myRT

myRT report for GCA_010692585.1_ASM1069258v1

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Seq: JAAHHA010001001.1 Okeania sp. SIO2H7 2H7_NODE_1001, whole genome shotgun sequence (2882 bp)
Overview 1 RT 1: 938-2207 bp Neighborhood of RT #1 [938, 2380] YkfC RVT-GII GIIM Feature: gene Location: 938-2380 bp Feature: domain Description: YkfC Location: 992-1166 bp Feature: domain Description: YkfC Location: 992-1 1 66 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1241-1895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 -1 895 bp Feature: domain Description: GIIM Note: maturase Location: 1973-2207 bp Feature: domain Description: GIIM Note: maturase Location: 1 973-2207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHHA010001577.1 Okeania sp. SIO2H7 2H7_NODE_1577, whole genome shotgun sequence (2244 bp)
Overview 1 RT 1: 24-2073 bp Neighborhood of RT #1 [24, 2073] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 24-1592 bp Feature: domain Description: RVT_N Location: 48-294 bp Feature: domain Description: RVT_N Location: 48-2 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 -762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-936 bp Feature: domain Description: GIIM Note: maturase Location: 993-1113 bp Feature: domain Description: GIIM Note: maturase Location: 993-1113 bp Feature: domain Description: McrA Location: 1197-1515 bp Feature: domain Description: McrA Location: 1197-1515 bp Feature: gene Location: 1936-2073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHHA010001785.1 Okeania sp. SIO2H7 2H7_NODE_1785, whole genome shotgun sequence (2068 bp)
Overview 1 RT 1: 1-1601 bp Neighborhood of RT #1 [1, 1648] RVT-GII COG3503 COG3503 Feature: gene Location: 1-258 bp Feature: gene Location: 556-813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-73 9 bp Feature: gene Location: 1087-1287 bp Feature: domain Description: COG3503 Location: 1090-1216 bp Feature: domain Description: COG3 503 Location: 1090-1216 bp Feature: gene Location: 1325-1648 bp Feature: domain Description: COG3503 Location: 1349-1601 bp Feature: domain Description: COG3 503 Location: 13 49-1601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3503 (Uncharacterized membrane protein )

Seq: JAAHHA010001820.1 Okeania sp. SIO2H7 2H7_NODE_1820, whole genome shotgun sequence (2033 bp)
Overview 1 RT 1: 2-2032 bp Neighborhood of RT #1 [2, 2032] KOG4254 RVT-GII Feature: gene Location: 2-655 bp Feature: domain Description: KOG4254 Location: 5-644 bp Feature: domain Description: KOG4 254 Location: 5-64 4 bp Feature: gene Location: 882-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1200 bp Feature: gene Location: 1682-2032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4254 (KOG4254, Phytoene desaturase ), RVT-GII

Seq: JAAHHA010001884.1 Okeania sp. SIO2H7 2H7_NODE_1884, whole genome shotgun sequence (1975 bp)
Overview 1 RT 1: 113-1793 bp Neighborhood of RT #1 [113, 1793] RVT_N RVT-GII Feature: gene Location: 113-1288 bp Feature: domain Description: RVT_N Location: 281-524 bp Feature: domain Description: RVT_N Location: 281-5 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 72-1265 bp Feature: gene Location: 1515-1793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHHA010000286.1 Okeania sp. SIO2H7 2H7_NODE_286, whole genome shotgun sequence (4667 bp)
Overview 1 RT 1: 2-2857 bp Neighborhood of RT #1 [2, 2970] RVT-GII GIIM RVT_N RVT-GII HNH RVT_N Feature: gene Location: 2-586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-272 bp Feature: domain Description: GIIM Note: maturase Location: 347-578 bp Feature: domain Description: GIIM Note: maturase Location: 347-578 bp Feature: gene Location: 564-1469 bp Feature: domain Description: RVT_N Location: 732-975 bp Feature: domain Description: RVT_N Location: 732-975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1404 bp Feature: gene Location: 2261-2401 bp Feature: domain Description: HNH Note: nucleases Location: 2267-2360 bp Feature: domain Description: HNH Note: nucleases Location: 226 7-236 0 bp Feature: gene Location: 2575-2970 bp Feature: domain Description: RVT_N Location: 2611-2857 bp Feature: domain Description: RVT_N Location: 26 11-2857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HNH (pfam01844)

