myRT

myRT report for GCA_010692685.1_ASM1069268v1

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Seq: JAAHGU010000122.1 Okeania sp. SIO2F5 2F5_NODE_122, whole genome shotgun sequence (22185 bp)
Overview 1 RT 1: 20201-22183 bp Neighborhood of RT #1 [20201, 22183] RVT_N RVT-GII RVT-GII Feature: gene Location: 20201-20476 bp Feature: gene Location: 20655-20801 bp Feature: gene Location: 20863-21369 bp Feature: domain Description: RVT_N Location: 20866-21064 bp Feature: domain Description: RVT_N Location: 20866-21 064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21112-21367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 1 2-21 367 bp Feature: gene Location: 21521-21826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21551-21797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 551 -21 797 bp Feature: gene Location: 21971-22183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHGU010000123.1 Okeania sp. SIO2F5 2F5_NODE_123, whole genome shotgun sequence (22104 bp)
Overview 1 RT 1: 571-6351 bp Neighborhood of RT #1 [571, 6351] ThyX RVT-GII GIIM McrA RVT_N RVT-GII RVT_N Feature: gene Location: 571-960 bp Feature: gene Location: 1235-1717 bp Feature: domain Description: ThyX Location: 1238-1694 bp Feature: domain Description: ThyX Location: 12 38-1694 bp Feature: gene Location: 1916-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1955-2 186 bp Feature: domain Description: GIIM Note: maturase Location: 2261-2492 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 61-2 492 bp Feature: domain Description: McrA Location: 2567-2852 bp Feature: domain Description: McrA Location: 2 567-2 852 bp Feature: gene Location: 2841-3746 bp Feature: domain Description: RVT_N Location: 3009-3252 bp Feature: domain Description: RVT_N Location: 3009-32 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3300-3681 bp Feature: gene Location: 4852-5247 bp Feature: domain Description: RVT_N Location: 4888-5134 bp Feature: domain Description: RVT_N Location: 4888-5134 bp Feature: gene Location: 6163-6351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThyX (COG1351), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655)

Seq: JAAHGU010000125.1 Okeania sp. SIO2F5 2F5_NODE_125, whole genome shotgun sequence (21546 bp)
Overview 1 RT 1: 1083-8892 bp Neighborhood of RT #1 [1083, 8990] PRK02504 RVT-GII GIIM McrA PRK13922 UvrD Feature: gene Location: 1083-1382 bp Feature: gene Location: 1432-3012 bp Feature: domain Description: PRK02504 Location: 1444-2971 bp Feature: domain Description: PRK02504 Location: 1444-2971 bp Feature: gene Location: 3642-4712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3645-3972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 645-3 972 bp Feature: domain Description: GIIM Note: maturase Location: 4071-4305 bp Feature: domain Description: GIIM Note: maturase Location: 4071-43 05 bp Feature: domain Description: McrA Location: 4392-4677 bp Feature: domain Description: McrA Location: 43 92-4677 bp Feature: gene Location: 4982-5419 bp Feature: domain Description: PRK13922 Location: 5024-5276 bp Feature: domain Description: PRK13 922 Location: 5024-5276 bp Feature: gene Location: 6609-8990 bp Feature: domain Description: UvrD Location: 6738-8892 bp Feature: domain Description: UvrD Location: 673 8-8892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02504 (NAD(P)H-quinone oxidoreductase subunit N), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK13922 (rod shape-determining protein MreC; Provisional), UvrD (COG0210)

Seq: JAAHGU010000017.1 Okeania sp. SIO2F5 2F5_NODE_17, whole genome shotgun sequence (84731 bp)
Overview 1 RT 1: 37240-44074 bp Neighborhood of RT #1 [37240, 44079] Ycf66_N RVT_N RVT-GII GIIM dam DinB Feature: gene Location: 37240-37554 bp Feature: gene Location: 38314-39462 bp Feature: domain Description: Ycf66_N Location: 38347-38569 bp Feature: domain Description: Ycf66_N Location: 3834 7-38569 bp Feature: gene Location: 40941-42401 bp Feature: domain Description: RVT_N Location: 40983-41208 bp Feature: domain Description: RVT_N Location: 4 0983-4 1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41250-41928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1250-4 1928 bp Feature: domain Description: GIIM Note: maturase Location: 42027-42261 bp Feature: domain Description: GIIM Note: maturase Location: 4 2027-4 2261 bp Feature: gene Location: 42835-43632 bp Feature: domain Description: dam Location: 42877-43621 bp Feature: domain Description: dam Location: 4 2877-4 3621 bp Feature: gene Location: 43891-44079 bp Feature: domain Description: DinB Location: 43900-44074 bp Feature: domain Description: DinB Location: 4 3900-4 4 074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ycf66_N (pfam07444), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), dam (TIGR00571), DinB (pfam05163)

