myRT

myRT report for GCA_010692425.1_ASM1069242v1

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Seq: JAAHHJ010000013.1 Symploca sp. SIO3C6 3C6_NODE_13, whole genome shotgun sequence (22648 bp)
Overview 1 RT 1: 7045-11149 bp Neighborhood of RT #1 [7045, 11673] RVT_N RVT-GII GIIM HNHc PPC Feature: gene Location: 7045-7887 bp Feature: gene Location: 7913-8071 bp Feature: gene Location: 8082-9896 bp Feature: domain Description: RVT_N Location: 8121-8367 bp Feature: domain Description: RVT_N Location: 81 21 -8367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8409-9051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8409-9051 bp Feature: domain Description: GIIM Note: maturase Location: 9150-9384 bp Feature: domain Description: GIIM Note: maturase Location: 91 50-9384 bp Feature: domain Description: HNHc Note: nucleases Location: 9576-9738 bp Feature: domain Description: HNHc Note: nucleases Location: 9576-9738 bp Feature: gene Location: 10499-10633 bp Feature: gene Location: 10843-11673 bp Feature: domain Description: PPC Location: 10930-11149 bp Feature: domain Description: PPC Location: 1 0930-1 1 1 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PPC (pfam04151)

Seq: JAAHHJ010000137.1 Symploca sp. SIO3C6 3C6_NODE_137, whole genome shotgun sequence (2903 bp)
Overview 1 RT 1: 262-2862 bp Neighborhood of RT #1 [262, 2900] AAA_35 HTH_26 GrpE RVT-GII Feature: gene Location: 262-1305 bp Feature: domain Description: AAA_35 Location: 271-1009 bp Feature: domain Description: AAA_35 Location: 2 71-1009 bp Feature: gene Location: 1484-2473 bp Feature: domain Description: HTH_26 Location: 1532-1706 bp Feature: domain Description: HTH_2 6 Location: 1532 -1706 bp Feature: domain Description: GrpE Location: 2102-2453 bp Feature: domain Description: GrpE Location: 2 102 -2 453 bp Feature: gene Location: 2730-2900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2736-2862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 736-2 862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_35 (pfam14516), HTH_26 (pfam13443), GrpE (pfam01025), RVT-GII

Seq: JAAHHJ010000146.1 Symploca sp. SIO3C6 3C6_NODE_146, whole genome shotgun sequence (2114 bp)
Overview 1 RT 1: 108-1734 bp Neighborhood of RT #1 [108, 1808] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 108-1808 bp Feature: domain Description: RVT_N Location: 153-399 bp Feature: domain Description: RVT_N Location: 153 -3 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1092 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1404 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -1404 bp Feature: domain Description: HNHc Note: nucleases Location: 1578-1734 bp Feature: domain Description: HNHc Note: nucleases Location: 1578-173 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHHJ010000148.1 Symploca sp. SIO3C6 3C6_NODE_148, whole genome shotgun sequence (2025 bp)
Overview 1 RT 1: 319-2024 bp Neighborhood of RT #1 [319, 2024] RVT_N RVT-GII GIIM Feature: gene Location: 319-477 bp Feature: gene Location: 586-1848 bp Feature: domain Description: RVT_N Location: 619-865 bp Feature: domain Description: RVT_N Location: 619-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907-1576 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1807 bp Feature: domain Description: GIIM Note: maturase Location: 1675-1807 bp Feature: gene Location: 1872-2024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAHHJ010000020.1 Symploca sp. SIO3C6 3C6_NODE_20, whole genome shotgun sequence (130185 bp)
Overview 1 RT 1: 126223-130087 bp Neighborhood of RT #1 [126223, 130087] MoxR RVT_N RVT-GII GIIM McrA Feature: gene Location: 126223-127341 bp Feature: domain Description: MoxR Location: 126427-127336 bp Feature: domain Description: MoxR Location: 126427-127336 bp Feature: gene Location: 127286-127579 bp Feature: gene Location: 127579-129372 bp Feature: domain Description: RVT_N Location: 127591-127834 bp Feature: domain Description: RVT_N Location: 1275 91-127834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127879-128575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127879-1285 75 bp Feature: domain Description: GIIM Note: maturase Location: 128674-128905 bp Feature: domain Description: GIIM Note: maturase Location: 128674-128905 bp Feature: domain Description: McrA Location: 128995-129268 bp Feature: domain Description: McrA Location: 128995 -129268 bp Feature: gene Location: 129577-129795 bp Feature: gene Location: 129854-130087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHJ010000048.1 Symploca sp. SIO3C6 3C6_NODE_48, whole genome shotgun sequence (38585 bp)
Overview 1 RT 1: 13786-17953 bp Neighborhood of RT #1 [13786, 17967] RNRR2 RVT_N RVT-GII GIIM HNHc NrdF Feature: gene Location: 13786-13926 bp Feature: gene Location: 14240-14515 bp Feature: domain Description: RNRR2 Location: 14246-14495 bp Feature: domain Description: RNRR2 Location: 14246 -14495 bp Feature: gene Location: 15153-17027 bp Feature: domain Description: RVT_N Location: 15219-15465 bp Feature: domain Description: RVT_N Location: 15219-1546 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15507-16227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15507-16 227 bp Feature: domain Description: GIIM Note: maturase Location: 16326-16560 bp Feature: domain Description: GIIM Note: maturase Location: 16 326 -16 56 0 bp Feature: domain Description: HNHc Note: nucleases Location: 16752-16902 bp Feature: domain Description: HNHc Note: nucleases Location: 16 752-16 902 bp Feature: gene Location: 17140-17466 bp Feature: gene Location: 17536-17967 bp Feature: domain Description: NrdF Location: 17542-17953 bp Feature: domain Description: NrdF Location: 17542-17953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNRR2 (cd01049), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), NrdF (COG0208)

