myRT

myRT report for GCA_010692635.1_ASM1069263v1

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Seq: JAAHGL010000197.1 Symploca sp. SIO2C1 2C1_NODE_197, whole genome shotgun sequence (13397 bp)
Overview 1 RT 1: 8493-13297 bp Neighborhood of RT #1 [8493, 13338] PRK13922 PRK13927 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 8493-9227 bp Feature: domain Description: PRK13922 Location: 8592-9213 bp Feature: domain Description: PRK1 3922 Location: 8592-921 3 bp Feature: gene Location: 9563-10570 bp Feature: domain Description: PRK13927 Location: 9566-10544 bp Feature: domain Description: PRK1 3927 Location: 9566-1 0544 bp Feature: gene Location: 11629-13338 bp Feature: domain Description: RVT_N Location: 11662-11908 bp Feature: domain Description: RVT_N Location: 1 1 662-1 1 908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11950-12616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 950-1 261 6 bp Feature: domain Description: GIIM Note: maturase Location: 12718-12955 bp Feature: domain Description: GIIM Note: maturase Location: 1 271 8-1 2955 bp Feature: domain Description: HNHc Note: nucleases Location: 13144-13297 bp Feature: domain Description: HNHc Note: nucleases Location: 1 31 44-1 3297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGL010000201.1 Symploca sp. SIO2C1 2C1_NODE_201, whole genome shotgun sequence (13312 bp)
Overview 1 RT 1: 5232-8865 bp Neighborhood of RT #1 [5232, 10295] HTH_XRE RVT-UG4 NirD Feature: gene Location: 5232-5555 bp Feature: domain Description: HTH_XRE Location: 5340-5493 bp Feature: domain Description: HTH_XRE Location: 5340-5493 bp Feature: gene Location: 6169-6597 bp Feature: gene Location: 6616-6843 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6625-6766 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 662 5-6766 bp Feature: gene Location: 7040-7714 bp Feature: gene Location: 8550-10295 bp Feature: domain Description: NirD Location: 8568-8865 bp Feature: domain Description: NirD Location: 8568-8865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG4, NirD (COG2146)

Seq: JAAHGL010000028.1 Symploca sp. SIO2C1 2C1_NODE_28, whole genome shotgun sequence (64933 bp)
Overview 1 RT 1: 3-2487 bp Neighborhood of RT #1 [3, 2487] RVT-GII GIIM McrA YkuD_like Feature: gene Location: 3-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 2-3 69 bp Feature: domain Description: GIIM Note: maturase Location: 468-699 bp Feature: domain Description: GIIM Note: maturase Location: 468-699 bp Feature: domain Description: McrA Location: 780-1056 bp Feature: domain Description: McrA Location: 780-1056 bp Feature: gene Location: 1229-1933 bp Feature: domain Description: YkuD_like Location: 1508-1925 bp Feature: domain Description: YkuD_like Location: 1508-1925 bp Feature: gene Location: 1987-2487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), YkuD_like (cl21614)

Seq: JAAHGL010000322.1 Symploca sp. SIO2C1 2C1_NODE_322, whole genome shotgun sequence (6248 bp)
Overview 1 RT 1: 102-2636 bp Neighborhood of RT #1 [102, 2641] RVT_N RVT-GII MetH2 Feature: gene Location: 102-812 bp Feature: domain Description: RVT_N Location: 123-369 bp Feature: domain Description: RVT_N Location: 123-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 11-786 bp Feature: gene Location: 1045-1257 bp Feature: gene Location: 2417-2641 bp Feature: domain Description: MetH2 Location: 2426-2636 bp Feature: domain Description: MetH2 Location: 24 26-2636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, MetH2 (COG1410)

Seq: JAAHGL010000333.1 Symploca sp. SIO2C1 2C1_NODE_333, whole genome shotgun sequence (5808 bp)
Overview 1 RT 1: 102-3683 bp Neighborhood of RT #1 [102, 3683] RVT_N RVT-GII RVT-UG4 PDDEXK_2 Feature: gene Location: 102-827 bp Feature: domain Description: RVT_N Location: 138-384 bp Feature: domain Description: RVT_N Location: 138-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-801 bp Feature: gene Location: 1457-2179 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1805-2144 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1805 -2144 bp Feature: gene Location: 2558-3514 bp Feature: domain Description: PDDEXK_2 Location: 2630-3320 bp Feature: domain Description: PDDEXK_2 Location: 2630-3320 bp Feature: gene Location: 3522-3683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, RVT-UG4, PDDEXK_2 (pfam12784)

Seq: JAAHGL010000355.1 Symploca sp. SIO2C1 2C1_NODE_355, whole genome shotgun sequence (4742 bp)
Overview 1 RT 1: 2296-4740 bp Neighborhood of RT #1 [2296, 4740] RVT-UG4 Feature: gene Location: 2296-2523 bp Feature: gene Location: 2683-2826 bp Feature: gene Location: 3093-3791 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3210-3585 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3210-3585 bp Feature: gene Location: 4003-4740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: JAAHGL010000398.1 Symploca sp. SIO2C1 2C1_NODE_398, whole genome shotgun sequence (3096 bp)
Overview 1 RT 1: 123-3071 bp Neighborhood of RT #1 [123, 3094] RVT-UG4 RVT-GII GIIM McrA Feature: gene Location: 123-1358 bp Feature: gene Location: 1508-1891 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1532-1673 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1532-167 3 bp Feature: gene Location: 1979-3094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2105-237 8 bp Feature: domain Description: GIIM Note: maturase Location: 2483-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2483-27 11 bp Feature: domain Description: McrA Location: 2762-3071 bp Feature: domain Description: McrA Location: 27 62-307 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGL010000412.1 Symploca sp. SIO2C1 2C1_NODE_412, whole genome shotgun sequence (2520 bp)
Overview 1 RT 1: 3-2408 bp Neighborhood of RT #1 [3, 2518] RVT-GII GIIM McrA RVT-GII GIIM HNH Feature: gene Location: 3-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-435 bp Feature: domain Description: GIIM Note: maturase Location: 537-765 bp Feature: domain Description: GIIM Note: maturase Location: 537-765 bp Feature: domain Description: McrA Location: 849-1128 bp Feature: domain Description: McrA Location: 8 49-1128 bp Feature: gene Location: 1319-2518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1445-1730 bp Feature: domain Description: GIIM Note: maturase Location: 1829-2063 bp Feature: domain Description: GIIM Note: maturase Location: 18 29-2063 bp Feature: domain Description: HNH Note: nucleases Location: 2273-2408 bp Feature: domain Description: HNH Note: nucleases Location: 2273-2408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), HNH (pfam01844)

