myRT

myRT report for GCA_010747425.1_ASM1074742v1

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Seq: JAAGOG010000075.1 Nostoc sp. UIC 10630 NODE_141_length_33720_cov_33.4609/0, whole genome shotgun sequence (33720 bp)
Overview 1 RT 1: 14040-17610 bp Neighborhood of RT #1 [14040, 17610] RVT_N RVT-GII GIIM McrA Feature: gene Location: 14040-14561 bp Feature: gene Location: 14635-14832 bp Feature: gene Location: 15120-16910 bp Feature: RT Description: RVT_N Location: 15201-15447 bp Feature: RT Description: RVT_N Location: 1 5201 -1 5447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15489-16167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5489-1 61 67 bp Feature: domain Description: GIIM Note: maturase Location: 16269-16500 bp Feature: domain Description: GIIM Note: maturase Location: 1 6269-1 6500 bp Feature: domain Description: McrA Location: 16557-16854 bp Feature: domain Description: McrA Location: 1 6557-1 6854 bp Feature: gene Location: 16920-17126 bp Feature: gene Location: 17296-17610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAGOG010000004.1 Nostoc sp. UIC 10630 NODE_16_length_119672_cov_45.9089/0, whole genome shotgun sequence (119672 bp)
Overview 1 RT 1: 32512-37737 bp Neighborhood of RT #1 [32512, 37784] RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 Feature: gene Location: 32512-33090 bp Feature: gene Location: 33216-33563 bp Feature: gene Location: 34255-35364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34492-35101 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34492 -35101 bp Feature: gene Location: 35596-35820 bp Feature: gene Location: 36246-37784 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 36279-36429 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 362 79-3642 9 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 36678-36786 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 36678-36786 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 37098-37737 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 37098-37737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SPFH_eoslipins_u2 (cd13438)

Seq: JAAGOG010000390.1 Nostoc sp. UIC 10630 NODE_1980_length_2641_cov_31.4002/0, whole genome shotgun sequence (2640 bp)
Overview 1 RT 1: 142-2601 bp Neighborhood of RT #1 [142, 2601] RVT_N RVT-GII Feature: gene Location: 142-744 bp Feature: gene Location: 952-1107 bp Feature: gene Location: 1356-1973 bp Feature: RT Description: RVT_N Location: 1440-1686 bp Feature: RT Description: RVT_N Location: 1440-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-1959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728-1959 bp Feature: gene Location: 2018-2233 bp Feature: gene Location: 2464-2601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAGOG010000174.1 Nostoc sp. UIC 10630 NODE_271_length_16661_cov_45.0546/0, whole genome shotgun sequence (16661 bp)
Overview 1 RT 1: 10797-14726 bp Neighborhood of RT #1 [10797, 14788] McrA RVT_N RVT-GII SurA Feature: gene Location: 10797-12131 bp Feature: gene Location: 12411-12767 bp Feature: domain Description: McrA Location: 12471-12765 bp Feature: domain Description: McrA Location: 124 71-12765 bp Feature: gene Location: 12769-13125 bp Feature: RT Description: RVT_N Location: 12775-12961 bp Feature: RT Description: RVT_N Location: 12775-12961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13012-13090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13012-13090 bp Feature: gene Location: 13414-13641 bp Feature: gene Location: 13997-14788 bp Feature: domain Description: SurA Location: 14099-14726 bp Feature: domain Description: SurA Location: 14 099-14 726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, SurA (COG0760)

Seq: JAAGOG010000177.1 Nostoc sp. UIC 10630 NODE_275_length_16353_cov_40.9478/0, whole genome shotgun sequence (16353 bp)
Overview 1 RT 1: 12965-16074 bp Neighborhood of RT #1 [12965, 16352] GlnQ XisI RVT-Retrons Feature: gene Location: 12965-13705 bp Feature: domain Description: GlnQ Location: 12986-13700 bp Feature: domain Description: GlnQ Location: 12986-13700 bp Feature: gene Location: 14203-14535 bp Feature: domain Description: XisI Location: 14206-14530 bp Feature: domain Description: XisI Location: 14206-145 30 bp Feature: gene Location: 15255-16352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15459-16074 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 45 9-16074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), XisI (pfam08869), RVT-Retrons

