myRT

myRT report for GCA_010811875.1_ASM1081187v1

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Seq: VKHP01000001.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_1_length_158519_cov_7.641434, whole genome shotgun sequence (158519 bp)
Overview 1 RT 1: 121991-126049 bp Neighborhood of RT #1 [121991, 126049] COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 121991-122824 bp Feature: domain Description: COG3436 Location: 122309-122780 bp Feature: domain Description: COG3436 Location: 1 22309-1 22780 bp Feature: gene Location: 122997-123125 bp Feature: gene Location: 123337-124590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123544-124198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23544-1 241 98 bp Feature: domain Description: GIIM Note: maturase Location: 124285-124495 bp Feature: domain Description: GIIM Note: maturase Location: 1 24285-1 24495 bp Feature: gene Location: 124532-125518 bp Feature: domain Description: DDE_Tnp_IS66 Location: 124676-125345 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 24676-1 25345 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 125366-125477 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 25366-1 25477 bp Feature: gene Location: 125612-126049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: VKHP01000021.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_21_length_58607_cov_7.119186, whole genome shotgun sequence (58607 bp)
Overview 1 RT 1: 45305-51992 bp Neighborhood of RT #1 [45305, 52075] COG3293 COG3293 RVT-GII dCache_1 AcyC Peripla_BP_5 Feature: gene Location: 45305-45487 bp Feature: gene Location: 46009-46740 bp Feature: domain Description: COG3293 Location: 46015-46333 bp Feature: domain Description: COG32 93 Location: 46015-46333 bp Feature: domain Description: COG3293 Location: 46372-46690 bp Feature: domain Description: COG32 93 Location: 46372 -46690 bp Feature: gene Location: 47246-48745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47660-48350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47660-48350 bp Feature: gene Location: 48918-50777 bp Feature: domain Description: dCache_1 Location: 48993-49674 bp Feature: domain Description: dCache_1 Location: 48993-49674 bp Feature: domain Description: AcyC Location: 50160-50766 bp Feature: domain Description: AcyC Location: 50160-50766 bp Feature: gene Location: 50774-52075 bp Feature: domain Description: Peripla_BP_5 Location: 50882-51992 bp Feature: domain Description: Peripla_BP_5 Location: 50882 -51992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT-GII, dCache_1 (pfam02743), AcyC (COG2114), Peripla_BP_5 (pfam13433)

Seq: VKHP01000278.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_277_length_11231_cov_8.577089, whole genome shotgun sequence (11231 bp)
Overview 1 RT 1: 5344-8912 bp Neighborhood of RT #1 [5344, 8912] DDE_3 RVT-GII GIIM COG3415 Feature: gene Location: 5344-5664 bp Feature: gene Location: 5810-6373 bp Feature: domain Description: DDE_3 Location: 5888-6278 bp Feature: domain Description: DDE_3 Location: 5888-6278 bp Feature: gene Location: 6384-7643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6600-7254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6600-7254 bp Feature: domain Description: GIIM Note: maturase Location: 7335-7548 bp Feature: domain Description: GIIM Note: maturase Location: 73 3 5-7548 bp Feature: gene Location: 7950-8675 bp Feature: domain Description: COG3415 Location: 7995-8334 bp Feature: domain Description: COG3 415 Location: 7995-83 3 4 bp Feature: gene Location: 8727-8912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), COG3415 (Transposase )

Seq: VKHP01000353.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_352_length_7878_cov_8.923494, whole genome shotgun sequence (7878 bp)
Overview 1 RT 1: 154-3838 bp Neighborhood of RT #1 [154, 3927] RVT-GII GIIM LZ_Tnp_IS66 Hydantoinase_B Feature: gene Location: 154-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 39-1078 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1369 bp Feature: gene Location: 1850-2212 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1979-2210 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1979-2210 bp Feature: gene Location: 2266-3927 bp Feature: domain Description: Hydantoinase_B Location: 2287-3838 bp Feature: domain Description: Hydantoinase_B Location: 2287-3838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), Hydantoinase_B (pfam02538)

