myRT

myRT report for GCA_010692625.1_ASM1069262v1

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Seq: JAAHGM010000011.1 Okeania sp. SIO2C2 2C2_NODE_11, whole genome shotgun sequence (498588 bp)
Overview 1 RT 1: 121991-126680 bp Neighborhood of RT #1 [121991, 126680] YkfC RVT-GII GIIM Feature: gene Location: 121991-122338 bp Feature: gene Location: 122466-122636 bp Feature: gene Location: 123876-125318 bp Feature: domain Description: YkfC Location: 123930-124104 bp Feature: domain Description: YkfC Location: 1 23930-1 241 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124179-124833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 79-1 24833 bp Feature: domain Description: GIIM Note: maturase Location: 124911-125145 bp Feature: domain Description: GIIM Note: maturase Location: 1 2491 1 -1 251 45 bp Feature: gene Location: 125971-126276 bp Feature: gene Location: 126420-126680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHGM010000012.1 Okeania sp. SIO2C2 2C2_NODE_12, whole genome shotgun sequence (61707 bp)
Overview 1 RT 1: 17218-24043 bp Neighborhood of RT #1 [17218, 24048] RVT-UG4 RVT-UG18 metH Feature: gene Location: 17218-17385 bp Feature: gene Location: 17474-18067 bp Feature: gene Location: 18138-18575 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 18141-18294 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 18141-182 94 bp Feature: gene Location: 18734-19432 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 19235-19409 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 192 35-19409 bp Feature: gene Location: 19518-19991 bp Feature: gene Location: 20386-24048 bp Feature: domain Description: metH Location: 20455-24043 bp Feature: domain Description: metH Location: 2 0455-2 4043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, RVT-UG18, metH (TIGR02082)

Seq: JAAHGM010000144.1 Okeania sp. SIO2C2 2C2_NODE_144, whole genome shotgun sequence (2533 bp)
Overview 1 RT 1: 602-2351 bp Neighborhood of RT #1 [602, 2380] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 602-2380 bp Feature: domain Description: RVT_N Location: 719-962 bp Feature: domain Description: RVT_N Location: 719-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1703 bp Feature: domain Description: YkfC Location: 1856-2111 bp Feature: domain Description: YkfC Location: 1856-2111 bp Feature: domain Description: HNHc Note: nucleases Location: 2201-2351 bp Feature: domain Description: HNHc Note: nucleases Location: 2201-23 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JAAHGM010000146.1 Okeania sp. SIO2C2 2C2_NODE_146, whole genome shotgun sequence (2412 bp)
Overview 1 RT 1: 448-2296 bp Neighborhood of RT #1 [448, 2313] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 448-582 bp Feature: gene Location: 598-2313 bp Feature: domain Description: RVT_N Location: 652-895 bp Feature: domain Description: RVT_N Location: 652-895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 9-1627 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1912 bp Feature: domain Description: HNHc Note: nucleases Location: 2140-2296 bp Feature: domain Description: HNHc Note: nucleases Location: 214 0-2296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGM010000160.1 Okeania sp. SIO2C2 2C2_NODE_160, whole genome shotgun sequence (1507 bp)
Overview 1 RT 1: 111-1437 bp Neighborhood of RT #1 [111, 1505] RVT-GII GIIM McrA Feature: gene Location: 111-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-768 bp Feature: domain Description: GIIM Note: maturase Location: 840-1074 bp Feature: domain Description: GIIM Note: maturase Location: 840-1074 bp Feature: domain Description: McrA Location: 1143-1437 bp Feature: domain Description: McrA Location: 1143-1437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGM010000003.1 Okeania sp. SIO2C2 2C2_NODE_3, whole genome shotgun sequence (343424 bp)
Overview 1 RT 1: 22180-25133 bp 2 RT 2: 233320-236003 bp Neighborhood of RT #1 [22180, 25159] COG3503 RVT-GII EamA Neighborhood of RT #2 [233320, 236092] InsQ RVT-GII OrfB_Zn_ribbon Beta-lactamase2 Feature: gene Location: 22180-23115 bp Feature: domain Description: COG3503 Location: 22228-23050 bp Feature: domain Description: COG3503 Location: 22228-23050 bp Feature: gene Location: 23136-23288 bp Feature: gene Location: 23403-23660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23406-23586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23406 -23586 bp Feature: gene Location: 23928-24659 bp Feature: gene Location: 24917-25159 bp Feature: domain Description: EamA Location: 24923-25133 bp Feature: domain Description: EamA Location: 24923-25133 bp Feature: gene Location: 233320-233640 bp Feature: domain Description: InsQ Location: 233329-233614 bp Feature: domain Description: InsQ Location: 233329-2336 14 bp Feature: gene Location: 233789-234193 bp Feature: gene Location: 234195-234362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234204-234357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234204-234357 bp Feature: gene Location: 234411-234704 bp Feature: domain Description: OrfB_Zn_ribbon Location: 234483-234615 bp Feature: domain Description: OrfB_Zn_ribbon Location: 234483-2346 15 bp Feature: gene Location: 234788-236092 bp Feature: domain Description: Beta-lactamase2 Location: 235397-236003 bp Feature: domain Description: Beta-lactamase2 Location: 235397-236 003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3503 (Uncharacterized membrane protein ), RVT-GII, EamA (pfam00892), InsQ (COG0675), OrfB_Zn_ribbon (pfam07282), Beta-lactamase2 (pfam13354)

