myRT

myRT report for GCA_010692575.1_ASM1069257v1

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Seq: JAAHGZ010001126.1 Symploca sp. SIO2G7 2G7_NODE_1126, whole genome shotgun sequence (3482 bp)
Overview 1 RT 1: 573-3297 bp Neighborhood of RT #1 [573, 3338] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 573-842 bp Feature: gene Location: 970-1245 bp Feature: domain Description: Cas2_I_II_III Location: 979-1201 bp Feature: domain Description: Cas2_I_II_III Location: 979-1 201 bp Feature: gene Location: 1245-3338 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1455-2070 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 455-2070 bp Feature: domain Description: Cas1_I-II-III Location: 2343-3297 bp Feature: domain Description: Cas1 _I-II-III Location: 2343-3297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JAAHGZ010001345.1 Symploca sp. SIO2G7 2G7_NODE_1345, whole genome shotgun sequence (3002 bp)
Overview 1 RT 1: 3-2994 bp Neighborhood of RT #1 [3, 2999] InsQ RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 3-311 bp Feature: domain Description: InsQ Location: 12-255 bp Feature: domain Description: InsQ Location: 12 -2 55 bp Feature: gene Location: 978-2801 bp Feature: domain Description: RVT_N Location: 1062-1305 bp Feature: domain Description: RVT_N Location: 1062 -1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350-2049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350-2 049 bp Feature: domain Description: GIIM Note: maturase Location: 2154-2385 bp Feature: domain Description: GIIM Note: maturase Location: 2 154-2 385 bp Feature: domain Description: HNHc Note: nucleases Location: 2583-2748 bp Feature: domain Description: HNHc Note: nucleases Location: 2 583-2 748 bp Feature: gene Location: 2856-2999 bp Feature: domain Description: InsQ Location: 2880-2994 bp Feature: domain Description: InsQ Location: 2 880-2 994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGZ010000027.1 Symploca sp. SIO2G7 2G7_NODE_27, whole genome shotgun sequence (31236 bp)
Overview 1 RT 1: 23194-27256 bp Neighborhood of RT #1 [23194, 27891] Cas1_I-II-III RVT-CRISPR 23S_rRNA_IVP_like Cas_csx3 Cas_csx3 Feature: gene Location: 23194-24375 bp Feature: domain Description: Cas1_I-II-III Location: 23383-24337 bp Feature: domain Description: Cas1_I-II-III Location: 23 3 83 -243 3 7 bp Feature: gene Location: 24459-25484 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24717-25320 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24717-253 20 bp Feature: gene Location: 25942-26331 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 25975-26296 bp Feature: domain Description: 23 S_rRNA_IVP_like Location: 25975-26296 bp Feature: gene Location: 26479-27891 bp Feature: domain Description: Cas_csx3 Location: 26629-26782 bp Feature: domain Description: Cas_csx3 Location: 26629-26782 bp Feature: domain Description: Cas_csx3 Location: 27100-27256 bp Feature: domain Description: Cas_csx3 Location: 27100-27256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, 23S_rRNA_IVP_like (cd16377), Cas_csx3 (pfam09620)

Seq: JAAHGZ010000031.1 Symploca sp. SIO2G7 2G7_NODE_31, whole genome shotgun sequence (26765 bp)
Overview 1 RT 1: 10117-16203 bp Neighborhood of RT #1 [10117, 16217] YggE PRK07459 RVT_N RVT-GII GIIM PRK13927 PRK13922 Feature: gene Location: 10117-10860 bp Feature: domain Description: YggE Location: 10183-10858 bp Feature: domain Description: YggE Location: 10183-10858 bp Feature: gene Location: 10873-11052 bp Feature: domain Description: PRK07459 Location: 10879-11035 bp Feature: domain Description: PRK074 59 Location: 10879-11035 bp Feature: gene Location: 11397-12953 bp Feature: domain Description: RVT_N Location: 11430-11676 bp Feature: domain Description: RVT_N Location: 114 30-11676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-12384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-12384 bp Feature: domain Description: GIIM Note: maturase Location: 12486-12723 bp Feature: domain Description: GIIM Note: maturase Location: 124 86-12723 bp Feature: gene Location: 14170-15177 bp Feature: domain Description: PRK13927 Location: 14173-15151 bp Feature: domain Description: PRK13927 Location: 14 173-15151 bp Feature: gene Location: 15483-16217 bp Feature: domain Description: PRK13922 Location: 15648-16203 bp Feature: domain Description: PRK13922 Location: 1564 8-16203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YggE (COG2968), PRK07459 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13927 (rod shape-determining protein MreB; Provisional), PRK13922 (rod shape-determining protein MreC; Provisional)

Seq: JAAHGZ010000357.1 Symploca sp. SIO2G7 2G7_NODE_357, whole genome shotgun sequence (7766 bp)
Overview 1 RT 1: 1363-7764 bp Neighborhood of RT #1 [1363, 7763] COG4683 HTH_XRE RVT_N RVT-GII GIIM HNH RVT-GII GIIM Feature: gene Location: 1363-1719 bp Feature: domain Description: COG4683 Location: 1369-1711 bp Feature: domain Description: COG4683 Location: 1369-1711 bp Feature: gene Location: 1716-2087 bp Feature: domain Description: HTH_XRE Location: 1812-1968 bp Feature: domain Description: HTH_XRE Location: 1812-1968 bp Feature: gene Location: 2237-4021 bp Feature: domain Description: RVT_N Location: 2270-2516 bp Feature: domain Description: RVT_N Location: 2270-25 16 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2558-3236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 5 8-3236 bp Feature: domain Description: GIIM Note: maturase Location: 3335-3566 bp Feature: domain Description: GIIM Note: maturase Location: 3335 -35 66 bp Feature: domain Description: HNH Note: nucleases Location: 3782-3917 bp Feature: domain Description: HNH Note: nucleases Location: 3782-3917 bp Feature: gene Location: 4369-4518 bp Feature: gene Location: 4652-4972 bp Feature: gene Location: 5913-6722 bp Feature: gene Location: 6798-7217 bp Feature: gene Location: 7278-7763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7287-7542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7287-75 42 bp Feature: domain Description: GIIM Note: maturase Location: 7599-7764 bp Feature: domain Description: GIIM Note: maturase Location: 75 99-7764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4683 (Uncharacterized protein ), HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAHGZ010000440.1 Symploca sp. SIO2G7 2G7_NODE_440, whole genome shotgun sequence (6839 bp)
Overview 1 RT 1: 3108-6838 bp Neighborhood of RT #1 [3108, 6838] DUF4351 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3108-3659 bp Feature: gene Location: 3690-4337 bp Feature: domain Description: DUF4351 Location: 4116-4221 bp Feature: domain Description: DUF4351 Location: 4116 -4221 bp Feature: gene Location: 4431-6098 bp Feature: domain Description: RVT_N Location: 4479-4719 bp Feature: domain Description: RVT_N Location: 4479-4719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764-5379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476 4-5379 bp Feature: domain Description: GIIM Note: maturase Location: 5436-5664 bp Feature: domain Description: GIIM Note: maturase Location: 5436 -56 6 4 bp Feature: domain Description: HNHc Note: nucleases Location: 5874-6048 bp Feature: domain Description: HNHc Note: nucleases Location: 5874-6 048 bp Feature: gene Location: 6353-6502 bp Feature: gene Location: 6689-6838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4351 (pfam14261), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGZ010000923.1 Symploca sp. SIO2G7 2G7_NODE_923, whole genome shotgun sequence (4077 bp)
Overview 1 RT 1: 1493-4020 bp Neighborhood of RT #1 [1493, 4020] RVT-UG4 Feature: gene Location: 1493-2176 bp Feature: gene Location: 2175-2357 bp Feature: gene Location: 2538-2828 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2544-2622 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2544-2622 bp Feature: gene Location: 3011-3409 bp Feature: gene Location: 3634-4020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHGZ010000988.1 Symploca sp. SIO2G7 2G7_NODE_988, whole genome shotgun sequence (3821 bp)
Overview 1 RT 1: 1-2942 bp Neighborhood of RT #1 [1, 2942] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-156 bp Feature: gene Location: 710-2434 bp Feature: domain Description: RVT_N Location: 758-998 bp Feature: domain Description: RVT_N Location: 758 -998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1691 bp Feature: domain Description: GIIM Note: maturase Location: 1766-1997 bp Feature: domain Description: GIIM Note: maturase Location: 1766-1997 bp Feature: domain Description: HNHc Note: nucleases Location: 2216-2360 bp Feature: domain Description: HNHc Note: nucleases Location: 2216-2360 bp Feature: gene Location: 2487-2942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)