myRT

myRT report for GCA_010672925.1_ASM1067292v1

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Seq: JAAHFP010000015.1 Symploca sp. SIO1C2 1C2_NODE_15, whole genome shotgun sequence (161025 bp)
Overview 1 RT 1: 314-9772 bp Neighborhood of RT #1 [314, 9786] GT4_WlbH-like OCH1 Glycos_transf_2 Anp1 RVT_N RVT-GII GIIM McrA RVT_N RVT-GII RVT-GII GIIM McrA AcrA Feature: gene Location: 314-1378 bp Feature: domain Description: GT4_WlbH-like Location: 677-1364 bp Feature: domain Description: GT4_WlbH-like Location: 677-1 364 bp Feature: gene Location: 1508-3901 bp Feature: domain Description: OCH1 Location: 1517-2045 bp Feature: domain Description: OCH1 Location: 1 51 7-2045 bp Feature: domain Description: Glycos_transf_2 Location: 2327-2663 bp Feature: domain Description: Glycos_transf_2 Location: 2327-2663 bp Feature: domain Description: Anp1 Location: 3125-3794 bp Feature: domain Description: Anp1 Location: 31 25-3794 bp Feature: gene Location: 3971-5653 bp Feature: domain Description: RVT_N Location: 4130-4376 bp Feature: domain Description: RVT_N Location: 41 30-4376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4424-5018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4424-501 8 bp Feature: domain Description: GIIM Note: maturase Location: 5075-5234 bp Feature: domain Description: GIIM Note: maturase Location: 5075-5234 bp Feature: domain Description: McrA Location: 5264-5573 bp Feature: domain Description: McrA Location: 5264-5573 bp Feature: gene Location: 5903-7483 bp Feature: domain Description: RVT_N Location: 5942-6188 bp Feature: domain Description: RVT_N Location: 5942-61 88 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6239-6665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6239-6665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6665-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6665-6833 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: McrA Location: 7118-7397 bp Feature: domain Description: McrA Location: 71 1 8-7397 bp Feature: gene Location: 8033-8329 bp Feature: gene Location: 8446-9786 bp Feature: domain Description: AcrA Location: 8503-9772 bp Feature: domain Description: AcrA Location: 8503-9772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_WlbH-like (cd03798), OCH1 (COG3774), Glycos_transf_2 (pfam00535), Anp1 (pfam03452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), AcrA (COG0845)

Seq: JAAHFP010000163.1 Symploca sp. SIO1C2 1C2_NODE_163, whole genome shotgun sequence (3750 bp)
Overview 1 RT 1: 3-3518 bp Neighborhood of RT #1 [3, 3664] T5orf172 RVT_N RVT-GII GIIM McrA XerC Feature: gene Location: 3-266 bp Feature: domain Description: T5orf172 Location: 21-234 bp Feature: domain Description: T5orf172 Location: 2 1-2 34 bp Feature: gene Location: 809-2605 bp Feature: domain Description: RVT_N Location: 851-1097 bp Feature: domain Description: RVT_N Location: 851-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1916-2147 bp Feature: domain Description: GIIM Note: maturase Location: 1916-2 147 bp Feature: domain Description: McrA Location: 2213-2507 bp Feature: domain Description: McrA Location: 2 2 13-2 507 bp Feature: gene Location: 2750-2980 bp Feature: gene Location: 2996-3664 bp Feature: domain Description: XerC Location: 3020-3518 bp Feature: domain Description: XerC Location: 302 0-3518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T5orf172 (smart00974), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), XerC (COG4973)