Seq: JAAGOG010000185.1 Nostoc sp. UIC 10630 NODE_284_length_15747_cov_33.301/0, whole genome shotgun sequence (15747 bp)
Overview 1 RT 1: 7017-10041 bp Neighborhood of RT #1 [7017, 10041] YfmG Avd_like RVT-DGRs Feature: gene Location: 7017-7871 bp Feature: domain Description: YfmG Location: 7053-7854 bp Feature: domain Description: YfmG Location: 7053-7854 bp Feature: gene Location: 8006-8350 bp Feature: domain Description: Avd_like Location: 8024-8330 bp Feature: domain Description: Avd_like Location: 8024-8330 bp Feature: gene Location: 8372-9430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8582-9221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8582-9221 bp Feature: gene Location: 9557-9775 bp Feature: gene Location: 9820-10041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: JAAGOG010000411.1 Nostoc sp. UIC 10630 NODE_3618_length_1925_cov_75.4042/0, whole genome shotgun sequence (1925 bp)
Overview 1 RT 1: 124-1918 bp Neighborhood of RT #1 [124, 1923] RVT_N RVT-GII GIIM Feature: gene Location: 124-405 bp Feature: gene Location: 526-1923 bp Feature: RT Description: RVT_N Location: 640-880 bp Feature: RT Description: RVT_N Location: 640-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1612 bp Feature: domain Description: GIIM Note: maturase Location: 1714-1918 bp Feature: domain Description: GIIM Note: maturase Location: 17 14-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAGOG010000329.1 Nostoc sp. UIC 10630 NODE_586_length_5478_cov_45.5245/0, whole genome shotgun sequence (5478 bp)
Overview 1 RT 1: 74-5430 bp Neighborhood of RT #1 [74, 5438] cysS YejR RVT-GII TM_helix TM_helix TM_helix TM_helix TM_helix Polyketide_cyc2 Feature: gene Location: 74-1597 bp Feature: domain Description: cysS Location: 146-1592 bp Feature: domain Description: cysS Location: 146-1592 bp Feature: gene Location: 1666-2766 bp Feature: domain Description: YejR Location: 1723-2725 bp Feature: domain Description: YejR Location: 1723-2725 bp Feature: gene Location: 2872-3087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2953-3076 bp Feature: gene Location: 3146-4798 bp Feature: domain Description: TM_helix Location: 3278-3416 bp Feature: domain Description: TM_helix Location: 3278 -3416 bp Feature: domain Description: TM_helix Location: 3557-3698 bp Feature: domain Description: TM_helix Location: 3557-3698 bp Feature: domain Description: TM_helix Location: 3845-3986 bp Feature: domain Description: TM_helix Location: 38 45-398 6 bp Feature: domain Description: TM_helix Location: 4133-4274 bp Feature: domain Description: TM_helix Location: 4133-4274 bp Feature: domain Description: TM_helix Location: 4451-4559 bp Feature: domain Description: TM_helix Location: 4451-4559 bp Feature: gene Location: 4998-5438 bp Feature: domain Description: Polyketide_cyc2 Location: 5013-5430 bp Feature: domain Description: Polyketide_cyc2 Location: 5013-5430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YejR (COG0523), RVT-GII, TM_helix (pfam05552), Polyketide_cyc2 (pfam10604), cysS (TIGR00435)

Seq: JAAGOG010000348.1 Nostoc sp. UIC 10630 NODE_722_length_4713_cov_35.2401/0, whole genome shotgun sequence (4713 bp)
Overview 1 RT 1: 169-4536 bp Neighborhood of RT #1 [169, 4550] RVT_N RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII RVT-GII McrA Feature: gene Location: 169-435 bp Feature: gene Location: 631-1221 bp Feature: RT Description: RVT_N Location: 667-907 bp Feature: RT Description: RVT_N Location: 667-9 07 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 64-1207 bp Feature: gene Location: 1661-3499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19 73-2768 bp Feature: domain Description: Intron_maturas2 Location: 2864-3107 bp Feature: domain Description: Intron_maturas2 Location: 2864-3107 bp Feature: domain Description: HNHc Note: nucleases Location: 3275-3452 bp Feature: domain Description: HNHc Note: nucleases Location: 3275-3452 bp Feature: gene Location: 3633-4550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657-3792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657-379 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3798-3963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379 8-39 63 bp Feature: domain Description: McrA Location: 4197-4536 bp Feature: domain Description: McrA Location: 419 7-4536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), McrA (COG4058), RVT_N (pfam13655)