myRT

myRT report for GCA_010894335.1_ASM1089433v1

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Seq: JAAIVH010000001.1 Paenibacillus elgii strain SWL-W8 Contig00001, whole genome shotgun sequence (7877660 bp)
Overview 1 RT 1: 226223-230551 bp 2 RT 2: 362926-369139 bp 3 RT 3: 457571-464401 bp 4 RT 4: 6234939-6242705 bp 5 RT 5: 6783378-6789814 bp 6 RT 6: 7144841-7155128 bp Neighborhood of RT #1 [226223, 230571] GIIM RVT-GII agmatinase speE Neighborhood of RT #2 [362926, 369159] PRK05347 UPF0060 RVT-GII GIIM BaeS Neighborhood of RT #3 [457571, 464490] AraC YdeE RVT-GII GIIM MdlB MdlB Neighborhood of RT #4 [6234939, 6242705] 5TM-5TMR_LYT PRK11360 pbp2_mrdA RVT-GII GIIM Tar Neighborhood of RT #5 [6783378, 6789831] CE2_N FN3 RVT-GII group_II_RT_mat Glyco_hydro_88 PurR Neighborhood of RT #6 [7144841, 7155277] YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 HTH_XRE Feature: gene Location: 226223-226627 bp Feature: gene Location: 226926-227201 bp Feature: domain Description: GIIM Note: maturase Location: 226932-227100 bp Feature: domain Description: GIIM Note: maturase Location: 226932-2271 00 bp Feature: gene Location: 227261-228256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227561-228065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227561 -228065 bp Feature: gene Location: 228854-229723 bp Feature: domain Description: agmatinase Location: 228887-229709 bp Feature: domain Description: agmatinase Location: 228887-229709 bp Feature: gene Location: 229744-230571 bp Feature: domain Description: speE Location: 229756-230551 bp Feature: domain Description: speE Location: 229756-230551 bp Feature: gene Location: 362926-364545 bp Feature: domain Description: PRK05347 Location: 362935-364534 bp Feature: domain Description: PRK05347 Location: 362935-364534 bp Feature: gene Location: 364630-364956 bp Feature: domain Description: UPF0060 Location: 364633-364954 bp Feature: domain Description: UPF0060 Location: 364633-364954 bp Feature: gene Location: 365140-366183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365191-365824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651 91 -365824 bp Feature: domain Description: GIIM Note: maturase Location: 365956-366121 bp Feature: domain Description: GIIM Note: maturase Location: 365956-3661 21 bp Feature: gene Location: 366200-366373 bp Feature: gene Location: 367288-369159 bp Feature: domain Description: BaeS Location: 368197-369139 bp Feature: domain Description: BaeS Location: 3681 97-3691 39 bp Feature: gene Location: 457571-458443 bp Feature: domain Description: AraC Location: 457598-457889 bp Feature: domain Description: AraC Location: 457598-457889 bp Feature: domain Description: YdeE Location: 457955-458426 bp Feature: domain Description: YdeE Location: 457955-458426 bp Feature: gene Location: 458553-458720 bp Feature: gene Location: 458929-460221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459229-459862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459229-459862 bp Feature: domain Description: GIIM Note: maturase Location: 459994-460159 bp Feature: domain Description: GIIM Note: maturase Location: 459994-4601 59 bp Feature: gene Location: 460811-462697 bp Feature: domain Description: MdlB Location: 460922-462668 bp Feature: domain Description: MdlB Location: 460922-462668 bp Feature: gene Location: 462694-464490 bp Feature: domain Description: MdlB Location: 462703-464401 bp Feature: domain Description: MdlB Location: 462703-464401 bp Feature: gene Location: 6234939-6236228 bp Feature: domain Description: 5TM-5TMR_LYT Location: 6235050-6235422 bp Feature: domain Description: 5TM-5TMR_LYT Location: 6235050-6235422 bp Feature: domain Description: PRK11360 Location: 6235497-6236211 bp Feature: domain Description: PRK1 1 360 Location: 6235497-623621 1 bp Feature: gene Location: 6236307-6238112 bp Feature: domain Description: pbp2_mrdA Location: 6236340-6238092 bp Feature: domain Description: pbp2_mrdA Location: 6236340-6238092 bp Feature: gene Location: 6238281-6239504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6238512-6239145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623851 2-62391 45 bp Feature: domain Description: GIIM Note: maturase Location: 6239277-6239442 bp Feature: domain Description: GIIM Note: maturase Location: 6239277-6239442 bp Feature: gene Location: 6240147-6242324 bp Feature: domain Description: Tar Location: 6241074-6242322 bp Feature: domain Description: Tar Location: 6241 074-6242322 bp Feature: gene Location: 6242475-6242705 bp Feature: gene Location: 6783378-6783725 bp Feature: gene Location: 6784073-6785083 bp Feature: domain Description: CE2_N Location: 6784304-6784553 bp Feature: domain Description: CE2_N Location: 6784304-6784553 bp Feature: domain Description: FN3 Location: 6784595-6784787 bp Feature: domain Description: FN3 Location: 6784595-6784787 bp Feature: gene Location: 6785683-6786972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6785983-6786487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6785983-6786487 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6786652-6786892 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6786652-6786892 bp Feature: gene Location: 6787568-6788701 bp Feature: domain Description: Glyco_hydro_88 Location: 6787634-6788669 bp Feature: domain Description: Glyco_hydro_88 Location: 6787634-6788669 bp Feature: gene Location: 6788767-6789831 bp Feature: domain Description: PurR Location: 6788791-6789814 bp Feature: domain Description: PurR Location: 6788791 -678981 4 bp Feature: gene Location: 7144841-7145281 bp Feature: gene Location: 7145320-7150893 bp Feature: domain Description: YtxK Location: 7147126-7147852 bp Feature: domain Description: YtxK Location: 71 471 26-71 47852 bp Feature: domain Description: COG4646 Location: 7147948-7150579 bp Feature: domain Description: COG4646 Location: 71 47948-71 50579 bp Feature: gene Location: 7151473-7153299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7151749-7152580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 51 749-71 52580 bp Feature: domain Description: Intron_maturas2 Location: 7152634-7152919 bp Feature: domain Description: Intron_maturas2 Location: 71 52634-71 5291 9 bp Feature: domain Description: HNHc Note: nucleases Location: 7153120-7153270 bp Feature: domain Description: HNHc Note: nucleases Location: 71 531 20-71 53270 bp Feature: gene Location: 7153333-7154412 bp Feature: domain Description: KOG1000 Location: 7153453-7153687 bp Feature: domain Description: KOG1 000 Location: 71 53453-71 53687 bp Feature: gene Location: 7154861-7155277 bp Feature: domain Description: HTH_XRE Location: 7154963-7155128 bp Feature: domain Description: HTH_XRE Location: 71 54963-71 551 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, agmatinase (TIGR01230), speE (TIGR00417), PRK05347 (glutaminyl-tRNA synthetase; Provisional), UPF0060 (pfam02694), BaeS (COG0642), AraC (COG2207), YdeE (COG3708), MdlB (COG1132)
5TM-5TMR_LYT (pfam07694), PRK11360 (two-component system sensor histidine kinase AtoS), pbp2_mrdA (TIGR03423), Tar (COG0840), CE2_N (pfam17996), FN3 (smart00060), group_II_RT_mat (TIGR04416), Glyco_hydro_88 (pfam07470), PurR (COG1609), YtxK (COG0827)
COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), HTH_XRE (smart00530)