Seq: JAAHFP010000035.1 Symploca sp. SIO1C2 1C2_NODE_35, whole genome shotgun sequence (68995 bp)
Overview 1 RT 1: 14948-20395 bp Neighborhood of RT #1 [14948, 20463] GepA XisI RVT-GII Phytase-like TPR_12 TPR_12 TPR_12 TPR_7 TPR_12 TPR_12 Feature: gene Location: 14948-15373 bp Feature: domain Description: GepA Location: 14954-15338 bp Feature: domain Description: GepA Location: 14954-153 3 8 bp Feature: gene Location: 15483-15818 bp Feature: domain Description: XisI Location: 15486-15810 bp Feature: domain Description: XisI Location: 15486-15810 bp Feature: gene Location: 15843-16118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15846-16071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15846-16071 bp Feature: gene Location: 17117-18307 bp Feature: domain Description: Phytase-like Location: 17297-18251 bp Feature: domain Description: Phytase-like Location: 17297-18251 bp Feature: gene Location: 18523-20463 bp Feature: domain Description: TPR_12 Location: 18733-18874 bp Feature: domain Description: TPR_12 Location: 1873 3 -18874 bp Feature: domain Description: TPR_12 Location: 18982-19168 bp Feature: domain Description: TPR_12 Location: 18982-19168 bp Feature: domain Description: TPR_12 Location: 19444-19660 bp Feature: domain Description: TPR_12 Location: 19444-19660 bp Feature: domain Description: TPR_7 Location: 19828-19930 bp Feature: domain Description: TPR_7 Location: 19828-1993 0 bp Feature: domain Description: TPR_12 Location: 20071-20263 bp Feature: domain Description: TPR_12 Location: 20071-20263 bp Feature: domain Description: TPR_12 Location: 20287-20395 bp Feature: domain Description: TPR_12 Location: 20287-203 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GepA (COG3600), XisI (pfam08869), RVT-GII, Phytase-like (pfam13449), TPR_12 (pfam13424), TPR_7 (pfam13176)

Seq: JAAHFP010000051.1 Symploca sp. SIO1C2 1C2_NODE_51, whole genome shotgun sequence (41718 bp)
Overview 1 RT 1: 8399-11701 bp Neighborhood of RT #1 [8399, 11727] RVT-UG4 MetH2 Feature: gene Location: 8399-8620 bp Feature: gene Location: 8778-9101 bp Feature: gene Location: 9477-10238 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9573-10023 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9573-10023 bp Feature: gene Location: 10502-11257 bp Feature: gene Location: 11527-11727 bp Feature: domain Description: MetH2 Location: 11572-11701 bp Feature: domain Description: MetH2 Location: 11572-11701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, MetH2 (COG1410)

Seq: JAAHFP010000071.1 Symploca sp. SIO1C2 1C2_NODE_71, whole genome shotgun sequence (27183 bp)
Overview 1 RT 1: 11678-16489 bp Neighborhood of RT #1 [11678, 16584] RVT-UG4 SpoVK Feature: gene Location: 11678-11860 bp Feature: gene Location: 12070-12498 bp Feature: gene Location: 12691-13461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12856-13213 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1285 6-13213 bp Feature: gene Location: 13694-14728 bp Feature: gene Location: 14848-16584 bp Feature: domain Description: SpoVK Location: 15820-16489 bp Feature: domain Description: SpoVK Location: 15 820-16489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, SpoVK (COG0464)

Seq: JAAHFP010000077.1 Symploca sp. SIO1C2 1C2_NODE_77, whole genome shotgun sequence (25019 bp)
Overview 1 RT 1: 15722-22693 bp Neighborhood of RT #1 [15722, 22779] COG5635 fliH fliH RVT_N RVT-GII GIIM McrA YjbI CHAT Feature: gene Location: 15722-17776 bp Feature: domain Description: COG5635 Location: 16082-16454 bp Feature: domain Description: COG56 35 Location: 16 082-16 454 bp Feature: domain Description: fliH Location: 17084-17237 bp Feature: domain Description: fliH Location: 17084-17237 bp Feature: domain Description: fliH Location: 17405-17552 bp Feature: domain Description: fliH Location: 17405-17552 bp Feature: gene Location: 17902-18426 bp Feature: gene Location: 18882-20543 bp Feature: domain Description: RVT_N Location: 18918-19164 bp Feature: domain Description: RVT_N Location: 18918-1916 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19209-19818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19209-19818 bp Feature: domain Description: GIIM Note: maturase Location: 19917-20148 bp Feature: domain Description: GIIM Note: maturase Location: 19917-20148 bp Feature: domain Description: McrA Location: 20232-20502 bp Feature: domain Description: McrA Location: 20232-20502 bp Feature: gene Location: 21123-22019 bp Feature: domain Description: YjbI Location: 21489-21984 bp Feature: domain Description: YjbI Location: 21489-21984 bp Feature: gene Location: 22030-22779 bp Feature: domain Description: CHAT Location: 22198-22693 bp Feature: domain Description: CHAT Location: 22198-226 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), fliH (PRK13386), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YjbI (COG2346), CHAT (pfam12770)