Seq: JAAHGL010000418.1 Symploca sp. SIO2C1 2C1_NODE_418, whole genome shotgun sequence (2383 bp)
Overview 1 RT 1: 110-1748 bp Neighborhood of RT #1 [110, 1771] RVT-GII GIIM HNHc Feature: gene Location: 110-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39 2-1076 bp Feature: domain Description: GIIM Note: maturase Location: 1142-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1142-1370 bp Feature: domain Description: HNHc Note: nucleases Location: 1592-1748 bp Feature: domain Description: HNHc Note: nucleases Location: 159 2-1748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAHGL010000424.1 Symploca sp. SIO2C1 2C1_NODE_424, whole genome shotgun sequence (2189 bp)
Overview 1 RT 1: 119-1948 bp Neighborhood of RT #1 [119, 1948] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 119-1615 bp Feature: domain Description: RVT_N Location: 155-398 bp Feature: domain Description: RVT_N Location: 155-398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-10 46 bp Feature: domain Description: GIIM Note: maturase Location: 1106-1298 bp Feature: domain Description: GIIM Note: maturase Location: 110 6-1298 bp Feature: domain Description: McrA Location: 1343-1601 bp Feature: domain Description: McrA Location: 1343-1601 bp Feature: gene Location: 1808-1948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGL010000005.1 Symploca sp. SIO2C1 2C1_NODE_5, whole genome shotgun sequence (84129 bp)
Overview 1 RT 1: 3-12861 bp Neighborhood of RT #1 [3, 12878] RVT-GII HNHc Dob10 FAAL PKS_PP PksD PKS_PP Sulfotransfer_3 MhpC Feature: gene Location: 3-758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-369 bp Feature: domain Description: HNHc Note: nucleases Location: 516-723 bp Feature: domain Description: HNHc Note: nucleases Location: 516-723 bp Feature: gene Location: 1102-3789 bp Feature: domain Description: Dob10 Location: 1135-3775 bp Feature: domain Description: Dob10 Location: 11 35-3775 bp Feature: gene Location: 4155-12878 bp Feature: domain Description: FAAL Location: 4239-5871 bp Feature: domain Description: FAAL Location: 4239-5871 bp Feature: domain Description: PKS_PP Location: 5991-6219 bp Feature: domain Description: PKS_PP Location: 5991-6219 bp Feature: domain Description: PksD Location: 6288-10392 bp Feature: domain Description: PksD Location: 6288-10392 bp Feature: domain Description: PKS_PP Location: 10638-10881 bp Feature: domain Description: PKS_PP Location: 10638-10881 bp Feature: domain Description: Sulfotransfer_3 Location: 11061-11688 bp Feature: domain Description: Sulfotransfer_3 Location: 11 061-11 688 bp Feature: domain Description: MhpC Location: 12066-12861 bp Feature: domain Description: MhpC Location: 12066-12861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Dob10 (COG4581), FAAL (cd05931), PKS_PP (smart00823), PksD (COG3321), Sulfotransfer_3 (pfam13469), MhpC (COG0596)

Seq: JAAHGL010000051.1 Symploca sp. SIO2C1 2C1_NODE_51, whole genome shotgun sequence (41191 bp)
Overview 1 RT 1: 38566-41068 bp Neighborhood of RT #1 [38566, 41094] InsQ RVT_N RVT-GII Feature: gene Location: 38566-39642 bp Feature: domain Description: InsQ Location: 38569-39634 bp Feature: domain Description: InsQ Location: 38569-39634 bp Feature: gene Location: 39989-40318 bp Feature: gene Location: 40351-41094 bp Feature: domain Description: RVT_N Location: 40402-40645 bp Feature: domain Description: RVT_N Location: 40402-40645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40687-41068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40687-41068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII

Seq: JAAHGL010000063.1 Symploca sp. SIO2C1 2C1_NODE_63, whole genome shotgun sequence (35582 bp)
Overview 1 RT 1: 102-2063 bp Neighborhood of RT #1 [102, 2063] RVT_N RVT-GII Feature: gene Location: 102-821 bp Feature: domain Description: RVT_N Location: 138-384 bp Feature: domain Description: RVT_N Location: 13 8-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-795 bp Feature: gene Location: 1399-1749 bp Feature: gene Location: 1854-2063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHGL010000082.1 Symploca sp. SIO2C1 2C1_NODE_82, whole genome shotgun sequence (28654 bp)
Overview 1 RT 1: 26735-28527 bp Neighborhood of RT #1 [26735, 28553] RVT-GII Feature: gene Location: 26735-27526 bp Feature: gene Location: 27541-27735 bp Feature: gene Location: 28152-28553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28173-28527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28173-28527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII