myRT

myRT report for GCA_010721835.1_ASM1072183v1

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Seq: BLKQ01000004.1 Streptococcus canis FU97 DNA, ScFU97_contig04, whole genome shotgun sequence (173727 bp)
Overview 1 RT 1: 106246-115744 bp Neighborhood of RT #1 [106246, 115773] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Feature: gene Location: 106246-106545 bp Feature: gene Location: 106616-107425 bp Feature: gene Location: 107559-109325 bp Feature: RT Description: RVT_N Location: 107712-107955 bp Feature: RT Description: RVT_N Location: 1 0771 2-1 07955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108000-108648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08000-1 08648 bp Feature: domain Description: GIIM Note: maturase Location: 108711-108933 bp Feature: domain Description: GIIM Note: maturase Location: 1 0871 1 -1 08933 bp Feature: gene Location: 109332-109625 bp Feature: gene Location: 109777-115773 bp Feature: domain Description: N6_Mtase Location: 111790-112381 bp Feature: domain Description: N6_Mtase Location: 1 1 1 790-1 1 2381 bp Feature: domain Description: COG4646 Location: 112972-115276 bp Feature: domain Description: COG4646 Location: 1 1 2972-1 1 5276 bp Feature: domain Description: KOG0390 Location: 115543-115744 bp Feature: domain Description: KOG0390 Location: 1 1 5543-1 1 5744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )

Seq: BLKQ01000005.1 Streptococcus canis FU97 DNA, ScFU97_contig05, whole genome shotgun sequence (148531 bp)
Overview 1 RT 1: 67-13838 bp 2 RT 2: 23220-27623 bp Neighborhood of RT #1 [67, 13846] COG4646 Helicase_C RVT-GII HNHc PHA03411 COG4646 COG4646 COG2865 Neighborhood of RT #2 [23220, 27664] RVT-GII HNHc Maff2 SSB_OBF Feature: gene Location: 67-744 bp Feature: gene Location: 769-3300 bp Feature: domain Description: COG4646 Location: 868-1438 bp Feature: domain Description: COG4646 Location: 868-1438 bp Feature: domain Description: Helicase_C Location: 1627-1846 bp Feature: domain Description: Helicase_C Location: 162 7-1846 bp Feature: gene Location: 3377-5272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671-4385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671-4385 bp Feature: domain Description: HNHc Note: nucleases Location: 5015-5186 bp Feature: domain Description: HNHc Note: nucleases Location: 5015-5186 bp Feature: gene Location: 6005-12334 bp Feature: domain Description: PHA03411 Location: 9602-9851 bp Feature: domain Description: PHA03411 Location: 9602 -9851 bp Feature: domain Description: COG4646 Location: 10166-10922 bp Feature: domain Description: COG4646 Location: 10166-1092 2 bp Feature: domain Description: COG4646 Location: 11186-12323 bp Feature: domain Description: COG4646 Location: 11186-12 32 3 bp Feature: gene Location: 12419-13846 bp Feature: domain Description: COG2865 Location: 12422-13838 bp Feature: domain Description: COG2 865 Location: 12 42 2 -13838 bp Feature: gene Location: 23220-23486 bp Feature: gene Location: 23501-24364 bp Feature: gene Location: 24636-26504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24963-25701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4963-2 5701 bp Feature: domain Description: HNHc Note: nucleases Location: 26232-26394 bp Feature: domain Description: HNHc Note: nucleases Location: 2 62 32 -2 6394 bp Feature: gene Location: 27218-27349 bp Feature: domain Description: Maff2 Location: 27221-27347 bp Feature: domain Description: Maff2 Location: 2 72 2 1-2 7347 bp Feature: gene Location: 27353-27664 bp Feature: domain Description: SSB_OBF Location: 27407-27623 bp Feature: domain Description: SSB_OBF Location: 2 7407-2 762 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, HNHc (smart00507), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), Maff2 (pfam12750), SSB_OBF (cd04496)