Seq: VKHP01000417.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_416_length_3940_cov_7.211382, whole genome shotgun sequence (3940 bp)
Overview 1 RT 1: 508-2995 bp Neighborhood of RT #1 [508, 3006] RVT-GII Beta-lactamase PHA02517 Feature: gene Location: 508-681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 14-643 bp Feature: gene Location: 972-2351 bp Feature: domain Description: Beta-lactamase Location: 1071-1977 bp Feature: domain Description: Beta-lactamase Location: 1071-1977 bp Feature: gene Location: 2725-3006 bp Feature: domain Description: PHA02517 Location: 2737-2995 bp Feature: domain Description: PHA025 17 Location: 2737-2995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, Beta-lactamase (pfam00144)

Seq: VKHP01000449.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_448_length_2576_cov_22.444671, whole genome shotgun sequence (2576 bp)
Overview 1 RT 1: 1-2333 bp Neighborhood of RT #1 [1, 2488] INT_IntI_C Phage_int_SAM_4 RVT-GII GIIM Feature: gene Location: 1-216 bp Feature: domain Description: INT_IntI_C Location: 4-214 bp Feature: domain Description: INT_IntI_C Location: 4-214 bp Feature: gene Location: 210-524 bp Feature: domain Description: Phage_int_SAM_4 Location: 231-462 bp Feature: domain Description: Phage_int_SAM_4 Location: 231-46 2 bp Feature: gene Location: 1103-2488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1439-2057 bp Feature: domain Description: GIIM Note: maturase Location: 2111-2333 bp Feature: domain Description: GIIM Note: maturase Location: 2111-2333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_IntI_C (cd01193), Phage_int_SAM_4 (pfam13495)

Seq: VKHP01000048.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_48_length_44880_cov_8.647487, whole genome shotgun sequence (44880 bp)
Overview 1 RT 1: 10155-15919 bp Neighborhood of RT #1 [10155, 16137] DUF2235 DUF4145 RVT-Retrons Trypsin_2 Acetyltransf_1 DUF4238 Feature: gene Location: 10155-11513 bp Feature: domain Description: DUF2235 Location: 10368-11169 bp Feature: domain Description: DUF2235 Location: 10368-11169 bp Feature: gene Location: 11531-12664 bp Feature: domain Description: DUF4145 Location: 12329-12581 bp Feature: domain Description: DUF4145 Location: 12329-12581 bp Feature: gene Location: 12945-14543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13104-13701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13104-137 01 bp Feature: domain Description: Trypsin_2 Location: 14061-14463 bp Feature: domain Description: Trypsin_2 Location: 14061-14463 bp Feature: gene Location: 14864-15319 bp Feature: domain Description: Acetyltransf_1 Location: 15038-15206 bp Feature: domain Description: Acetyltransf_1 Location: 15038-15206 bp Feature: gene Location: 15418-16137 bp Feature: domain Description: DUF4238 Location: 15424-15919 bp Feature: domain Description: DUF4238 Location: 15424-15919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), DUF4145 (pfam13643), RVT-Retrons, Trypsin_2 (pfam13365), Acetyltransf_1 (pfam00583), DUF4238 (pfam14022)

Seq: VKHP01000644.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_651_length_316_cov_9.349206, whole genome shotgun sequence (316 bp)
Overview 1 RT 1: 3-294 bp Neighborhood of RT #1 [3, 314] RVT-GII Feature: gene Location: 3-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKHP01000703.1 Bradyrhizobium uaiense strain UFLA 03-164 NODE_710_length_255_cov_9.992188, whole genome shotgun sequence (255 bp)
Overview 1 RT 1: 3-252 bp Neighborhood of RT #1 [3, 254] RVT-GII Feature: gene Location: 3-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 -252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII