myRT

myRT report for GCA_010672865.1_ASM1067286v1

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Seq: JAAHFS010000180.1 Kamptonema sp. SIO1D9 1D9_NODE_180, whole genome shotgun sequence (9087 bp)
Overview 1 RT 1: 2973-9011 bp Neighborhood of RT #1 [2973, 9085] RVT-CRISPR Cas1_I-II-III InsQ Feature: gene Location: 2973-3188 bp Feature: gene Location: 3320-3625 bp Feature: gene Location: 3993-5975 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4182-4791 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 41 82-4791 bp Feature: domain Description: Cas1_I-II-III Location: 4974-5937 bp Feature: domain Description: Cas1 _I-II-III Location: 4974-5937 bp Feature: gene Location: 6295-8586 bp Feature: gene Location: 8678-9085 bp Feature: domain Description: InsQ Location: 8702-9011 bp Feature: domain Description: InsQ Location: 8702-901 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), InsQ (COG0675)

Seq: JAAHFS010000190.1 Kamptonema sp. SIO1D9 1D9_NODE_190, whole genome shotgun sequence (8196 bp)
Overview 1 RT 1: 301-3771 bp Neighborhood of RT #1 [301, 4103] GIIM McrA RVT_N RVT-GII NB-ARC Feature: gene Location: 301-846 bp Feature: domain Description: GIIM Note: maturase Location: 316-496 bp Feature: domain Description: GIIM Note: maturase Location: 316-496 bp Feature: domain Description: McrA Location: 505-838 bp Feature: domain Description: McrA Location: 505-838 bp Feature: gene Location: 859-1845 bp Feature: domain Description: RVT_N Location: 892-1138 bp Feature: domain Description: RVT_N Location: 892 -1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189-1813 bp Feature: gene Location: 1951-2166 bp Feature: gene Location: 2781-4103 bp Feature: domain Description: NB-ARC Location: 3159-3771 bp Feature: domain Description: NB-ARC Location: 3159-3771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), RVT-GII, NB-ARC (pfam00931)

Seq: JAAHFS010000241.1 Kamptonema sp. SIO1D9 1D9_NODE_241, whole genome shotgun sequence (4853 bp)
Overview 1 RT 1: 1356-4815 bp Neighborhood of RT #1 [1356, 4815] BcsQ RVT-Retrons Feature: gene Location: 1356-1655 bp Feature: gene Location: 1688-2569 bp Feature: domain Description: BcsQ Location: 1691-2546 bp Feature: domain Description: BcsQ Location: 1691-2546 bp Feature: gene Location: 2782-4491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3418-4033 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 418-403 3 bp Feature: gene Location: 4531-4815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), RVT-Retrons