myRT

myRT report for GCA_010894395.1_ASM1089439v1

Download annotations/find similar RTs

Seq: JAAIUX010000023.1 Vibrio diabolicus strain R-31 Scaffold19_1, whole genome shotgun sequence (25820 bp)
Overview 1 RT 1: 2685-12243 bp Neighborhood of RT #1 [2685, 12272] HTH_17 COG5545 RVT-UG8 RVT-UG3 SLATT_5 RVT-UG25 StbD ParE_toxin Feature: gene Location: 2685-2927 bp Feature: domain Description: HTH_17 Location: 2715-2880 bp Feature: domain Description: HTH_1 7 Location: 271 5-2880 bp Feature: gene Location: 2920-4170 bp Feature: domain Description: COG5545 Location: 2971-3976 bp Feature: domain Description: COG5545 Location: 2971 -3976 bp Feature: gene Location: 4609-6573 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5122-5569 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51 22-5569 bp Feature: gene Location: 6570-7811 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6858-7320 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 6858-7320 bp Feature: gene Location: 7813-8418 bp Feature: domain Description: SLATT_5 Location: 7825-8392 bp Feature: domain Description: SLATT_5 Location: 7825-8392 bp Feature: gene Location: 8608-9543 bp Feature: gene Location: 9546-11270 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 9963-10362 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 9963-1 0362 bp Feature: gene Location: 11725-11982 bp Feature: domain Description: StbD Location: 11728-11962 bp Feature: domain Description: StbD Location: 1 1 728-1 1 962 bp Feature: gene Location: 11970-12272 bp Feature: domain Description: ParE_toxin Location: 11982-12243 bp Feature: domain Description: ParE_toxin Location: 1 1 982-1 2243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG5545 (Predicted P-loop ATPase and inactivated derivatives ), RVT-UG8, RVT-UG3, SLATT_5 (pfam18160), RVT-UG25, StbD (COG2161), ParE_toxin (pfam05016)

Seq: JAAIUX010000001.1 Vibrio diabolicus strain R-31 Scaffold1_1, whole genome shotgun sequence (1363970 bp)
Overview 1 RT 1: 1077527-1086592 bp Neighborhood of RT #1 [1077527, 1086786] COG5635 RVT-UG1 COG5340 Phage_int_SAM_5 INT_ICEBs1_C_like Feature: gene Location: 1077527-1080382 bp Feature: domain Description: COG5635 Location: 1078301-1079378 bp Feature: domain Description: COG5635 Location: 1078301-1079378 bp Feature: gene Location: 1080489-1080929 bp Feature: gene Location: 1080922-1084653 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1081543-1082032 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1081543-1082 032 bp Feature: gene Location: 1084782-1085306 bp Feature: domain Description: COG5340 Location: 1084806-1085133 bp Feature: domain Description: COG5340 Location: 1084806-1085133 bp Feature: gene Location: 1085695-1086786 bp Feature: domain Description: Phage_int_SAM_5 Location: 1085878-1085977 bp Feature: domain Description: Phage_int_SAM_5 Location: 1085878-1085977 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1086067-1086592 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1086067-1086592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), RVT-UG1, COG5340 (Transcriptional regulator, predicted component of viral defense system ), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189)

Seq: JAAIUX010000008.1 Vibrio diabolicus strain R-31 Scaffold5_1, whole genome shotgun sequence (249875 bp)
Overview 1 RT 1: 3-4018 bp Neighborhood of RT #1 [3, 4018] CSP_CDS RVT-Retrons Feature: gene Location: 3-161 bp Feature: gene Location: 265-498 bp Feature: domain Description: CSP_CDS Location: 295-472 bp Feature: domain Description: CSP_CDS Location: 295-472 bp Feature: gene Location: 491-1657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 632-1187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63 2-1187 bp Feature: gene Location: 1692-1880 bp Feature: gene Location: 2429-4018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CSP_CDS (cd04458), RVT-Retrons