Seq: JAAHGM010000036.1 Okeania sp. SIO2C2 2C2_NODE_36, whole genome shotgun sequence (74583 bp)
Overview 1 RT 1: 34536-38739 bp Neighborhood of RT #1 [34536, 38792] RVT_N RVT-GII RVT-GII Lipoxygenase Feature: gene Location: 34536-34682 bp Feature: gene Location: 34698-34829 bp Feature: gene Location: 34920-35285 bp Feature: domain Description: RVT_N Location: 34929-35046 bp Feature: domain Description: RVT_N Location: 34929-35046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35094-35274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35094-3527 4 bp Feature: gene Location: 35373-35585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35418-35556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35418-35556 bp Feature: gene Location: 35809-35973 bp Feature: gene Location: 36843-38792 bp Feature: domain Description: Lipoxygenase Location: 37239-38739 bp Feature: domain Description: Lipoxygenase Location: 37 239-387 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Lipoxygenase (pfam00305)

Seq: JAAHGM010000044.1 Okeania sp. SIO2C2 2C2_NODE_44, whole genome shotgun sequence (58482 bp)
Overview 1 RT 1: 12840-19993 bp Neighborhood of RT #1 [12840, 19993] dam RVT_N RVT-GII GIIM Ycf66_N Feature: gene Location: 12840-13052 bp Feature: gene Location: 13681-14325 bp Feature: domain Description: dam Location: 13687-14314 bp Feature: domain Description: dam Location: 1368 7-14314 bp Feature: gene Location: 15095-16522 bp Feature: domain Description: RVT_N Location: 15137-15356 bp Feature: domain Description: RVT_N Location: 15137-15356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15401-16100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15401-16100 bp Feature: domain Description: GIIM Note: maturase Location: 16199-16433 bp Feature: domain Description: GIIM Note: maturase Location: 16199-16433 bp Feature: gene Location: 17847-18995 bp Feature: domain Description: Ycf66_N Location: 17880-18102 bp Feature: domain Description: Ycf66_N Location: 178 8 0-18 102 bp Feature: gene Location: 19790-19993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Ycf66_N (pfam07444)

Seq: JAAHGM010000006.1 Okeania sp. SIO2C2 2C2_NODE_6, whole genome shotgun sequence (297100 bp)
Overview 1 RT 1: 47025-55412 bp 2 RT 2: 113830-117678 bp Neighborhood of RT #1 [47025, 55420] RVT_N RVT-GII GIIM HNHc RNase_Z SpoIID Neighborhood of RT #2 [113830, 117678] KOG3275 RVT_N RVT-GII GIIM HNH Feature: gene Location: 47025-48302 bp Feature: gene Location: 48709-50508 bp Feature: gene Location: 50827-52578 bp Feature: domain Description: RVT_N Location: 50968-51211 bp Feature: domain Description: RVT_N Location: 509 68-51211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51253-51880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51253-51880 bp Feature: domain Description: GIIM Note: maturase Location: 51937-52165 bp Feature: domain Description: GIIM Note: maturase Location: 519 37-52165 bp Feature: domain Description: HNHc Note: nucleases Location: 52390-52549 bp Feature: domain Description: HNHc Note: nucleases Location: 5239 0-52549 bp Feature: gene Location: 53168-54127 bp Feature: domain Description: RNase_Z Location: 53192-54104 bp Feature: domain Description: RNase_Z Location: 5319 2-54104 bp Feature: gene Location: 54254-55420 bp Feature: domain Description: SpoIID Location: 54329-55412 bp Feature: domain Description: SpoIID Location: 54329 -55412 bp Feature: gene Location: 113830-114096 bp Feature: domain Description: KOG3275 Location: 113839-114091 bp Feature: domain Description: KOG3275 Location: 113839 -11409 1 bp Feature: gene Location: 114190-114495 bp Feature: gene Location: 114687-116528 bp Feature: domain Description: RVT_N Location: 114804-115047 bp Feature: domain Description: RVT_N Location: 114804-115047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115095-115785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11509 5-115785 bp Feature: domain Description: GIIM Note: maturase Location: 115860-116094 bp Feature: domain Description: GIIM Note: maturase Location: 115860-11609 4 bp Feature: domain Description: HNH Note: nucleases Location: 116307-116442 bp Feature: domain Description: HNH Note: nucleases Location: 116307-116442 bp Feature: gene Location: 116634-116876 bp Feature: gene Location: 117346-117678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RNase_Z (TIGR02651), SpoIID (pfam08486), KOG3275 (KOG3275, Zinc-binding protein of the histidine triad (HIT) family ), HNH (pfam01844)

