myRT

myRT report for GCA_010672835.1_ASM1067283v1

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Seq: JAAHFT010001037.1 Cyanothece sp. SIO1E1 1E1_NODE_1037, whole genome shotgun sequence (2585 bp)
Overview 1 RT 1: 1-2584 bp Neighborhood of RT #1 [1, 2584] group_II_RT_mat RVT-UG13 RMtype1_S_BliBORF2384P-TRD1-CR1_like RMtype1_S_BliBORF2384P-TRD1-CR1_like Feature: gene Location: 1-645 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76-388 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76-388 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 424-646 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 424-646 bp Feature: gene Location: 648-1919 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 684-1212 bp Feature: domain Description: RMtype1 _S_BliBORF2384P-TRD1 -CR1 _like Location: 684-1 21 2 bp Feature: domain Description: RMtype1_S_BliBORF2384P-TRD1-CR1_like Location: 1611-1890 bp Feature: domain Description: RMtype1 _S_BliBORF2384P-TRD1 -CR1 _like Location: 1 61 1 -1 890 bp Feature: gene Location: 1916-2584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG13, RMtype1_S_BliBORF2384P-TRD1-CR1_like (cd17496)

Seq: JAAHFT010001065.1 Cyanothece sp. SIO1E1 1E1_NODE_1065, whole genome shotgun sequence (2413 bp)
Overview 1 RT 1: 2-2306 bp Neighborhood of RT #1 [2, 2329] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-259 bp Feature: gene Location: 647-2329 bp Feature: domain Description: RVT_N Location: 689-935 bp Feature: domain Description: RVT_N Location: 689-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1631 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1937 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1937 bp Feature: domain Description: HNHc Note: nucleases Location: 2141-2306 bp Feature: domain Description: HNHc Note: nucleases Location: 2 141-2 306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHFT010001096.1 Cyanothece sp. SIO1E1 1E1_NODE_1096, whole genome shotgun sequence (2193 bp)
Overview 1 RT 1: 87-1593 bp Neighborhood of RT #1 [87, 1622] RVT_N RVT-GII GIIM McrA Feature: gene Location: 87-1622 bp Feature: domain Description: RVT_N Location: 117-363 bp Feature: domain Description: RVT_N Location: 117-3 63 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-103 8 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1245 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1245 bp Feature: domain Description: McrA Location: 1350-1593 bp Feature: domain Description: McrA Location: 13 50-1593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHFT010001141.1 Cyanothece sp. SIO1E1 1E1_NODE_1141, whole genome shotgun sequence (1961 bp)
Overview 1 RT 1: 2-1775 bp Neighborhood of RT #1 [2, 1775] DDE_Tnp_1_assoc HTH_MerR-trunc RVT_N RVT-GII Feature: gene Location: 2-316 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 26-287 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 26-287 bp Feature: gene Location: 315-689 bp Feature: domain Description: HTH_MerR-trunc Location: 480-591 bp Feature: domain Description: HTH_MerR-trunc Location: 4 80-591 bp Feature: gene Location: 779-1171 bp Feature: domain Description: RVT_N Location: 824-1070 bp Feature: domain Description: RVT_N Location: 824 -1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118-1163 bp Feature: gene Location: 1587-1775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), HTH_MerR-trunc (cd04762), RVT_N (pfam13655), RVT-GII

Seq: JAAHFT010001215.1 Cyanothece sp. SIO1E1 1E1_NODE_1215, whole genome shotgun sequence (1688 bp)
Overview 1 RT 1: 122-1322 bp Neighborhood of RT #1 [122, 1663] RVT-UG7 Methyltransf_25 Feature: gene Location: 122-433 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 131-431 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 131-431 bp Feature: gene Location: 469-741 bp Feature: gene Location: 926-1663 bp Feature: domain Description: Methyltransf_25 Location: 1040-1322 bp Feature: domain Description: Methyltransf_25 Location: 1040-1322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, Methyltransf_25 (pfam13649)

Seq: JAAHFT010000243.1 Cyanothece sp. SIO1E1 1E1_NODE_243, whole genome shotgun sequence (13408 bp)
Overview 1 RT 1: 4296-9355 bp Neighborhood of RT #1 [4296, 9355] 23S_rRNA_IVP Cas2_I_II_III RVT-CRISPR Cas1_I-II-III NACHT Feature: gene Location: 4296-4682 bp Feature: domain Description: 23S_rRNA_IVP Location: 4329-4629 bp Feature: domain Description: 23S_rRNA_IVP Location: 4329-46 29 bp Feature: gene Location: 4770-5048 bp Feature: domain Description: Cas2_I_II_III Location: 4779-5010 bp Feature: domain Description: Cas2_I_II_III Location: 4779-5010 bp Feature: gene Location: 5048-7024 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5237-5846 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5237-5846 bp Feature: domain Description: Cas1_I-II-III Location: 6029-6983 bp Feature: domain Description: Cas1_I-II-III Location: 6 029-6 983 bp Feature: gene Location: 7271-8701 bp Feature: domain Description: NACHT Location: 7643-8138 bp Feature: domain Description: NACHT Location: 76 43-8138 bp Feature: gene Location: 9134-9355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), NACHT (pfam05729)

Seq: JAAHFT010000029.1 Cyanothece sp. SIO1E1 1E1_NODE_29, whole genome shotgun sequence (30231 bp)
Overview 1 RT 1: 6318-9470 bp Neighborhood of RT #1 [6318, 9484] Avd_like 23S_rRNA_IVP_like RVT-DGRs YfmG Feature: gene Location: 6318-6671 bp Feature: domain Description: Avd_like Location: 6342-6651 bp Feature: domain Description: Avd_like Location: 6342-6651 bp Feature: gene Location: 6696-7064 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 6738-7047 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 67 38-7 047 bp Feature: gene Location: 7168-8289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7378-8017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 37 8-8017 bp Feature: gene Location: 8363-8596 bp Feature: gene Location: 8672-9484 bp Feature: domain Description: YfmG Location: 8702-9470 bp Feature: domain Description: YfmG Location: 87 02-947 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), 23S_rRNA_IVP_like (cd16377), RVT-DGRs, YfmG (COG1262)

Seq: JAAHFT010000910.1 Cyanothece sp. SIO1E1 1E1_NODE_910, whole genome shotgun sequence (3364 bp)
Overview 1 RT 1: 1-1927 bp Neighborhood of RT #1 [1, 1927] RVT-GII GIIM McrA DUF5372 Feature: gene Location: 1-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-628 bp Feature: domain Description: GIIM Note: maturase Location: 712-940 bp Feature: domain Description: GIIM Note: maturase Location: 712-940 bp Feature: domain Description: McrA Location: 1030-1291 bp Feature: domain Description: McrA Location: 1030-1291 bp Feature: gene Location: 1245-1571 bp Feature: domain Description: DUF5372 Location: 1332-1488 bp Feature: domain Description: DUF5372 Location: 1332-148 8 bp Feature: gene Location: 1790-1927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF5372 (pfam17342)

Seq: JAAHFT010000911.1 Cyanothece sp. SIO1E1 1E1_NODE_911, whole genome shotgun sequence (3357 bp)
Overview 1 RT 1: 1-3236 bp Neighborhood of RT #1 [1, 3265] RVT-GII COG5635 COG5635 Feature: gene Location: 1-132 bp Feature: gene Location: 290-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617-1301 bp Feature: gene Location: 1672-1905 bp Feature: gene Location: 2288-3265 bp Feature: domain Description: COG5635 Location: 2306-2813 bp Feature: domain Description: COG5635 Location: 2306-2813 bp Feature: domain Description: COG5635 Location: 2858-3236 bp Feature: domain Description: COG5635 Location: 2858-3236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG5635 (Predicted NTPase, NACHT family domain )