Seq: JAAHHA010003034.1 Okeania sp. SIO2H7 2H7_NODE_3034, whole genome shotgun sequence (1362 bp)
Overview 1 RT 1: 355-1289 bp Neighborhood of RT #1 [355, 1303] RVT-GII nusB Feature: gene Location: 355-567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-565 bp Feature: gene Location: 680-1303 bp Feature: domain Description: nusB Location: 692-1289 bp Feature: domain Description: nusB Location: 692-1289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nusB (TIGR01951)

Seq: JAAHHA010000032.1 Okeania sp. SIO2H7 2H7_NODE_32, whole genome shotgun sequence (12106 bp)
Overview 1 RT 1: 3-4489 bp Neighborhood of RT #1 [3, 4506] PRK09201 RVT_N RVT-GII GIIM McrA miaA Feature: gene Location: 3-452 bp Feature: domain Description: PRK09201 Location: 6-396 bp Feature: domain Description: PRK09201 Location: 6-396 bp Feature: gene Location: 567-767 bp Feature: gene Location: 994-2877 bp Feature: domain Description: RVT_N Location: 1111-1354 bp Feature: domain Description: RVT_N Location: 1111-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402-2095 bp Feature: domain Description: GIIM Note: maturase Location: 2167-2401 bp Feature: domain Description: GIIM Note: maturase Location: 2167-2401 bp Feature: domain Description: McrA Location: 2485-2776 bp Feature: domain Description: McrA Location: 248 5-2776 bp Feature: gene Location: 3037-3186 bp Feature: gene Location: 3565-4506 bp Feature: domain Description: miaA Location: 3610-4489 bp Feature: domain Description: miaA Location: 3610-448 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09201 (AtzE family amidohydrolase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), miaA (TIGR00174)

Seq: JAAHHA010003588.1 Okeania sp. SIO2H7 2H7_NODE_3588, whole genome shotgun sequence (1149 bp)
Overview 1 RT 1: 38-1141 bp Neighborhood of RT #1 [38, 1146] RVT_N RVT-GII Feature: gene Location: 38-313 bp Feature: gene Location: 492-638 bp Feature: gene Location: 700-1146 bp Feature: domain Description: RVT_N Location: 703-901 bp Feature: domain Description: RVT_N Location: 703-9 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 49 -1141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHHA010003879.1 Okeania sp. SIO2H7 2H7_NODE_3879, whole genome shotgun sequence (1053 bp)
Overview 1 RT 1: 2-1052 bp Neighborhood of RT #1 [2, 1052] RVT-GII RVT-GII Feature: gene Location: 2-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-263 bp Feature: gene Location: 417-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447-693 bp Feature: gene Location: 867-1052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAHHA010000483.1 Okeania sp. SIO2H7 2H7_NODE_483, whole genome shotgun sequence (3921 bp)
Overview 1 RT 1: 2-3821 bp Neighborhood of RT #1 [2, 3919] RVT-GII GIIM McrA PRK13922 UvrD Feature: gene Location: 2-1051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-311 bp Feature: domain Description: GIIM Note: maturase Location: 410-644 bp Feature: domain Description: GIIM Note: maturase Location: 410-644 bp Feature: domain Description: McrA Location: 731-1016 bp Feature: domain Description: McrA Location: 731-1016 bp Feature: gene Location: 1321-1758 bp Feature: domain Description: PRK13922 Location: 1363-1615 bp Feature: domain Description: PRK13922 Location: 1363-1615 bp Feature: gene Location: 2948-3919 bp Feature: domain Description: UvrD Location: 3059-3821 bp Feature: domain Description: UvrD Location: 3059-3821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK13922 (rod shape-determining protein MreC; Provisional), UvrD (COG0210)

