myRT

myRT report for GCA_010894435.1_ASM1089443v1

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Seq: JAAIXZ010000011.1 Pyxidicoccus sp. AB060A NODE_11_length_407336_cov_21.3191, whole genome shotgun sequence (407336 bp)
Overview 1 RT 1: 401649-406646 bp Neighborhood of RT #1 [401649, 406759] ligand_gated_channel RVT-GII GIIM Feature: gene Location: 401649-403826 bp Feature: domain Description: ligand_gated_channel Location: 401805-403815 bp Feature: domain Description: ligand_gated_channel Location: 401 805-40381 5 bp Feature: gene Location: 403873-404991 bp Feature: gene Location: 405449-406759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405734-406352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405734-406352 bp Feature: domain Description: GIIM Note: maturase Location: 406424-406646 bp Feature: domain Description: GIIM Note: maturase Location: 406424-406646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligand_gated_channel (cd01347), RVT-GII, GIIM (pfam08388)

Seq: JAAIXZ010000001.1 Pyxidicoccus sp. AB060A NODE_1_length_1648355_cov_23.8972, whole genome shotgun sequence (1648355 bp)
Overview 1 RT 1: 1299493-1310217 bp Neighborhood of RT #1 [1299493, 1310228] HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Aldo_ket_red RVT-Retrons rpt_mate_G_obs LRR_RI ATS1 ATS1 RCC1 ATS1 ATS1 RCC1 RCC1 RCC1 RCC1 ATS1 ATS1 RCC1 Feature: gene Location: 1299493-1300140 bp Feature: gene Location: 1300178-1303237 bp Feature: domain Description: HEAT_2 Location: 1300211-1300442 bp Feature: domain Description: HEAT_2 Location: 13002 11-1300442 bp Feature: domain Description: HEAT_2 Location: 1300478-1300721 bp Feature: domain Description: HEAT_2 Location: 1300478-130072 1 bp Feature: domain Description: HEAT_2 Location: 1301162-1301342 bp Feature: domain Description: HEAT_2 Location: 1301162 -1301342 bp Feature: domain Description: HEAT_2 Location: 1301480-1301684 bp Feature: domain Description: HEAT_2 Location: 1301480-1301684 bp Feature: domain Description: HEAT_2 Location: 1301894-1302119 bp Feature: domain Description: HEAT_2 Location: 1301894-1302 119 bp Feature: domain Description: Aldo_ket_red Location: 1302362-1303094 bp Feature: domain Description: Aldo_ket_red Location: 1302 362 -1303094 bp Feature: gene Location: 1303447-1304862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1304041-1304635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1304041-1304635 bp Feature: gene Location: 1304859-1305827 bp Feature: domain Description: rpt_mate_G_obs Location: 1304874-1304988 bp Feature: domain Description: rpt_mate_G_obs Location: 1304874-1304988 bp Feature: domain Description: LRR_RI Location: 1305129-1305762 bp Feature: domain Description: LRR_RI Location: 130512 9-1305762 bp Feature: gene Location: 1305852-1310228 bp Feature: domain Description: ATS1 Location: 1306029-1306422 bp Feature: domain Description: ATS1 Location: 130602 9-130642 2 bp Feature: domain Description: ATS1 Location: 1306443-1307022 bp Feature: domain Description: ATS1 Location: 1306443-130702 2 bp Feature: domain Description: RCC1 Location: 1307121-1307262 bp Feature: domain Description: RCC1 Location: 130712 1-13072 62 bp Feature: domain Description: ATS1 Location: 1307379-1307949 bp Feature: domain Description: ATS1 Location: 1307379-1307949 bp Feature: domain Description: ATS1 Location: 1307985-1308393 bp Feature: domain Description: ATS1 Location: 1307985-1308393 bp Feature: domain Description: RCC1 Location: 1308474-1308606 bp Feature: domain Description: RCC1 Location: 1308474-1308606 bp Feature: domain Description: RCC1 Location: 1308624-1308765 bp Feature: domain Description: RCC1 Location: 130862 4-1308765 bp Feature: domain Description: RCC1 Location: 1308774-1308915 bp Feature: domain Description: RCC1 Location: 1308774-1308915 bp Feature: domain Description: RCC1 Location: 1308924-1309065 bp Feature: domain Description: RCC1 Location: 130892 4-1309065 bp Feature: domain Description: ATS1 Location: 1309185-1309440 bp Feature: domain Description: ATS1 Location: 1309185-1309440 bp Feature: domain Description: ATS1 Location: 1309452-1310055 bp Feature: domain Description: ATS1 Location: 1309452 -1310055 bp Feature: domain Description: RCC1 Location: 1310133-1310217 bp Feature: domain Description: RCC1 Location: 1310133-13102 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), Aldo_ket_red (pfam00248), RVT-Retrons, rpt_mate_G_obs (TIGR02996), LRR_RI (smart00368), ATS1 (COG5184), RCC1 (pfam00415)

