myRT

myRT report for GCA_010672885.1_ASM1067288v1

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Seq: JAAHFQ010001026.1 Symploca sp. SIO1C4 1C4_NODE_1026, whole genome shotgun sequence (2183 bp)
Overview 1 RT 1: 2-1971 bp Neighborhood of RT #1 [2, 1971] McrA RVT_N RVT-GII GIIM Feature: gene Location: 2-418 bp Feature: domain Description: McrA Location: 131-404 bp Feature: domain Description: McrA Location: 1 31 -404 bp Feature: gene Location: 442-1704 bp Feature: domain Description: RVT_N Location: 475-721 bp Feature: domain Description: RVT_N Location: 475-721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1 432 bp Feature: domain Description: GIIM Note: maturase Location: 1531-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1 531 -1 663 bp Feature: gene Location: 1813-1971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHFQ010001236.1 Symploca sp. SIO1C4 1C4_NODE_1236, whole genome shotgun sequence (1125 bp)
Overview 1 RT 1: 1-1123 bp Neighborhood of RT #1 [1, 1123] RVT-GII BcsQ Feature: gene Location: 1-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-682 bp Feature: domain Description: BcsQ Location: 709-976 bp Feature: domain Description: BcsQ Location: 709-976 bp Feature: gene Location: 992-1123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, BcsQ (COG1192)

Seq: JAAHFQ010000015.1 Symploca sp. SIO1C4 1C4_NODE_15, whole genome shotgun sequence (12006 bp)
Overview 1 RT 1: 3891-11957 bp Neighborhood of RT #1 [3891, 12004] RVT_N RVT-GII GIIM HNH_5 McrA RVT_N RVT-GII RRXRR Feature: gene Location: 3891-4064 bp Feature: gene Location: 4868-5125 bp Feature: gene Location: 6239-7909 bp Feature: domain Description: RVT_N Location: 6299-6545 bp Feature: domain Description: RVT_N Location: 6299-6545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-7274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-7274 bp Feature: domain Description: GIIM Note: maturase Location: 7394-7622 bp Feature: domain Description: GIIM Note: maturase Location: 73 94-7622 bp Feature: gene Location: 8556-9191 bp Feature: domain Description: HNH_5 Location: 8685-8832 bp Feature: domain Description: HNH_5 Location: 8685-883 2 bp Feature: gene Location: 9184-9708 bp Feature: domain Description: McrA Location: 9319-9601 bp Feature: domain Description: McrA Location: 93 19-9601 bp Feature: gene Location: 9897-10847 bp Feature: domain Description: RVT_N Location: 9936-10182 bp Feature: domain Description: RVT_N Location: 993 6-10182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10224-10839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10224-1083 9 bp Feature: gene Location: 11429-12004 bp Feature: domain Description: RRXRR Location: 11441-11957 bp Feature: domain Description: RRXRR Location: 11441-11957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH_5 (pfam14279), McrA (COG4058), RRXRR (pfam14239)

Seq: JAAHFQ010000234.1 Symploca sp. SIO1C4 1C4_NODE_234, whole genome shotgun sequence (8881 bp)
Overview 1 RT 1: 872-5039 bp Neighborhood of RT #1 [872, 5053] RNRR2 RVT_N RVT-GII GIIM HNHc NrdF Feature: gene Location: 872-1012 bp Feature: gene Location: 1236-1601 bp Feature: domain Description: RNRR2 Location: 1239-1581 bp Feature: domain Description: RNRR2 Location: 1239-1581 bp Feature: gene Location: 2239-4113 bp Feature: domain Description: RVT_N Location: 2305-2551 bp Feature: domain Description: RVT_N Location: 2305-2551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593-3313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593-3313 bp Feature: domain Description: GIIM Note: maturase Location: 3412-3646 bp Feature: domain Description: GIIM Note: maturase Location: 34 12-364 6 bp Feature: domain Description: HNHc Note: nucleases Location: 3856-3988 bp Feature: domain Description: HNHc Note: nucleases Location: 3856-3988 bp Feature: gene Location: 4226-4552 bp Feature: gene Location: 4622-5053 bp Feature: domain Description: NrdF Location: 4628-5039 bp Feature: domain Description: NrdF Location: 4 628-5039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNRR2 (cd01049), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), NrdF (COG0208)