Seq: JAAHHA010000635.1 Okeania sp. SIO2H7 2H7_NODE_635, whole genome shotgun sequence (3502 bp)
Overview 1 RT 1: 160-3275 bp Neighborhood of RT #1 [160, 3275] RVT-UG18 RVT-UG4 Feature: gene Location: 160-366 bp Feature: gene Location: 454-999 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 802-985 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 802-985 bp Feature: gene Location: 1169-1645 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1172-1325 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1172-1325 bp Feature: gene Location: 2445-2810 bp Feature: gene Location: 2985-3275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18, RVT-UG4

Seq: JAAHHA010000790.1 Okeania sp. SIO2H7 2H7_NODE_790, whole genome shotgun sequence (3223 bp)
Overview 1 RT 1: 287-2518 bp Neighborhood of RT #1 [287, 2640] DDE_Tnp_1 DDE_5 RVT_N RVT-GII RVT-GII Feature: gene Location: 287-973 bp Feature: domain Description: DDE_Tnp_1 Location: 293-782 bp Feature: domain Description: DDE_Tnp_1 Location: 293-782 bp Feature: gene Location: 993-1589 bp Feature: domain Description: DDE_5 Location: 1224-1473 bp Feature: domain Description: DDE_5 Location: 1224-1473 bp Feature: gene Location: 1606-2640 bp Feature: domain Description: RVT_N Location: 1630-1876 bp Feature: domain Description: RVT_N Location: 1630-1876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2353-2518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2353-2518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546), RVT_N (pfam13655), RVT-GII

Seq: JAAHHA010000866.1 Okeania sp. SIO2H7 2H7_NODE_866, whole genome shotgun sequence (3110 bp)
Overview 1 RT 1: 1-2898 bp Neighborhood of RT #1 [1, 2990] DUF4351 PDDEXK_2 DUF4351 RVT-UG4 InsQ Feature: gene Location: 1-135 bp Feature: domain Description: DUF4351 Location: 4-121 bp Feature: domain Description: DUF4351 Location: 4-121 bp Feature: gene Location: 150-1070 bp Feature: domain Description: PDDEXK_2 Location: 168-870 bp Feature: domain Description: PDDEXK_2 Location: 168-870 bp Feature: domain Description: DUF4351 Location: 888-1053 bp Feature: domain Description: DUF4351 Location: 888-1053 bp Feature: gene Location: 1269-1721 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1530-1695 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1530-1695 bp Feature: gene Location: 1788-2990 bp Feature: domain Description: InsQ Location: 1791-2898 bp Feature: domain Description: InsQ Location: 1791-2898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4351 (pfam14261), PDDEXK_2 (pfam12784), RVT-UG4, InsQ (COG0675)

Seq: JAAHHA010000093.1 Okeania sp. SIO2H7 2H7_NODE_93, whole genome shotgun sequence (6744 bp)
Overview 1 RT 1: 107-4142 bp Neighborhood of RT #1 [107, 4183] OrfB_Zn_ribbon RVT-GII chaperone_ClpB Feature: gene Location: 107-400 bp Feature: domain Description: OrfB_Zn_ribbon Location: 179-311 bp Feature: domain Description: OrfB_Zn_ribbon Location: 179-311 bp Feature: gene Location: 601-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613-862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613-862 bp Feature: gene Location: 1000-1314 bp Feature: gene Location: 1571-4183 bp Feature: domain Description: chaperone_ClpB Location: 1598-4142 bp Feature: domain Description: chaperone_ClpB Location: 15 98-4142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OrfB_Zn_ribbon (pfam07282), RVT-GII, chaperone_ClpB (TIGR03346)