Seq: JAAIXZ010000024.1 Pyxidicoccus sp. AB060A NODE_24_length_194585_cov_19.5117, whole genome shotgun sequence (194585 bp)
Overview 1 RT 1: 181076-188026 bp Neighborhood of RT #1 [181076, 188067] RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RVT-GII TnpB_IS66 Feature: gene Location: 181076-181252 bp Feature: gene Location: 181881-184076 bp Feature: domain Description: RCC1 Location: 182070-182208 bp Feature: domain Description: RCC1 Location: 182070-182208 bp Feature: domain Description: RCC1 Location: 182220-182361 bp Feature: domain Description: RCC1 Location: 182220-1823 61 bp Feature: domain Description: RCC1 Location: 182370-182511 bp Feature: domain Description: RCC1 Location: 1823 70-182511 bp Feature: domain Description: RCC1 Location: 182520-182661 bp Feature: domain Description: RCC1 Location: 182520-182661 bp Feature: domain Description: RCC1 Location: 182670-182811 bp Feature: domain Description: RCC1 Location: 182670-182811 bp Feature: domain Description: RCC1 Location: 182820-182958 bp Feature: domain Description: RCC1 Location: 182820-182958 bp Feature: domain Description: RCC1 Location: 182967-183102 bp Feature: domain Description: RCC1 Location: 182967-183 102 bp Feature: domain Description: RCC1 Location: 183231-183372 bp Feature: domain Description: RCC1 Location: 183 23 1-183 3 72 bp Feature: domain Description: RCC1 Location: 183381-183519 bp Feature: domain Description: RCC1 Location: 183 3 81-183 519 bp Feature: domain Description: RCC1 Location: 183528-183669 bp Feature: domain Description: RCC1 Location: 183 528-183 669 bp Feature: domain Description: RCC1 Location: 183678-183819 bp Feature: domain Description: RCC1 Location: 183 678-183 819 bp Feature: domain Description: RCC1 Location: 183846-183915 bp Feature: domain Description: RCC1 Location: 183 846-183 915 bp Feature: gene Location: 185458-187281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186199-186886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186199-186886 bp Feature: gene Location: 187361-187708 bp Feature: gene Location: 187702-188067 bp Feature: domain Description: TnpB_IS66 Location: 187729-188026 bp Feature: domain Description: TnpB_IS66 Location: 187729-188026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RCC1 (pfam00415), RVT-GII, TnpB_IS66 (pfam05717)

Seq: JAAIXZ010000003.1 Pyxidicoccus sp. AB060A NODE_3_length_802908_cov_27.0041, whole genome shotgun sequence (802908 bp)
Overview 1 RT 1: 218641-231163 bp Neighborhood of RT #1 [218641, 231519] BetA BetA BetA DAP2 RVT-Retrons KOG0266 KOG0308 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 218641-220287 bp Feature: domain Description: BetA Location: 218773-219274 bp Feature: domain Description: BetA Location: 218773-219274 bp Feature: domain Description: BetA Location: 219388-219736 bp Feature: domain Description: BetA Location: 219388-219736 bp Feature: domain Description: BetA Location: 219853-220264 bp Feature: domain Description: BetA Location: 219853-220264 bp Feature: gene Location: 220286-221227 bp Feature: domain Description: DAP2 Location: 220406-221132 bp Feature: domain Description: DAP2 Location: 2204 06-221132 bp Feature: gene Location: 221285-222736 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 221843-222485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22184 3-2224 85 bp Feature: gene Location: 223139-224989 bp Feature: gene Location: 224986-231519 bp Feature: domain Description: KOG0266 Location: 225172-225595 bp Feature: domain Description: KOG0266 Location: 225172-225595 bp Feature: domain Description: KOG0308 Location: 225718-225901 bp Feature: domain Description: KOG0308 Location: 225718-225901 bp Feature: domain Description: HEAT_2 Location: 226066-226276 bp Feature: domain Description: HEAT_2 Location: 226066-226276 bp Feature: domain Description: HEAT_2 Location: 226828-227077 bp Feature: domain Description: HEAT_2 Location: 226828-227077 bp Feature: domain Description: HEAT_2 Location: 227119-227287 bp Feature: domain Description: HEAT_2 Location: 227119-227287 bp Feature: domain Description: HEAT_2 Location: 227314-227548 bp Feature: domain Description: HEAT_2 Location: 227314 -22754 8 bp Feature: domain Description: HEAT_2 Location: 227986-228139 bp Feature: domain Description: HEAT_2 Location: 227986-228139 bp Feature: domain Description: HEAT_2 Location: 228772-228958 bp Feature: domain Description: HEAT_2 Location: 228772-228958 bp Feature: domain Description: HEAT_2 Location: 229003-229210 bp Feature: domain Description: HEAT_2 Location: 229003-229210 bp Feature: domain Description: HEAT_2 Location: 229378-229609 bp Feature: domain Description: HEAT_2 Location: 229378-229609 bp Feature: domain Description: HEAT_2 Location: 230203-230437 bp Feature: domain Description: HEAT_2 Location: 230203-2304 37 bp Feature: domain Description: HEAT_2 Location: 230941-231163 bp Feature: domain Description: HEAT_2 Location: 23094 1-231163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, KOG0266 (KOG0266, WD40 repeat-containing protein ), KOG0308 (KOG0308, Conserved WD40 repeat-containing protein ), HEAT_2 (pfam13646)