Seq: JAAHGM010000074.1 Okeania sp. SIO2C2 2C2_NODE_74, whole genome shotgun sequence (31236 bp)
Overview 1 RT 1: 27177-30977 bp Neighborhood of RT #1 [27177, 31006] Ggt RVT_N RVT-GII Feature: gene Location: 27177-27416 bp Feature: gene Location: 27951-29726 bp Feature: domain Description: Ggt Location: 28050-29712 bp Feature: domain Description: Ggt Location: 28050-29712 bp Feature: gene Location: 30350-31006 bp Feature: domain Description: RVT_N Location: 30410-30650 bp Feature: domain Description: RVT_N Location: 30410 -30650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30701-30977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30701-30977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ggt (COG0405), RVT_N (pfam13655), RVT-GII

Seq: JAAHGM010000008.1 Okeania sp. SIO2C2 2C2_NODE_8, whole genome shotgun sequence (312902 bp)
Overview 1 RT 1: 310748-311968 bp Neighborhood of RT #1 [310748, 311991] RVT-GII Feature: gene Location: 310748-311176 bp Feature: gene Location: 311426-311695 bp Feature: gene Location: 311845-311991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311851-311968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311 851-311 968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAHGM010000085.1 Okeania sp. SIO2C2 2C2_NODE_85, whole genome shotgun sequence (25821 bp)
Overview 1 RT 1: 8754-11382 bp Neighborhood of RT #1 [8754, 11382] BHL RVT-GII GIIM Feature: gene Location: 8754-9041 bp Feature: domain Description: BHL Location: 8757-9021 bp Feature: domain Description: BHL Location: 8757-9021 bp Feature: gene Location: 9484-9657 bp Feature: gene Location: 9879-10277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9885-10053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9885-10053 bp Feature: domain Description: GIIM Note: maturase Location: 10110-10275 bp Feature: domain Description: GIIM Note: maturase Location: 10110-10275 bp Feature: gene Location: 10693-10905 bp Feature: gene Location: 11215-11382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BHL (smart00411), RVT-GII, GIIM (pfam08388)

Seq: JAAHGM010000009.1 Okeania sp. SIO2C2 2C2_NODE_9, whole genome shotgun sequence (343134 bp)
Overview 1 RT 1: 57479-61103 bp Neighborhood of RT #1 [57479, 61123] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 57479-58336 bp Feature: domain Description: YfmG Location: 57545-58319 bp Feature: domain Description: YfmG Location: 57545-58319 bp Feature: gene Location: 58454-58690 bp Feature: gene Location: 58671-59609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58761-59400 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58761-59400 bp Feature: gene Location: 59784-60125 bp Feature: domain Description: Avd_like Location: 59802-60108 bp Feature: domain Description: Avd_like Location: 59802-60108 bp Feature: gene Location: 60248-61123 bp Feature: domain Description: YfmG Location: 60305-61103 bp Feature: domain Description: YfmG Location: 60305-61103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAAHGM010000093.1 Okeania sp. SIO2C2 2C2_NODE_93, whole genome shotgun sequence (20418 bp)
Overview 1 RT 1: 3182-8915 bp Neighborhood of RT #1 [3182, 8915] COG3293 RVT_N RVT-GII GIIM HNHc SLH OprB Feature: gene Location: 3182-3373 bp Feature: domain Description: COG3293 Location: 3212-3365 bp Feature: domain Description: COG3293 Location: 3212-3365 bp Feature: gene Location: 3925-4089 bp Feature: gene Location: 4926-6593 bp Feature: domain Description: RVT_N Location: 4947-5190 bp Feature: domain Description: RVT_N Location: 4947-5190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5235-5901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5235-5901 bp Feature: domain Description: GIIM Note: maturase Location: 5982-6207 bp Feature: domain Description: GIIM Note: maturase Location: 5982-6207 bp Feature: domain Description: HNHc Note: nucleases Location: 6378-6543 bp Feature: domain Description: HNHc Note: nucleases Location: 6378-6543 bp Feature: gene Location: 6812-8554 bp Feature: domain Description: SLH Location: 7118-7244 bp Feature: domain Description: SLH Location: 7118-7244 bp Feature: domain Description: OprB Location: 7319-8552 bp Feature: domain Description: OprB Location: 7319-8552 bp Feature: gene Location: 8778-8915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SLH (pfam00395), OprB (pfam04966)