447749] COG3440 RVT-Retrons AlbA_2 TPR TPR_8 TPR HTH_XRE Feature: gene Location: 1444298-1444534 bp Feature: gene Location: 1444544-1444864 bp Feature: domain Description: COG3440 Location: 1444574-1444802 bp Feature: domain Description: COG3440 Location: 1 444574-1 444802 bp Feature: gene Location: 1444916-1445647 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1444919-1445342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 44491 9-1 445342 bp Feature: gene Location: 1446226-1447272 bp Feature: domain Description: AlbA_2 Location: 1446274-1446700 bp Feature: domain Description: AlbA_2 Location: 1 446274-1 446700 bp Feature: domain Description: TPR Location: 1446835-1447021 bp Feature: domain Description: TPR Location: 1 446835-1 447021 bp Feature: domain Description: TPR_8 Location: 1447030-1447111 bp Feature: domain Description: TPR_8 Location: 1 447030-1 4471 1 1 bp Feature: domain Description: TPR Location: 1447129-1447210 bp Feature: domain Description: TPR Location: 1 4471 29-1 44721 0 bp Feature: gene Location: 1447513-1447749 bp Feature: domain Description: HTH_XRE Location: 1447528-1447690 bp Feature: domain Description: HTH_XRE Location: 1 447528-1 447690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3440 (Predicted restriction endonuclease ), RVT-Retrons, AlbA_2 (pfam04326), TPR (smart00028), TPR_8 (pfam13181), HTH_XRE (smart00530)

Seq: JAAHFU010000011.1 Leptolyngbya sp. SIO1E4 1E4_NODE_11, whole genome shotgun sequence (115580 bp)
Overview 1 RT 1: 79667-84975 bp Neighborhood of RT #1 [79667, 84995] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 79667-80803 bp Feature: gene Location: 81294-82184 bp Feature: domain Description: YfmG Location: 81447-82164 bp Feature: domain Description: YfmG Location: 81447-82 164 bp Feature: gene Location: 82108-82995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82312-82957 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82 312 -82 957 bp Feature: gene Location: 82992-83330 bp Feature: domain Description: Avd_like Location: 83010-83316 bp Feature: domain Description: Avd_like Location: 83010-83316 bp Feature: gene Location: 83424-84995 bp Feature: domain Description: YfmG Location: 84162-84975 bp Feature: domain Description: YfmG Location: 84162 -84975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAAHFU010000030.1 Leptolyngbya sp. SIO1E4 1E4_NODE_30, whole genome shotgun sequence (42712 bp)
Overview 1 RT 1: 19802-22433 bp Neighborhood of RT #1 [19802, 22433] RVT-GII HTH_XRE AAA_16 Feature: gene Location: 19802-19942 bp Feature: gene Location: 19951-20115 bp Feature: gene Location: 20136-20381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20325-20376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 25-203 76 bp Feature: gene Location: 20547-22007 bp Feature: domain Description: HTH_XRE Location: 20667-20796 bp Feature: domain Description: HTH_XRE Location: 20667-20796 bp Feature: domain Description: AAA_16 Location: 20883-21294 bp Feature: domain Description: AAA_16 Location: 20883 -21294 bp Feature: gene Location: 22134-22433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_XRE (smart00530), AAA_16 (pfam13191)