Seq: JAAHHJ010000006.1 Symploca sp. SIO3C6 3C6_NODE_6, whole genome shotgun sequence (307431 bp)
Overview 1 RT 1: 10781-15929 bp 2 RT 2: 299798-307328 bp Neighborhood of RT #1 [10781, 15929] Peptidase_M15 PG_binding_1 PurM RVT_N RVT-GII GIIM Neighborhood of RT #2 [299798, 307429] RVT_N RVT-GII GIIM HNHc McrA RVT-GII GIIM HNH InsQ RVT_N RVT-GII Feature: gene Location: 10781-11824 bp Feature: domain Description: Peptidase_M15 Location: 11177-11513 bp Feature: domain Description: Peptidase_M15 Location: 1117 7 -11513 bp Feature: domain Description: PG_binding_1 Location: 11651-11816 bp Feature: domain Description: PG_binding_1 Location: 11651-11816 bp Feature: gene Location: 13252-14046 bp Feature: domain Description: PurM Location: 13255-14029 bp Feature: domain Description: PurM Location: 13255-14029 bp Feature: gene Location: 14220-15164 bp Feature: domain Description: RVT_N Location: 14256-14430 bp Feature: domain Description: RVT_N Location: 14256-14430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14583-14679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14583-1467 9 bp Feature: domain Description: GIIM Note: maturase Location: 14853-15084 bp Feature: domain Description: GIIM Note: maturase Location: 14853-15084 bp Feature: gene Location: 15411-15560 bp Feature: gene Location: 15801-15929 bp Feature: gene Location: 299798-300430 bp Feature: gene Location: 300569-300892 bp Feature: gene Location: 300960-302798 bp Feature: domain Description: RVT_N Location: 301020-301266 bp Feature: domain Description: RVT_N Location: 301020-301266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301308-301995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301308-301995 bp Feature: domain Description: GIIM Note: maturase Location: 302115-302343 bp Feature: domain Description: GIIM Note: maturase Location: 302115-302343 bp Feature: domain Description: HNHc Note: nucleases Location: 302541-302703 bp Feature: domain Description: HNHc Note: nucleases Location: 302541-3027 03 bp Feature: gene Location: 303296-303820 bp Feature: domain Description: McrA Location: 303431-303713 bp Feature: domain Description: McrA Location: 303431-3037 13 bp Feature: gene Location: 304094-305140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304097-304367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304097 -304367 bp Feature: domain Description: GIIM Note: maturase Location: 304454-304679 bp Feature: domain Description: GIIM Note: maturase Location: 304454-30467 9 bp Feature: domain Description: HNH Note: nucleases Location: 304904-305036 bp Feature: domain Description: HNH Note: nucleases Location: 304904-305036 bp Feature: gene Location: 305465-305674 bp Feature: gene Location: 305824-306423 bp Feature: domain Description: InsQ Location: 305896-306406 bp Feature: domain Description: InsQ Location: 305896-306406 bp Feature: gene Location: 306383-307429 bp Feature: domain Description: RVT_N Location: 306422-306668 bp Feature: domain Description: RVT_N Location: 306422-306668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306710-307328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3067 10-307 328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M15 (pfam01427), PG_binding_1 (pfam01471), PurM (COG0150), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), McrA (COG4058), HNH (pfam01844), InsQ (COG0675)

Seq: JAAHHJ010000074.1 Symploca sp. SIO3C6 3C6_NODE_74, whole genome shotgun sequence (19126 bp)
Overview 1 RT 1: 10530-17484 bp Neighborhood of RT #1 [10530, 17489] RVT-UNC metH Feature: gene Location: 10530-10967 bp Feature: gene Location: 11288-12352 bp Feature: gene Location: 12827-13102 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 12836-12974 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 128 36-12974 bp Feature: gene Location: 13149-13622 bp Feature: gene Location: 13848-17489 bp Feature: domain Description: metH Location: 13917-17484 bp Feature: domain Description: metH Location: 13917-1748 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4/RVT-DGRs/RVT-GII/RVT-UG18(RVT-UNC), metH (TIGR02082)

Seq: JAAHHJ010000082.1 Symploca sp. SIO3C6 3C6_NODE_82, whole genome shotgun sequence (15009 bp)
Overview 1 RT 1: 78-6624 bp Neighborhood of RT #1 [78, 6641] InsQ RVT_N RVT-GII YkfC McrA OrfB_Zn_ribbon RVT_N RVT-GII HsdM Feature: gene Location: 78-479 bp Feature: domain Description: InsQ Location: 126-462 bp Feature: domain Description: InsQ Location: 126-462 bp Feature: gene Location: 1179-3014 bp Feature: domain Description: RVT_N Location: 1212-1455 bp Feature: domain Description: RVT_N Location: 1212-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500-2199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500-219 9 bp Feature: domain Description: YkfC Location: 2436-2553 bp Feature: domain Description: YkfC Location: 2436-2553 bp Feature: domain Description: McrA Location: 2637-2892 bp Feature: domain Description: McrA Location: 2637-289 2 bp Feature: gene Location: 3174-4586 bp Feature: domain Description: OrfB_Zn_ribbon Location: 3180-3333 bp Feature: domain Description: OrfB_Zn_ribbon Location: 3180-3333 bp Feature: domain Description: RVT_N Location: 3375-3621 bp Feature: domain Description: RVT_N Location: 3375-3621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663-4359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663-4359 bp Feature: gene Location: 4744-4938 bp Feature: gene Location: 5163-6641 bp Feature: domain Description: HsdM Location: 5178-6624 bp Feature: domain Description: HsdM Location: 5178-6624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058), OrfB_Zn_ribbon (pfam07282), HsdM (COG0286)