myRT

myRT report for GCA_010820565.1_ASM1082056v1

Download annotations/find similar RTs

Seq: JAAIJQ010000118.1 Thiorhodococcus minor strain DSM 11518 NODE_118_length_12457_cov_27.0374, whole genome shotgun sequence (12457 bp)
Overview 1 RT 1: 8556-12018 bp Neighborhood of RT #1 [8556, 12080] DUF1835 DUF3658 RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 8556-8882 bp Feature: gene Location: 9218-9997 bp Feature: domain Description: DUF1835 Location: 9245-9587 bp Feature: domain Description: DUF1 835 Location: 9245-9587 bp Feature: domain Description: DUF3658 Location: 9665-9974 bp Feature: domain Description: DUF3658 Location: 9665-9974 bp Feature: gene Location: 10675-11448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10681-11074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0681 -1 1 074 bp Feature: domain Description: GIIM Note: maturase Location: 11143-11371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 43-1 1 371 bp Feature: gene Location: 11445-12080 bp Feature: domain Description: RVT_N Location: 11496-11739 bp Feature: domain Description: RVT_N Location: 1 1 496-1 1 739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11784-12018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 784-1 201 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JAAIJQ010000016.1 Thiorhodococcus minor strain DSM 11518 NODE_16_length_81415_cov_26.487, whole genome shotgun sequence (81415 bp)
Overview 1 RT 1: 1-3616 bp Neighborhood of RT #1 [1, 3720] RVT-GII GIIM Eda nifE Feature: gene Location: 1-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-62 2 bp Feature: domain Description: GIIM Note: maturase Location: 676-907 bp Feature: domain Description: GIIM Note: maturase Location: 676-907 bp Feature: gene Location: 1262-1906 bp Feature: domain Description: Eda Location: 1274-1871 bp Feature: domain Description: Eda Location: 12 74-1871 bp Feature: gene Location: 2257-3720 bp Feature: domain Description: nifE Location: 2263-3616 bp Feature: domain Description: nifE Location: 2 2 63-3616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Eda (COG0800), nifE (TIGR01283)

Seq: JAAIJQ010000176.1 Thiorhodococcus minor strain DSM 11518 NODE_176_length_4008_cov_30.3795, whole genome shotgun sequence (4008 bp)
Overview 1 RT 1: 529-3936 bp Neighborhood of RT #1 [529, 4007] Beta_helix RVT-GII GIIM Feature: gene Location: 529-2328 bp Feature: domain Description: Beta_helix Location: 1033-1489 bp Feature: domain Description: Beta_helix Location: 103 3 -1489 bp Feature: gene Location: 2485-3168 bp Feature: gene Location: 3387-4007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426-3651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 426-3 651 bp Feature: domain Description: GIIM Note: maturase Location: 3729-3936 bp Feature: domain Description: GIIM Note: maturase Location: 3 729-3 93 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta_helix (pfam13229), RVT-GII, GIIM (pfam08388)

Seq: JAAIJQ010000180.1 Thiorhodococcus minor strain DSM 11518 NODE_180_length_3589_cov_31.9294, whole genome shotgun sequence (3589 bp)
Overview 1 RT 1: 672-3582 bp Neighborhood of RT #1 [672, 3587] RVT-GII GIIM RAYT Feature: gene Location: 672-845 bp Feature: gene Location: 1296-1718 bp Feature: gene Location: 1941-3251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223-2901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223-2901 bp Feature: domain Description: GIIM Note: maturase Location: 2973-3189 bp Feature: domain Description: GIIM Note: maturase Location: 2973-3189 bp Feature: gene Location: 3375-3587 bp Feature: domain Description: RAYT Location: 3408-3582 bp Feature: domain Description: RAYT Location: 34 08-3582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)

Seq: JAAIJQ010000194.1 Thiorhodococcus minor strain DSM 11518 NODE_194_length_2966_cov_30.0374, whole genome shotgun sequence (2966 bp)
Overview 1 RT 1: 454-2129 bp Neighborhood of RT #1 [454, 2203] RVT-GII GIIM Feature: gene Location: 454-870 bp Feature: gene Location: 953-2203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 4-1847 bp Feature: domain Description: GIIM Note: maturase Location: 1922-2129 bp Feature: domain Description: GIIM Note: maturase Location: 1922-2129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIJQ010000218.1 Thiorhodococcus minor strain DSM 11518 NODE_218_length_2138_cov_185.549, whole genome shotgun sequence (2138 bp)
Overview 1 RT 1: 3-1561 bp Neighborhood of RT #1 [3, 1764] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 3-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-6 6 6 bp Feature: domain Description: GIIM Note: maturase Location: 747-966 bp Feature: domain Description: GIIM Note: maturase Location: 747-96 6 bp Feature: gene Location: 1060-1764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129-1276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129-1276 bp Feature: domain Description: GIIM Note: maturase Location: 1330-1561 bp Feature: domain Description: GIIM Note: maturase Location: 1330-156 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIJQ010000022.1 Thiorhodococcus minor strain DSM 11518 NODE_22_length_74029_cov_23.7395, whole genome shotgun sequence (74029 bp)
Overview 1 RT 1: 70927-73777 bp Neighborhood of RT #1 [70927, 74004] PRK11148 Rubrerythrin RVT-GII GIIM Feature: gene Location: 70927-71796 bp Feature: domain Description: PRK11148 Location: 70996-71794 bp Feature: domain Description: PRK11148 Location: 7 0996-7 17 94 bp Feature: gene Location: 72302-72721 bp Feature: domain Description: Rubrerythrin Location: 72323-72713 bp Feature: domain Description: Rubrerythrin Location: 7 2323-7 27 13 bp Feature: gene Location: 73276-74004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73345-73492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 3345-7 3492 bp Feature: domain Description: GIIM Note: maturase Location: 73546-73777 bp Feature: domain Description: GIIM Note: maturase Location: 7 3546-7 37 7 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11148 (cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional), Rubrerythrin (pfam02915), RVT-GII, GIIM (pfam08388)

Seq: JAAIJQ010000245.1 Thiorhodococcus minor strain DSM 11518 NODE_245_length_1502_cov_25.2533, whole genome shotgun sequence (1502 bp)
Overview 1 RT 1: 3-1498 bp Neighborhood of RT #1 [3, 1500] DUF820 RVT-GII Feature: gene Location: 3-170 bp Feature: gene Location: 182-883 bp Feature: domain Description: DUF820 Location: 368-842 bp Feature: domain Description: DUF8 20 Location: 368 -8 42 bp Feature: gene Location: 1333-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1336-1498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, RVT-GII

Seq: JAAIJQ010000283.1 Thiorhodococcus minor strain DSM 11518 NODE_283_length_907_cov_258.312, whole genome shotgun sequence (907 bp)
Overview 1 RT 1: 2-764 bp Neighborhood of RT #1 [2, 904] RVT-GII Feature: gene Location: 2-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJQ010000287.1 Thiorhodococcus minor strain DSM 11518 NODE_287_length_886_cov_475.114, whole genome shotgun sequence (886 bp)
Overview 1 RT 1: 1-862 bp Neighborhood of RT #1 [1, 885] RVT-GII Feature: gene Location: 1-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJQ010000299.1 Thiorhodococcus minor strain DSM 11518 NODE_299_length_851_cov_52.3359, whole genome shotgun sequence (851 bp)
Overview 1 RT 1: 3-411 bp Neighborhood of RT #1 [3, 419] RVT_N RVT-GII Feature: gene Location: 3-419 bp Feature: domain Description: RVT_N Location: 54-297 bp Feature: domain Description: RVT_N Location: 54-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAIJQ010000310.1 Thiorhodococcus minor strain DSM 11518 NODE_311_length_748_cov_383.669, whole genome shotgun sequence (748 bp)
Overview 1 RT 1: 1-271 bp Neighborhood of RT #1 [1, 270] RVT-GII Feature: gene Location: 1-270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJQ010000323.1 Thiorhodococcus minor strain DSM 11518 NODE_324_length_618_cov_70.9261, whole genome shotgun sequence (618 bp)
Overview 1 RT 1: 1-478 bp Neighborhood of RT #1 [1, 615] RVT-GII Feature: gene Location: 1-615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJQ010000329.1 Thiorhodococcus minor strain DSM 11518 NODE_330_length_589_cov_196.896, whole genome shotgun sequence (589 bp)
Overview 1 RT 1: 2-587 bp Neighborhood of RT #1 [2, 586] RVT-GII Feature: gene Location: 2-586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86-587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJQ010000003.1 Thiorhodococcus minor strain DSM 11518 NODE_3_length_147756_cov_26.4835, whole genome shotgun sequence (147756 bp)
Overview 1 RT 1: 146572-147689 bp Neighborhood of RT #1 [146572, 147754] COG3905 ParE_toxin RVT-GII GIIM Feature: gene Location: 146572-146850 bp Feature: domain Description: COG3905 Location: 146599-146815 bp Feature: domain Description: COG3905 Location: 146599-146815 bp Feature: gene Location: 146841-147116 bp Feature: domain Description: ParE_toxin Location: 146850-147111 bp Feature: domain Description: ParE_toxin Location: 146850-147111 bp Feature: gene Location: 147257-147754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147272-147407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147272-147407 bp Feature: domain Description: GIIM Note: maturase Location: 147485-147689 bp Feature: domain Description: GIIM Note: maturase Location: 147485-147689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3905 (Predicted transcriptional regulator ), ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388)

Seq: JAAIJQ010000054.1 Thiorhodococcus minor strain DSM 11518 NODE_54_length_38505_cov_23.4409, whole genome shotgun sequence (38505 bp)
Overview 1 RT 1: 36696-38415 bp Neighborhood of RT #1 [36696, 38432] RVT-CRISPR-like DDE_Tnp_IS66 Feature: gene Location: 36696-36926 bp Feature: gene Location: 36941-37111 bp Feature: gene Location: 37187-37558 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37295-37538 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37295-37538 bp Feature: gene Location: 38181-38432 bp Feature: domain Description: DDE_Tnp_IS66 Location: 38190-38415 bp Feature: domain Description: DDE_Tnp_IS66 Location: 38190-38415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, DDE_Tnp_IS66 (pfam03050)

Seq: JAAIJQ010000073.1 Thiorhodococcus minor strain DSM 11518 NODE_73_length_29022_cov_24.892, whole genome shotgun sequence (29022 bp)
Overview 1 RT 1: 12674-17940 bp Neighborhood of RT #1 [12674, 17940] RVT-Retrons LVIVD LVIVD Feature: gene Location: 12674-12832 bp Feature: gene Location: 13031-13834 bp Feature: gene Location: 13910-15277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14411-15023 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14411-15023 bp Feature: gene Location: 15670-17319 bp Feature: domain Description: LVIVD Location: 15832-16018 bp Feature: domain Description: LVIVD Location: 15832-16018 bp Feature: domain Description: LVIVD Location: 17002-17122 bp Feature: domain Description: LVIVD Location: 17 002-17 122 bp Feature: gene Location: 17644-17940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, LVIVD (sd00042)

Seq: JAAIJQ010000093.1 Thiorhodococcus minor strain DSM 11518 NODE_93_length_20421_cov_29.2334, whole genome shotgun sequence (20421 bp)
Overview 1 RT 1: 10352-15656 bp Neighborhood of RT #1 [10352, 15656] RVT-GII GIIM RVT-GII GIIM COG2326 Feature: gene Location: 10352-10675 bp Feature: gene Location: 10802-11032 bp Feature: gene Location: 11854-13155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12139-12778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12139-12778 bp Feature: domain Description: GIIM Note: maturase Location: 12850-13069 bp Feature: domain Description: GIIM Note: maturase Location: 12850-13069 bp Feature: gene Location: 13333-13881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13450-13522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13450-13522 bp Feature: domain Description: GIIM Note: maturase Location: 13576-13741 bp Feature: domain Description: GIIM Note: maturase Location: 13576-13741 bp Feature: gene Location: 14486-15406 bp Feature: domain Description: COG2326 Location: 14567-15311 bp Feature: domain Description: COG2326 Location: 14567-15311 bp Feature: gene Location: 15528-15656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG2326 (Polyphosphate kinase 2, PPK2 family )