myRT

myRT report for GCA_010815565.1_ASM1081556v1

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Seq: JAADZA010000042.1 Rhizobium tropici strain A12 plasmid pA12b contig00042, whole genome shotgun sequence (45675 bp)
Overview 1 RT 1: 13457-16966 bp Neighborhood of RT #1 [13457, 16966] HU_IHF RVT_N RVT-GII GIIM COG5489 Feature: gene Location: 13457-13627 bp Feature: domain Description: HU_IHF Location: 13472-13625 bp Feature: domain Description: HU_IHF Location: 1 3472-1 3625 bp Feature: gene Location: 13839-13979 bp Feature: gene Location: 14235-15755 bp Feature: domain Description: RVT_N Location: 14286-14514 bp Feature: domain Description: RVT_N Location: 1 4286-1 451 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14574-15213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4574-1 521 3 bp Feature: domain Description: GIIM Note: maturase Location: 15270-15498 bp Feature: domain Description: GIIM Note: maturase Location: 1 5270-1 5498 bp Feature: gene Location: 16041-16349 bp Feature: domain Description: COG5489 Location: 16044-16347 bp Feature: domain Description: COG5489 Location: 1 6044-1 6347 bp Feature: gene Location: 16490-16966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )

Seq: JAADZA010000048.1 Rhizobium tropici strain A12 plasmid pA12b contig00048, whole genome shotgun sequence (40705 bp)
Overview 1 RT 1: 6572-11400 bp Neighborhood of RT #1 [6572, 11435] HTH_29 rve RVT-UG17 SLATT_5 DUF4263 Feature: gene Location: 6572-7309 bp Feature: gene Location: 7316-8737 bp Feature: domain Description: HTH_29 Location: 7358-7541 bp Feature: domain Description: HTH_2 9 Location: 7358-7541 bp Feature: domain Description: rve Location: 7742-8108 bp Feature: domain Description: rve Location: 7742 -8108 bp Feature: gene Location: 8955-10271 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9183-9765 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9183-9765 bp Feature: gene Location: 10277-10855 bp Feature: domain Description: SLATT_5 Location: 10304-10838 bp Feature: domain Description: SLATT_5 Location: 10304-10838 bp Feature: gene Location: 11148-11435 bp Feature: domain Description: DUF4263 Location: 11154-11400 bp Feature: domain Description: DUF42 63 Location: 11154-11400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), RVT-UG17, SLATT_5 (pfam18160), DUF4263 (pfam14082)

Seq: JAADZA010000078.1 Rhizobium tropici strain A12 plasmid pA12b contig00078, whole genome shotgun sequence (10031 bp)
Overview 1 RT 1: 4969-8982 bp Neighborhood of RT #1 [4969, 9047] RVT-GII GIIM AccC Feature: gene Location: 4969-5259 bp Feature: gene Location: 5498-5773 bp Feature: gene Location: 5990-7240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6206-6851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6206-6851 bp Feature: domain Description: GIIM Note: maturase Location: 6938-7148 bp Feature: domain Description: GIIM Note: maturase Location: 693 8-7148 bp Feature: gene Location: 7292-7525 bp Feature: gene Location: 7758-9047 bp Feature: domain Description: AccC Location: 7776-8982 bp Feature: domain Description: AccC Location: 7776-8982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AccC (COG0439)

Seq: JAADZA010000105.1 Rhizobium tropici strain A12 plasmid pA12b contig00105, whole genome shotgun sequence (2211 bp)
Overview 1 RT 1: 3-2210 bp Neighborhood of RT #1 [3, 2210] DDE_Tnp_1 RVT-GII GIIM Feature: gene Location: 3-221 bp Feature: domain Description: DDE_Tnp_1 Location: 99-219 bp Feature: domain Description: DDE_Tnp_1 Location: 99-219 bp Feature: gene Location: 240-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-1185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528-1185 bp Feature: domain Description: GIIM Note: maturase Location: 1254-1467 bp Feature: domain Description: GIIM Note: maturase Location: 1254 -14 67 bp Feature: gene Location: 1989-2210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)