Seq: JAAHGU010000183.1 Okeania sp. SIO2F5 2F5_NODE_183, whole genome shotgun sequence (12325 bp)
Overview 1 RT 1: 352-2185 bp Neighborhood of RT #1 [352, 2265] RVT-GII nusB COG2928 Feature: gene Location: 352-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 5 -5 62 bp Feature: gene Location: 677-1300 bp Feature: domain Description: nusB Location: 689-1286 bp Feature: domain Description: nusB Location: 689-1286 bp Feature: gene Location: 1546-2265 bp Feature: domain Description: COG2928 Location: 1564-2185 bp Feature: domain Description: COG2928 Location: 15 64-2185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nusB (TIGR01951), COG2928 (Uncharacterized membrane protein )

Seq: JAAHGU010000193.1 Okeania sp. SIO2F5 2F5_NODE_193, whole genome shotgun sequence (11507 bp)
Overview 1 RT 1: 3-5537 bp Neighborhood of RT #1 [3, 5537] TcA_TcB_BD YkfC RVT-GII GIIM Feature: gene Location: 3-128 bp Feature: gene Location: 277-1854 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: domain Description: TcA_TcB_BD Location: 1033-1846 bp Feature: gene Location: 2918-4360 bp Feature: domain Description: YkfC Location: 2972-3146 bp Feature: domain Description: YkfC Location: 2972-3146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-3875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-3875 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4187 bp Feature: gene Location: 4787-5092 bp Feature: gene Location: 5232-5537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcA_TcB_BD (pfam18276), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: JAAHGU010000002.1 Okeania sp. SIO2F5 2F5_NODE_2, whole genome shotgun sequence (105661 bp)
Overview 1 RT 1: 38354-41143 bp Neighborhood of RT #1 [38354, 41163] RVT-GII GIIM BHL Feature: gene Location: 38354-38647 bp Feature: gene Location: 39040-39210 bp Feature: gene Location: 39541-40185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-39814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39628-39814 bp Feature: domain Description: GIIM Note: maturase Location: 39871-40057 bp Feature: domain Description: GIIM Note: maturase Location: 3987 1-40057 bp Feature: gene Location: 40260-40433 bp Feature: gene Location: 40876-41163 bp Feature: domain Description: BHL Location: 40879-41143 bp Feature: domain Description: BHL Location: 4087 9-41143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BHL (smart00411)

Seq: JAAHGU010000282.1 Okeania sp. SIO2F5 2F5_NODE_282, whole genome shotgun sequence (2465 bp)
Overview 1 RT 1: 1-2275 bp Neighborhood of RT #1 [1, 2275] RVT_N RVT-GII GIIM McrA Feature: gene Location: 1-1848 bp Feature: domain Description: RVT_N Location: 118-361 bp Feature: domain Description: RVT_N Location: 118 -361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1102 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1408 bp Feature: domain Description: McrA Location: 1492-1777 bp Feature: domain Description: McrA Location: 1492-1777 bp Feature: gene Location: 2075-2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAHGU010000313.1 Okeania sp. SIO2F5 2F5_NODE_313, whole genome shotgun sequence (1283 bp)
Overview 1 RT 1: 113-1259 bp Neighborhood of RT #1 [113, 1282] RVT_N RVT-GII Feature: gene Location: 113-1282 bp Feature: domain Description: RVT_N Location: 275-518 bp Feature: domain Description: RVT_N Location: 275-518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAHGU010000055.1 Okeania sp. SIO2F5 2F5_NODE_55, whole genome shotgun sequence (41659 bp)
Overview 1 RT 1: 5973-11396 bp Neighborhood of RT #1 [5973, 11437] Beta-lactamase2 OrfB_Zn_ribbon RVT-GII HTH_OrfB_IS605 chaperone_ClpB Feature: gene Location: 5973-7277 bp Feature: domain Description: Beta-lactamase2 Location: 6582-7188 bp Feature: domain Description: Beta-lactamase2 Location: 6582-7188 bp Feature: gene Location: 7361-7654 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7433-7565 bp Feature: domain Description: OrfB_Zn_ribbon Location: 7433-7565 bp Feature: gene Location: 7855-8142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867-8116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867-8116 bp Feature: gene Location: 8454-8699 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8457-8586 bp Feature: domain Description: HTH_OrfB_IS605 Location: 8457-8586 bp Feature: gene Location: 8825-11437 bp Feature: domain Description: chaperone_ClpB Location: 8852-11396 bp Feature: domain Description: chaperone_ClpB Location: 8852-11396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta-lactamase2 (pfam13354), OrfB_Zn_ribbon (pfam07282), RVT-GII, HTH_OrfB_IS605 (pfam12323), chaperone_ClpB (TIGR03346)

