myRT

myRT report for GCA_010820705.1_ASM1082070v1

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Seq: SDUV01000060.1 Wolbachia pipientis strain wAdent NODE_1_length_292040_cov_568.727_ID_1, whole genome shotgun sequence (292040 bp)
Overview 1 RT 1: 94297-99281 bp Neighborhood of RT #1 [94297, 99298] apaG RVT-GII RVT-GII group_II_RT_mat pcrA Feature: gene Location: 94297-94527 bp Feature: gene Location: 94617-95018 bp Feature: domain Description: apaG Location: 94635-95001 bp Feature: domain Description: apaG Location: 94635-95001 bp Feature: gene Location: 95249-95731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95252-95375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95252-95375 bp Feature: gene Location: 95881-96210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95887-96199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95887-961 99 bp Feature: gene Location: 96179-96526 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 96266-96491 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 96266-96491 bp Feature: gene Location: 97385-99298 bp Feature: domain Description: pcrA Location: 97397-99281 bp Feature: domain Description: pcrA Location: 97397-99281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT apaG (PRK05461), RVT-GII, group_II_RT_mat (TIGR04416), pcrA (TIGR01073)

Seq: SDUV01000019.1 Wolbachia pipientis strain wAdent NODE_61_length_1707_cov_3460.15_ID_121, whole genome shotgun sequence (1707 bp)
Overview 1 RT 1: 152-1391 bp Neighborhood of RT #1 [152, 1705] RVT-DGRs Peptidase_A17 Feature: gene Location: 152-1705 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 389-776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 389-776 bp Feature: domain Description: Peptidase_A17 Location: 908-1391 bp Feature: domain Description: Peptidase_A17 Location: 908-1391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Peptidase_A17 (pfam05380)

Seq: SDUV01000053.1 Wolbachia pipientis strain wAdent NODE_8_length_34849_cov_44.3728_ID_15, whole genome shotgun sequence (34849 bp)
Overview 1 RT 1: 5424-9513 bp 2 RT 2: 25994-28880 bp Neighborhood of RT #1 [5424, 9513] AIR1 retropepsin_like RT_LTR RVT-UG13 RNase_HI_RT_Ty3 Integrase_H2C2 rve Neighborhood of RT #2 [25994, 28880] Rnase_HI_RT_non_LTR RVT-GII Feature: gene Location: 5424-6473 bp Feature: domain Description: AIR1 Location: 5637-5883 bp Feature: domain Description: AIR1 Location: 563 7-5883 bp Feature: domain Description: retropepsin_like Location: 5883-6165 bp Feature: domain Description: retropepsin_like Location: 5883 -6165 bp Feature: gene Location: 6486-6848 bp Feature: domain Description: RT_LTR Location: 6513-6840 bp Feature: domain Description: RT_LTR Location: 6513 -6840 bp Feature: gene Location: 6891-7997 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 6894-7005 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 6894-7005 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 7329-7683 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 73 29-7683 bp Feature: domain Description: Integrase_H2C2 Location: 7854-7968 bp Feature: domain Description: Integrase_H2C2 Location: 7854-7968 bp Feature: gene Location: 8006-8983 bp Feature: domain Description: rve Location: 8072-8402 bp Feature: domain Description: rve Location: 8072-8402 bp Feature: gene Location: 9361-9513 bp Feature: gene Location: 25994-26248 bp Feature: gene Location: 26439-27146 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 26706-27069 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 26706-27069 bp Feature: gene Location: 27503-28183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27527-28037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27527-2803 7 bp Feature: gene Location: 28197-28577 bp Feature: gene Location: 28707-28880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), retropepsin_like (cd00303), RT_LTR (cd01647), RVT-UG13, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), Rnase_HI_RT_non_LTR (cd09276), RVT-GII