Seq: JAAHFQ010000288.1 Symploca sp. SIO1C4 1C4_NODE_288, whole genome shotgun sequence (7944 bp)
Overview 1 RT 1: 192-4347 bp Neighborhood of RT #1 [192, 4385] Cas_csx3 Cas_csx3 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 192-1526 bp Feature: domain Description: Cas_csx3 Location: 393-531 bp Feature: domain Description: Cas_csx3 Location: 393-5 31 bp Feature: domain Description: Cas_csx3 Location: 738-927 bp Feature: domain Description: Cas_csx3 Location: 738-927 bp Feature: gene Location: 1658-1909 bp Feature: gene Location: 1933-2964 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2188-2794 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2188-2794 bp Feature: gene Location: 3105-4109 bp Feature: domain Description: Cas1_I-II-III Location: 3117-4071 bp Feature: domain Description: Cas1_I-II-III Location: 3117-4071 bp Feature: gene Location: 4110-4385 bp Feature: domain Description: Cas2_I_II_III Location: 4119-4347 bp Feature: domain Description: Cas2_I_II_III Location: 4119-4347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_csx3 (pfam09620), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: JAAHFQ010000330.1 Symploca sp. SIO1C4 1C4_NODE_330, whole genome shotgun sequence (7475 bp)
Overview 1 RT 1: 1266-6170 bp Neighborhood of RT #1 [1266, 6175] InsQ RVT_N RVT-GII GIIM McrA MoxR Feature: gene Location: 1266-2381 bp Feature: domain Description: InsQ Location: 1272-2340 bp Feature: domain Description: InsQ Location: 1272-2340 bp Feature: gene Location: 2539-2823 bp Feature: gene Location: 3005-4819 bp Feature: domain Description: RVT_N Location: 3038-3281 bp Feature: domain Description: RVT_N Location: 3038-3281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3326-4022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3326 -4022 bp Feature: domain Description: GIIM Note: maturase Location: 4121-4352 bp Feature: domain Description: GIIM Note: maturase Location: 4121-4352 bp Feature: domain Description: McrA Location: 4445-4727 bp Feature: domain Description: McrA Location: 4445-4727 bp Feature: gene Location: 4852-5112 bp Feature: gene Location: 5057-6175 bp Feature: domain Description: MoxR Location: 5261-6170 bp Feature: domain Description: MoxR Location: 526 1-6 170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), MoxR (COG0714)

Seq: JAAHFQ010000374.1 Symploca sp. SIO1C4 1C4_NODE_374, whole genome shotgun sequence (6918 bp)
Overview 1 RT 1: 233-2578 bp Neighborhood of RT #1 [233, 2578] RVT-UG4 Feature: gene Location: 233-1273 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 575-1052 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 57 5-1052 bp Feature: gene Location: 1432-2100 bp Feature: gene Location: 2354-2578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHFQ010000438.1 Symploca sp. SIO1C4 1C4_NODE_438, whole genome shotgun sequence (6198 bp)
Overview 1 RT 1: 924-4449 bp Neighborhood of RT #1 [924, 4449] RVT_N RVT-GII GIIM McrA Feature: gene Location: 924-1175 bp Feature: gene Location: 1208-1462 bp Feature: gene Location: 1699-3255 bp Feature: domain Description: RVT_N Location: 1735-1981 bp Feature: domain Description: RVT_N Location: 1735-198 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032-2626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032-2626 bp Feature: domain Description: GIIM Note: maturase Location: 2683-2857 bp Feature: domain Description: GIIM Note: maturase Location: 268 3-28 57 bp Feature: domain Description: McrA Location: 2878-3181 bp Feature: domain Description: McrA Location: 28 78 -318 1 bp Feature: gene Location: 3771-4079 bp Feature: gene Location: 4060-4449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHFQ010000554.1 Symploca sp. SIO1C4 1C4_NODE_554, whole genome shotgun sequence (5229 bp)
Overview 1 RT 1: 2572-5188 bp Neighborhood of RT #1 [2572, 5226] AAA_35 HTH_26 GrpE RVT-GII Feature: gene Location: 2572-3615 bp Feature: domain Description: AAA_35 Location: 2581-3319 bp Feature: domain Description: AAA_35 Location: 2581-3319 bp Feature: gene Location: 3810-4799 bp Feature: domain Description: HTH_26 Location: 3858-4032 bp Feature: domain Description: HTH_26 Location: 3858-4032 bp Feature: domain Description: GrpE Location: 4428-4779 bp Feature: domain Description: GrpE Location: 4428-4779 bp Feature: gene Location: 5056-5226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5062-5188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5062-5188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), HTH_26 (pfam13443), GrpE (pfam01025), RVT-GII

Seq: JAAHFQ010000758.1 Symploca sp. SIO1C4 1C4_NODE_758, whole genome shotgun sequence (3654 bp)
Overview 1 RT 1: 2-3577 bp Neighborhood of RT #1 [2, 3651] RVT_N RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-1066 bp Feature: domain Description: RVT_N Location: 107-350 bp Feature: domain Description: RVT_N Location: 10 7-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395-10 43 bp Feature: gene Location: 1179-1397 bp Feature: gene Location: 1456-1689 bp Feature: gene Location: 2014-3651 bp Feature: domain Description: RVT_N Location: 2017-2242 bp Feature: domain Description: RVT_N Location: 2017-2242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2284-2935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2284-2935 bp Feature: domain Description: GIIM Note: maturase Location: 3016-3247 bp Feature: domain Description: GIIM Note: maturase Location: 3016-3247 bp Feature: domain Description: HNHc Note: nucleases Location: 3421-3577 bp Feature: domain Description: HNHc Note: nucleases Location: 3421-3577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHFQ010000813.1 Symploca sp. SIO1C4 1C4_NODE_813, whole genome shotgun sequence (3318 bp)
Overview 1 RT 1: 2-3171 bp Neighborhood of RT #1 [2, 3212] Cas_Cas1 RVT-CRISPR Cas1_I-II-III Feature: gene Location: 2-808 bp Feature: domain Description: Cas_Cas1 Location: 20-803 bp Feature: domain Description: Cas_Cas1 Location: 20-803 bp Feature: gene Location: 1084-1575 bp Feature: gene Location: 1956-3212 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1959-2034 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1959-2034 bp Feature: domain Description: Cas1_I-II-III Location: 2217-3171 bp Feature: domain Description: Cas1_I-II-III Location: 2217-3171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cas1 (pfam01867), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JAAHFQ010000869.1 Symploca sp. SIO1C4 1C4_NODE_869, whole genome shotgun sequence (3011 bp)
Overview 1 RT 1: 2-1770 bp Neighborhood of RT #1 [2, 1770] RVT-CRISPR-like rluA_subfam Feature: gene Location: 2-166 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-164 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-164 bp Feature: gene Location: 265-1221 bp Feature: domain Description: rluA_subfam Location: 331-1207 bp Feature: domain Description: rluA_subfam Location: 331-12 07 bp Feature: gene Location: 1627-1770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, rluA_subfam (TIGR00005)

Seq: JAAHFQ010000093.1 Symploca sp. SIO1C4 1C4_NODE_93, whole genome shotgun sequence (14521 bp)
Overview 1 RT 1: 12102-14197 bp Neighborhood of RT #1 [12102, 14277] PRK05385 RVT_N RVT-GII GIIM Feature: gene Location: 12102-12311 bp Feature: domain Description: PRK05385 Location: 12105-12300 bp Feature: domain Description: PRK05385 Location: 12105-12300 bp Feature: gene Location: 12568-12696 bp Feature: gene Location: 13333-14277 bp Feature: domain Description: RVT_N Location: 13369-13537 bp Feature: domain Description: RVT_N Location: 13 369-13 537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13696-13792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 696-13 792 bp Feature: domain Description: GIIM Note: maturase Location: 13966-14197 bp Feature: domain Description: GIIM Note: maturase Location: 13 966-14197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05385 (phosphoribosylaminoimidazole synthetase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHFQ010000935.1 Symploca sp. SIO1C4 1C4_NODE_935, whole genome shotgun sequence (2649 bp)
Overview 1 RT 1: 2-2413 bp Neighborhood of RT #1 [2, 2511] RVT_N RVT_N RVT-GII GIIM McrA Feature: gene Location: 2-187 bp Feature: domain Description: RVT_N Location: 47-185 bp Feature: domain Description: RVT_N Location: 47-185 bp Feature: gene Location: 688-2511 bp Feature: domain Description: RVT_N Location: 724-970 bp Feature: domain Description: RVT_N Location: 724-970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1696 bp Feature: domain Description: GIIM Note: maturase Location: 1804-2029 bp Feature: domain Description: GIIM Note: maturase Location: 1804-2029 bp Feature: domain Description: McrA Location: 2086-2413 bp Feature: domain Description: McrA Location: 2086-2413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)