myRT

myRT report for GCA_010672945.1_ASM1067294v1

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Seq: JAAHFO010000109.1 Symploca sp. SIO1B1 1B1_NODE_109, whole genome shotgun sequence (19912 bp)
Overview 1 RT 1: 11544-17384 bp Neighborhood of RT #1 [11544, 17384] RVT_N RVT-GII GIIM McrA YjbI YjbI Feature: gene Location: 11544-11717 bp Feature: gene Location: 11975-12853 bp Feature: gene Location: 13036-14697 bp Feature: domain Description: RVT_N Location: 13072-13318 bp Feature: domain Description: RVT_N Location: 1 3072-1 331 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13363-13972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3363-1 3972 bp Feature: domain Description: GIIM Note: maturase Location: 14071-14302 bp Feature: domain Description: GIIM Note: maturase Location: 1 4071 -1 4302 bp Feature: domain Description: McrA Location: 14386-14656 bp Feature: domain Description: McrA Location: 1 4386-1 4656 bp Feature: gene Location: 15277-16896 bp Feature: domain Description: YjbI Location: 15562-15697 bp Feature: domain Description: YjbI Location: 1 5562-1 5697 bp Feature: domain Description: YjbI Location: 16321-16846 bp Feature: domain Description: YjbI Location: 1 6321 -1 6846 bp Feature: gene Location: 17205-17384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YjbI (COG2346)

Seq: JAAHFO010001190.1 Symploca sp. SIO1B1 1B1_NODE_1190, whole genome shotgun sequence (1468 bp)
Overview 1 RT 1: 14-1358 bp Neighborhood of RT #1 [14, 1465] RVT-GII GIIM McrA Feature: gene Location: 14-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-668 bp Feature: domain Description: GIIM Note: maturase Location: 767-998 bp Feature: domain Description: GIIM Note: maturase Location: 767-998 bp Feature: domain Description: McrA Location: 1091-1358 bp Feature: domain Description: McrA Location: 1091-1358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHFO010001336.1 Symploca sp. SIO1B1 1B1_NODE_1336, whole genome shotgun sequence (1211 bp)
Overview 1 RT 1: 157-1008 bp Neighborhood of RT #1 [157, 1208] RVT-UG4 Feature: gene Location: 157-498 bp Feature: gene Location: 630-1208 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 633-1008 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 63 3 -1008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHFO010000022.1 Symploca sp. SIO1B1 1B1_NODE_22, whole genome shotgun sequence (235813 bp)
Overview 1 RT 1: 234310-235664 bp Neighborhood of RT #1 [234310, 235810] glmU HNHc RVT_N RVT-GII Feature: gene Location: 234310-234765 bp Feature: domain Description: glmU Location: 234313-234757 bp Feature: domain Description: glmU Location: 234 313-234 757 bp Feature: gene Location: 234876-235106 bp Feature: domain Description: HNHc Note: nucleases Location: 234921-235032 bp Feature: domain Description: HNHc Note: nucleases Location: 234 921-235032 bp Feature: gene Location: 235187-235810 bp Feature: domain Description: RVT_N Location: 235217-235382 bp Feature: domain Description: RVT_N Location: 235217-235382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235424-235664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2354 24 -235664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glmU (TIGR01173), HNHc (smart00507), RVT_N (pfam13655), RVT-GII

Seq: JAAHFO010000225.1 Symploca sp. SIO1B1 1B1_NODE_225, whole genome shotgun sequence (11760 bp)
Overview 1 RT 1: 1577-7243 bp Neighborhood of RT #1 [1577, 7311] XisI XisH RVT-GII GIIM Phytase-like TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 Feature: gene Location: 1577-1912 bp Feature: domain Description: XisI Location: 1580-1904 bp Feature: domain Description: XisI Location: 15 80-1904 bp Feature: gene Location: 1882-2316 bp Feature: domain Description: XisH Location: 1885-2281 bp Feature: domain Description: XisH Location: 1885 -2281 bp Feature: gene Location: 2448-2963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2451-2700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245 1-2700 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2916 bp Feature: domain Description: GIIM Note: maturase Location: 2775 -2916 bp Feature: gene Location: 3965-5155 bp Feature: domain Description: Phytase-like Location: 4145-5099 bp Feature: domain Description: Phytase-like Location: 4145 -5 099 bp Feature: gene Location: 5371-7311 bp Feature: domain Description: TPR_12 Location: 5581-5722 bp Feature: domain Description: TPR_12 Location: 5 5 81-5 722 bp Feature: domain Description: TPR_12 Location: 5818-6016 bp Feature: domain Description: TPR_12 Location: 5 818-6016 bp Feature: domain Description: TPR_12 Location: 6292-6508 bp Feature: domain Description: TPR_12 Location: 6292-65 08 bp Feature: domain Description: TPR_12 Location: 6919-7111 bp Feature: domain Description: TPR_12 Location: 6919-7111 bp Feature: domain Description: TPR_12 Location: 7135-7243 bp Feature: domain Description: TPR_12 Location: 7135 -7243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XisI (pfam08869), XisH (pfam08814), RVT-GII, GIIM (pfam08388), Phytase-like (pfam13449), TPR_12 (pfam13424)

Seq: JAAHFO010000262.1 Symploca sp. SIO1B1 1B1_NODE_262, whole genome shotgun sequence (10525 bp)
Overview 1 RT 1: 6118-9897 bp Neighborhood of RT #1 [6118, 9897] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 6118-6627 bp Feature: gene Location: 6927-7094 bp Feature: gene Location: 7233-8738 bp Feature: domain Description: RVT_N Location: 7269-7515 bp Feature: domain Description: RVT_N Location: 726 9-7515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7566-7992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756 6 -7992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7992-8160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7992-816 0 bp Feature: domain Description: McrA Location: 8400-8715 bp Feature: domain Description: McrA Location: 8400-8715 bp Feature: gene Location: 9290-9499 bp Feature: gene Location: 9655-9897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHFO010000033.1 Symploca sp. SIO1B1 1B1_NODE_33, whole genome shotgun sequence (47115 bp)
Overview 1 RT 1: 1791-7583 bp Neighborhood of RT #1 [1791, 7588] D RVT-DGRs Avd_like YfmG Feature: gene Location: 1791-2807 bp Feature: domain Description: D Location: 1806-2763 bp Feature: domain Description: D Location: 1806-27 63 bp Feature: gene Location: 3252-3680 bp Feature: gene Location: 4135-5193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4339-4987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4339-4987 bp Feature: gene Location: 5253-5612 bp Feature: domain Description: Avd_like Location: 5271-5577 bp Feature: domain Description: Avd_like Location: 527 1-557 7 bp Feature: gene Location: 5717-7588 bp Feature: domain Description: YfmG Location: 6968-7583 bp Feature: domain Description: YfmG Location: 6968-7 583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: JAAHFO010000038.1 Symploca sp. SIO1B1 1B1_NODE_38, whole genome shotgun sequence (39811 bp)
Overview 1 RT 1: 8513-13818 bp Neighborhood of RT #1 [8513, 13832] KefB YggE RVT_N RVT-GII GIIM McrA PRK07459 Feature: gene Location: 8513-10006 bp Feature: domain Description: KefB Location: 8657-9911 bp Feature: domain Description: KefB Location: 8 657-9911 bp Feature: gene Location: 10193-10933 bp Feature: domain Description: YggE Location: 10253-10931 bp Feature: domain Description: YggE Location: 10253-10931 bp Feature: gene Location: 11206-12972 bp Feature: domain Description: RVT_N Location: 11248-11494 bp Feature: domain Description: RVT_N Location: 11248 -11494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11536-12211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11536-12211 bp Feature: domain Description: GIIM Note: maturase Location: 12286-12511 bp Feature: domain Description: GIIM Note: maturase Location: 1228 6-12511 bp Feature: domain Description: McrA Location: 12601-12889 bp Feature: domain Description: McrA Location: 12601-128 8 9 bp Feature: gene Location: 13003-13170 bp Feature: gene Location: 13545-13832 bp Feature: domain Description: PRK07459 Location: 13677-13818 bp Feature: domain Description: PRK07459 Location: 13677-138 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KefB (COG0475), YggE (COG2968), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK07459 (single-stranded DNA-binding protein; Provisional)

Seq: JAAHFO010000646.1 Symploca sp. SIO1B1 1B1_NODE_646, whole genome shotgun sequence (3715 bp)
Overview 1 RT 1: 379-3666 bp Neighborhood of RT #1 [379, 3713] RVT-UG4 SpoVK Feature: gene Location: 379-1182 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 544-901 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 544-9 01 bp Feature: gene Location: 1356-1838 bp Feature: gene Location: 1968-3713 bp Feature: domain Description: SpoVK Location: 2967-3666 bp Feature: domain Description: SpoVK Location: 29 67-3666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, SpoVK (COG0464)

Seq: JAAHFO010000948.1 Symploca sp. SIO1B1 1B1_NODE_948, whole genome shotgun sequence (2153 bp)
Overview 1 RT 1: 43-1765 bp Neighborhood of RT #1 [43, 1765] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 43-1599 bp Feature: domain Description: RVT_N Location: 79-322 bp Feature: domain Description: RVT_N Location: 79-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802-970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802-970 bp Feature: domain Description: McrA Location: 1201-1546 bp Feature: domain Description: McrA Location: 1201-1546 bp Feature: gene Location: 1598-1765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHFO010000962.1 Symploca sp. SIO1B1 1B1_NODE_962, whole genome shotgun sequence (2121 bp)
Overview 1 RT 1: 452-2021 bp Neighborhood of RT #1 [452, 2098] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 452-2098 bp Feature: domain Description: RVT_N Location: 566-812 bp Feature: domain Description: RVT_N Location: 566-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289-1457 bp Feature: domain Description: McrA Location: 1688-2021 bp Feature: domain Description: McrA Location: 1688-2021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAHFO010000987.1 Symploca sp. SIO1B1 1B1_NODE_987, whole genome shotgun sequence (2044 bp)
Overview 1 RT 1: 95-1943 bp Neighborhood of RT #1 [95, 2041] RVT-UG4 RVT-UG4 SpoVK Feature: gene Location: 95-313 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 149-293 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 149-293 bp Feature: gene Location: 383-838 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 386-608 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 386-608 bp Feature: gene Location: 1071-1562 bp Feature: gene Location: 1646-2041 bp Feature: domain Description: SpoVK Location: 1682-1943 bp Feature: domain Description: SpoVK Location: 1682-1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, SpoVK (COG0464)