Seq: JAAHGU010000056.1 Okeania sp. SIO2F5 2F5_NODE_56, whole genome shotgun sequence (41603 bp)
Overview 1 RT 1: 33261-38061 bp Neighborhood of RT #1 [33261, 39188] COG3503 RVT-GII AAA_35 COG5635 Feature: gene Location: 33261-33584 bp Feature: domain Description: COG3503 Location: 33285-33537 bp Feature: domain Description: COG3503 Location: 33285-33537 bp Feature: gene Location: 33779-33919 bp Feature: gene Location: 34096-34353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34099-34279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34099-34279 bp Feature: gene Location: 34651-35352 bp Feature: gene Location: 36300-39188 bp Feature: domain Description: AAA_35 Location: 36330-37362 bp Feature: domain Description: AAA_35 Location: 36330-37362 bp Feature: domain Description: COG5635 Location: 37656-38061 bp Feature: domain Description: COG5635 Location: 37656-38061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3503 (Uncharacterized membrane protein ), RVT-GII, AAA_35 (pfam14516), COG5635 (Predicted NTPase, NACHT family domain )

Seq: JAAHGU010000006.1 Okeania sp. SIO2F5 2F5_NODE_6, whole genome shotgun sequence (306437 bp)
Overview 1 RT 1: 239706-247210 bp Neighborhood of RT #1 [239706, 247210] metH RVT-UG18 RVT-UG4 Feature: gene Location: 239706-243380 bp Feature: domain Description: metH Location: 239775-243375 bp Feature: domain Description: metH Location: 239775-243375 bp Feature: gene Location: 243828-244301 bp Feature: gene Location: 244389-244934 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 244737-244920 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 244737-244920 bp Feature: gene Location: 245104-245580 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 245107-245260 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 245107-245260 bp Feature: gene Location: 246380-246745 bp Feature: gene Location: 246920-247210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT metH (TIGR02082), RVT-UG18, RVT-UG4

Seq: JAAHGU010000007.1 Okeania sp. SIO2F5 2F5_NODE_7, whole genome shotgun sequence (240836 bp)
Overview 1 RT 1: 65136-71628 bp Neighborhood of RT #1 [65136, 71642] RVT-UG4 InsQ RVT-UG4 PDDEXK_2 DUF4351 PDDEXK_2 DUF4351 Feature: gene Location: 65136-65471 bp Feature: gene Location: 66405-67112 bp Feature: gene Location: 67409-67867 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 67436-67778 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 67436-67778 bp Feature: gene Location: 67876-69078 bp Feature: domain Description: InsQ Location: 67879-68986 bp Feature: domain Description: InsQ Location: 67879-68986 bp Feature: gene Location: 69145-69597 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 69406-69571 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 69406-69571 bp Feature: gene Location: 69796-70716 bp Feature: domain Description: PDDEXK_2 Location: 69814-70516 bp Feature: domain Description: PDDEXK_2 Location: 69814-70516 bp Feature: domain Description: DUF4351 Location: 70534-70699 bp Feature: domain Description: DUF4351 Location: 70534-70699 bp Feature: gene Location: 70731-71642 bp Feature: domain Description: PDDEXK_2 Location: 70749-71427 bp Feature: domain Description: PDDEXK_2 Location: 70749-71427 bp Feature: domain Description: DUF4351 Location: 71457-71628 bp Feature: domain Description: DUF4351 Location: 71457-71628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, InsQ (COG0675), PDDEXK_2 (pfam12784), DUF4351 (pfam14261)

Seq: JAAHGU010000070.1 Okeania sp. SIO2F5 2F5_NODE_70, whole genome shotgun sequence (33528 bp)
Overview 1 RT 1: 9151-16137 bp Neighborhood of RT #1 [9151, 16151] carot_isom RVT-GII RNase_T2_prok HpnA Feature: gene Location: 9151-10773 bp Feature: gene Location: 11670-13169 bp Feature: domain Description: carot_isom Location: 11682-13137 bp Feature: domain Description: carot_isom Location: 11682-13137 bp Feature: gene Location: 13396-13749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13429-13714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13429-13714 bp Feature: gene Location: 14196-15164 bp Feature: domain Description: RNase_T2_prok Location: 14547-15090 bp Feature: domain Description: RNase_T2_prok Location: 14 547-15090 bp Feature: gene Location: 15168-16151 bp Feature: domain Description: HpnA Location: 15171-16137 bp Feature: domain Description: HpnA Location: 15171-16137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carot_isom (TIGR02730), RVT-GII, RNase_T2_prok (cd01062), HpnA (TIGR03466)