myRT

myRT report for GCA_010692435.1_ASM1069243v1

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Seq: JAAHHR010000105.1 Okeania sp. SIO3H1 3H1_NODE_105, whole genome shotgun sequence (18226 bp)
Overview 1 RT 1: 1962-7077 bp Neighborhood of RT #1 [1962, 7112] TPR TPR BaeS RVT_N RVT-GII mazG Feature: gene Location: 1962-2858 bp Feature: domain Description: TPR Location: 2130-2391 bp Feature: domain Description: TPR Location: 21 30-2391 bp Feature: domain Description: TPR Location: 2415-2694 bp Feature: domain Description: TPR Location: 241 5-2694 bp Feature: gene Location: 3395-4729 bp Feature: domain Description: BaeS Location: 3722-4724 bp Feature: domain Description: BaeS Location: 3722-4724 bp Feature: gene Location: 5368-5697 bp Feature: domain Description: RVT_N Location: 5392-5533 bp Feature: domain Description: RVT_N Location: 5392-5533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581-5638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581 -5638 bp Feature: gene Location: 5948-6088 bp Feature: gene Location: 6294-7112 bp Feature: domain Description: mazG Location: 6306-7077 bp Feature: domain Description: mazG Location: 6306-7077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), BaeS (COG0642), RVT_N (pfam13655), RVT-GII, mazG (TIGR00444)

Seq: JAAHHR010000124.1 Okeania sp. SIO3H1 3H1_NODE_124, whole genome shotgun sequence (16879 bp)
Overview 1 RT 1: 5697-16592 bp Neighborhood of RT #1 [5697, 16592] Ycf66_N RVT_N RVT-GII GIIM McrA RVT_N RVT-GII GIIM HNH RVT_N RVT-GII GIIM dam Feature: gene Location: 5697-5888 bp Feature: gene Location: 6301-7449 bp Feature: domain Description: Ycf66_N Location: 6334-6556 bp Feature: domain Description: Ycf66_N Location: 6334-6556 bp Feature: gene Location: 8569-10434 bp Feature: domain Description: RVT_N Location: 8686-8929 bp Feature: domain Description: RVT_N Location: 8686-892 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8977-9667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8977-9667 bp Feature: domain Description: GIIM Note: maturase Location: 9739-9973 bp Feature: domain Description: GIIM Note: maturase Location: 9739-9973 bp Feature: domain Description: McrA Location: 10045-10366 bp Feature: domain Description: McrA Location: 10045-10366 bp Feature: gene Location: 11206-11343 bp Feature: gene Location: 11822-13471 bp Feature: domain Description: RVT_N Location: 11879-12122 bp Feature: domain Description: RVT_N Location: 11879-12 12 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12164-12779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 164-12 779 bp Feature: domain Description: GIIM Note: maturase Location: 12836-13064 bp Feature: domain Description: GIIM Note: maturase Location: 12 836-13064 bp Feature: domain Description: HNH Note: nucleases Location: 13316-13451 bp Feature: domain Description: HNH Note: nucleases Location: 13316-13451 bp Feature: gene Location: 13576-14979 bp Feature: domain Description: RVT_N Location: 13618-13846 bp Feature: domain Description: RVT_N Location: 13618-13846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13882-14563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13882 -14563 bp Feature: domain Description: GIIM Note: maturase Location: 14662-14896 bp Feature: domain Description: GIIM Note: maturase Location: 14662 -14896 bp Feature: gene Location: 15419-16204 bp Feature: domain Description: dam Location: 15452-16193 bp Feature: domain Description: dam Location: 15452 -16193 bp Feature: gene Location: 16404-16592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ycf66_N (pfam07444), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HNH (pfam01844), dam (TIGR00571)

Seq: JAAHHR010000014.1 Okeania sp. SIO3H1 3H1_NODE_14, whole genome shotgun sequence (12946 bp)
Overview 1 RT 1: 4303-12712 bp Neighborhood of RT #1 [4303, 12732] lyz_endolysin_autolysin spore_SleB RVT_N RVT-GII RVT-GII GIIM NB-ARC PLN02433 Feature: gene Location: 4303-4569 bp Feature: gene Location: 4648-5433 bp Feature: domain Description: lyz_endolysin_autolysin Location: 4651-4789 bp Feature: domain Description: lyz_endolysin_autolysin Location: 4651-4789 bp Feature: domain Description: spore_SleB Location: 5098-5296 bp Feature: domain Description: spore_SleB Location: 5098-5296 bp Feature: gene Location: 5747-6652 bp Feature: domain Description: RVT_N Location: 5864-6110 bp Feature: domain Description: RVT_N Location: 5864-6110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155-6470 bp Feature: gene Location: 6881-7159 bp Feature: gene Location: 7883-8023 bp Feature: gene Location: 8528-9061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8534-8645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853 4-8645 bp Feature: domain Description: GIIM Note: maturase Location: 8702-8930 bp Feature: domain Description: GIIM Note: maturase Location: 8702-893 0 bp Feature: gene Location: 8916-10454 bp Feature: domain Description: NB-ARC Location: 9555-9813 bp Feature: domain Description: NB-ARC Location: 9555-9813 bp Feature: gene Location: 11668-12732 bp Feature: domain Description: PLN02433 Location: 11698-12712 bp Feature: domain Description: PLN0243 3 Location: 11698-12712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_endolysin_autolysin (cd00737), spore_SleB (TIGR02869), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NB-ARC (pfam00931), PLN02433 (uroporphyrinogen decarboxylase)

Seq: JAAHHR010000152.1 Okeania sp. SIO3H1 3H1_NODE_152, whole genome shotgun sequence (15146 bp)
Overview 1 RT 1: 7675-14296 bp Neighborhood of RT #1 [7675, 14301] KOG4178 RVT_N RVT-GII RVT-GII GIIM McrA recA WecE Feature: gene Location: 7675-8553 bp Feature: domain Description: KOG4178 Location: 7693-8548 bp Feature: domain Description: KOG4 178 Location: 7693-854 8 bp Feature: gene Location: 8798-8938 bp Feature: gene Location: 9182-10738 bp Feature: domain Description: RVT_N Location: 9212-9449 bp Feature: domain Description: RVT_N Location: 9212-94 4 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9509-9929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9509-9929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9935-10160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9935-10160 bp Feature: domain Description: GIIM Note: maturase Location: 10220-10367 bp Feature: domain Description: GIIM Note: maturase Location: 10220-10367 bp Feature: domain Description: McrA Location: 10475-10718 bp Feature: domain Description: McrA Location: 104 75-10718 bp Feature: gene Location: 11253-12335 bp Feature: domain Description: recA Location: 11271-12273 bp Feature: domain Description: recA Location: 11271-12273 bp Feature: gene Location: 13171-14301 bp Feature: domain Description: WecE Location: 13192-14296 bp Feature: domain Description: WecE Location: 13192-14 296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4178 (KOG4178, Soluble epoxide hydrolase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), recA (PRK09519), WecE (COG0399)

Seq: JAAHHR010000182.1 Okeania sp. SIO3H1 3H1_NODE_182, whole genome shotgun sequence (13722 bp)
Overview 1 RT 1: 4080-8631 bp Neighborhood of RT #1 [4080, 8631] COG2324 RVT_N RVT-GII GIIM McrA Caroten_synth Feature: gene Location: 4080-4262 bp Feature: gene Location: 4474-4989 bp Feature: domain Description: COG2324 Location: 4627-4972 bp Feature: domain Description: COG2324 Location: 4627-4972 bp Feature: gene Location: 5567-7450 bp Feature: domain Description: RVT_N Location: 5684-5927 bp Feature: domain Description: RVT_N Location: 5 684-5 927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5975-6668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 975 -6668 bp Feature: domain Description: GIIM Note: maturase Location: 6740-6974 bp Feature: domain Description: GIIM Note: maturase Location: 6740-6974 bp Feature: domain Description: McrA Location: 7043-7328 bp Feature: domain Description: McrA Location: 7043-7328 bp Feature: gene Location: 7568-8113 bp Feature: domain Description: Caroten_synth Location: 7571-7985 bp Feature: domain Description: Caroten_synth Location: 75 71-7985 bp Feature: gene Location: 8422-8631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2324 (Uncharacterized membrane protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Caroten_synth (pfam04240)

Seq: JAAHHR010000196.1 Okeania sp. SIO3H1 3H1_NODE_196, whole genome shotgun sequence (12902 bp)
Overview 1 RT 1: 6031-9168 bp Neighborhood of RT #1 [6031, 9179] RVT-UG4 RVT-UG4 DUF4351 PDDEXK_2 Feature: gene Location: 6031-6261 bp Feature: gene Location: 6636-6947 bp Feature: gene Location: 6962-7444 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6974-7151 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6 974-7151 bp Feature: gene Location: 7448-8062 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7802-8060 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7802-806 0 bp Feature: gene Location: 8253-8552 bp Feature: domain Description: DUF4351 Location: 8364-8535 bp Feature: domain Description: DUF4351 Location: 836 4-8535 bp Feature: gene Location: 8619-9179 bp Feature: domain Description: PDDEXK_2 Location: 8637-9168 bp Feature: domain Description: PDDEXK_2 Location: 86 37-916 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF4351 (pfam14261), PDDEXK_2 (pfam12784)

Seq: JAAHHR010000233.1 Okeania sp. SIO3H1 3H1_NODE_233, whole genome shotgun sequence (11089 bp)
Overview 1 RT 1: 4612-8386 bp Neighborhood of RT #1 [4612, 8386] YkfC RVT-GII GIIM Feature: gene Location: 4612-4830 bp Feature: gene Location: 5255-5518 bp Feature: gene Location: 5651-7075 bp Feature: domain Description: YkfC Location: 5705-5879 bp Feature: domain Description: YkfC Location: 57 05-587 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5954-6608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5954-6608 bp Feature: domain Description: GIIM Note: maturase Location: 6686-6920 bp Feature: domain Description: GIIM Note: maturase Location: 6686-6920 bp Feature: gene Location: 7825-8085 bp Feature: gene Location: 8201-8386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHHR010000266.1 Okeania sp. SIO3H1 3H1_NODE_266, whole genome shotgun sequence (10081 bp)
Overview 1 RT 1: 2820-8988 bp Neighborhood of RT #1 [2820, 8988] sigma70-ECF sigma70-ECF InsQ RVT_N RVT-GII GIIM HNH InsQ Feature: gene Location: 2820-3950 bp Feature: domain Description: sigma70-ECF Location: 3225-3666 bp Feature: domain Description: sigma70-ECF Location: 3225-3666 bp Feature: domain Description: sigma70-ECF Location: 3786-3915 bp Feature: domain Description: sigma70-ECF Location: 378 6-3915 bp Feature: gene Location: 4207-4497 bp Feature: domain Description: InsQ Location: 4309-4435 bp Feature: domain Description: InsQ Location: 4309-4435 bp Feature: gene Location: 4497-6323 bp Feature: domain Description: RVT_N Location: 4530-4776 bp Feature: domain Description: RVT_N Location: 4530-4776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4818-5514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48 18 -5514 bp Feature: domain Description: GIIM Note: maturase Location: 5616-5844 bp Feature: domain Description: GIIM Note: maturase Location: 5616-58 44 bp Feature: domain Description: HNH Note: nucleases Location: 6072-6201 bp Feature: domain Description: HNH Note: nucleases Location: 6072-6201 bp Feature: gene Location: 6942-7457 bp Feature: domain Description: InsQ Location: 6951-7413 bp Feature: domain Description: InsQ Location: 6951-7413 bp Feature: gene Location: 8830-8988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sigma70-ECF (TIGR02937), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHHR010000320.1 Okeania sp. SIO3H1 3H1_NODE_320, whole genome shotgun sequence (8820 bp)
Overview 1 RT 1: 3796-8686 bp Neighborhood of RT #1 [3796, 8724] RVT_N RVT-GII GIIM thyX PRK07773 NUMOD4 HNH_3 intein_Cterm thyX Feature: gene Location: 3796-3924 bp Feature: gene Location: 3999-4376 bp Feature: gene Location: 5309-6958 bp Feature: domain Description: RVT_N Location: 5345-5591 bp Feature: domain Description: RVT_N Location: 5345-559 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5633-6329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5633-6329 bp Feature: domain Description: GIIM Note: maturase Location: 6437-6674 bp Feature: domain Description: GIIM Note: maturase Location: 6437-6674 bp Feature: gene Location: 7237-8724 bp Feature: domain Description: thyX Location: 7249-7360 bp Feature: domain Description: thyX Location: 7249 -7360 bp Feature: domain Description: PRK07773 Location: 7510-7717 bp Feature: domain Description: PRK07773 Location: 7510-7717 bp Feature: domain Description: NUMOD4 Location: 7789-7951 bp Feature: domain Description: NUMOD4 Location: 7789 -79 51 bp Feature: domain Description: HNH_3 Location: 7993-8119 bp Feature: domain Description: HNH_3 Location: 79 9 3-8119 bp Feature: domain Description: intein_Cterm Location: 8212-8272 bp Feature: domain Description: intein_Cterm Location: 8212-8272 bp Feature: domain Description: thyX Location: 8272-8686 bp Feature: domain Description: thyX Location: 8272-8686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), thyX (TIGR02170), PRK07773 (replicative DNA helicase; Validated), NUMOD4 (pfam07463), HNH_3 (pfam13392), intein_Cterm (TIGR01443)

Seq: JAAHHR010000406.1 Okeania sp. SIO3H1 3H1_NODE_406, whole genome shotgun sequence (7172 bp)
Overview 1 RT 1: 3580-7171 bp Neighborhood of RT #1 [3580, 7170] PdxJ RVT_N RVT-GII Feature: gene Location: 3580-4299 bp Feature: domain Description: PdxJ Location: 3589-4288 bp Feature: domain Description: PdxJ Location: 3589-4288 bp Feature: gene Location: 5849-6004 bp Feature: gene Location: 6268-7170 bp Feature: domain Description: RVT_N Location: 6319-6562 bp Feature: domain Description: RVT_N Location: 6319-6562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6604-7171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6604-7171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PdxJ (pfam03740), RVT_N (pfam13655), RVT-GII

Seq: JAAHHR010000468.1 Okeania sp. SIO3H1 3H1_NODE_468, whole genome shotgun sequence (6090 bp)
Overview 1 RT 1: 2260-5766 bp Neighborhood of RT #1 [2260, 5766] CYTH RVT_N RVT-GII GIIM McrA CYTH Feature: gene Location: 2260-2397 bp Feature: domain Description: CYTH Location: 2263-2359 bp Feature: domain Description: CYTH Location: 2263-2359 bp Feature: gene Location: 2457-2633 bp Feature: gene Location: 2952-4796 bp Feature: domain Description: RVT_N Location: 3069-3312 bp Feature: domain Description: RVT_N Location: 3069-3312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360-4029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360-4029 bp Feature: domain Description: GIIM Note: maturase Location: 4104-4335 bp Feature: domain Description: GIIM Note: maturase Location: 4104-4335 bp Feature: domain Description: McrA Location: 4335-4704 bp Feature: domain Description: McrA Location: 4335-4704 bp Feature: gene Location: 4946-5248 bp Feature: domain Description: CYTH Location: 4955-5243 bp Feature: domain Description: CYTH Location: 4955-5243 bp Feature: gene Location: 5623-5766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CYTH (pfam01928), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHR010000064.1 Okeania sp. SIO3H1 3H1_NODE_64, whole genome shotgun sequence (22026 bp)
Overview 1 RT 1: 292-5506 bp Neighborhood of RT #1 [292, 5506] TIGR03985 SpoT RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 292-1779 bp Feature: domain Description: TIGR03985 Location: 1003-1762 bp Feature: domain Description: TIGR03985 Location: 1003-1762 bp Feature: gene Location: 2013-2588 bp Feature: domain Description: SpoT Location: 2028-2538 bp Feature: domain Description: SpoT Location: 2028-2538 bp Feature: gene Location: 2679-4811 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2940-3543 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2940-3543 bp Feature: domain Description: Cas1_I-II-III Location: 3801-4776 bp Feature: domain Description: Cas1_I-II-III Location: 3801-4776 bp Feature: gene Location: 4876-5148 bp Feature: domain Description: Cas2_I_II_III Location: 4882-5113 bp Feature: domain Description: Cas2_I_II_III Location: 4882-5113 bp Feature: gene Location: 5276-5506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03985 (CRISPR-associated protein, TIGR03985 family), SpoT (COG0317), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: JAAHHR010000084.1 Okeania sp. SIO3H1 3H1_NODE_84, whole genome shotgun sequence (19983 bp)
Overview 1 RT 1: 7187-12104 bp Neighborhood of RT #1 [7187, 12127] OrfB_IS605 RVT-GII GIIM McrA STKc_PknB_like 7WD40 WD40 WD40 Feature: gene Location: 7187-8149 bp Feature: domain Description: OrfB_IS605 Location: 7733-8042 bp Feature: domain Description: OrfB_IS605 Location: 7733-8042 bp Feature: gene Location: 8322-8546 bp Feature: gene Location: 8791-9681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8797-8926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8797-8926 bp Feature: domain Description: GIIM Note: maturase Location: 8998-9232 bp Feature: domain Description: GIIM Note: maturase Location: 8998-9232 bp Feature: domain Description: McrA Location: 9310-9601 bp Feature: domain Description: McrA Location: 9310-9601 bp Feature: gene Location: 9845-9994 bp Feature: gene Location: 10058-12127 bp Feature: domain Description: STKc_PknB_like Location: 10175-10964 bp Feature: domain Description: STKc_PknB_like Location: 10175-10964 bp Feature: domain Description: 7WD40 Location: 11216-11849 bp Feature: domain Description: 7WD40 Location: 11216-11849 bp Feature: domain Description: WD40 Location: 11879-11981 bp Feature: domain Description: WD40 Location: 11879-11981 bp Feature: domain Description: WD40 Location: 11993-12104 bp Feature: domain Description: WD40 Location: 11993-12104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OrfB_IS605 (pfam01385), RVT-GII, GIIM (pfam08388), McrA (COG4058), STKc_PknB_like (cd14014), 7WD40 (sd00039), WD40 (smart00320)