myRT

myRT report for GCA_010894475.1_ASM1089447v1

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Seq: JAAIYB010000034.1 Myxococcus sp. AM301 NODE_34_length_34632_cov_13.6016, whole genome shotgun sequence (34632 bp)
Overview 1 RT 1: 16034-28806 bp Neighborhood of RT #1 [16034, 28823] KOG0266 KOG0308 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 16034-22570 bp Feature: domain Description: KOG0266 Location: 16091-16643 bp Feature: domain Description: KOG0266 Location: 1 6091 -1 6643 bp Feature: domain Description: KOG0308 Location: 16766-16952 bp Feature: domain Description: KOG0308 Location: 1 6766-1 6952 bp Feature: domain Description: HEAT_2 Location: 17111-17294 bp Feature: domain Description: HEAT_2 Location: 1 71 1 1 -1 7294 bp Feature: domain Description: HEAT_2 Location: 17876-18125 bp Feature: domain Description: HEAT_2 Location: 1 7876-1 81 25 bp Feature: domain Description: HEAT_2 Location: 18167-18341 bp Feature: domain Description: HEAT_2 Location: 1 81 67-1 8341 bp Feature: domain Description: HEAT_2 Location: 18365-18596 bp Feature: domain Description: HEAT_2 Location: 1 8365-1 8596 bp Feature: domain Description: HEAT_2 Location: 19040-19214 bp Feature: domain Description: HEAT_2 Location: 1 9040-1 921 4 bp Feature: domain Description: HEAT_2 Location: 19295-19457 bp Feature: domain Description: HEAT_2 Location: 1 9295-1 9457 bp Feature: domain Description: HEAT_2 Location: 19847-20015 bp Feature: domain Description: HEAT_2 Location: 1 9847-2001 5 bp Feature: domain Description: HEAT_2 Location: 20051-20261 bp Feature: domain Description: HEAT_2 Location: 20051 -20261 bp Feature: domain Description: HEAT_2 Location: 20312-20567 bp Feature: domain Description: HEAT_2 Location: 2031 2-20567 bp Feature: domain Description: HEAT_2 Location: 21263-21485 bp Feature: domain Description: HEAT_2 Location: 21 263-21 485 bp Feature: domain Description: HEAT_2 Location: 21980-22217 bp Feature: domain Description: HEAT_2 Location: 21 980-2221 7 bp Feature: domain Description: HEAT_2 Location: 22343-22481 bp Feature: domain Description: HEAT_2 Location: 22343-22481 bp Feature: gene Location: 22567-24420 bp Feature: gene Location: 24821-26278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25379-26021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25379-26021 bp Feature: gene Location: 26282-27148 bp Feature: domain Description: DAP2 Location: 26408-27128 bp Feature: domain Description: DAP2 Location: 26408-271 28 bp Feature: gene Location: 27300-28823 bp Feature: domain Description: BetA Location: 27315-27810 bp Feature: domain Description: BetA Location: 2731 5-2781 0 bp Feature: domain Description: BetA Location: 27951-28224 bp Feature: domain Description: BetA Location: 27951 -28224 bp Feature: domain Description: BetA Location: 28389-28806 bp Feature: domain Description: BetA Location: 28389-28806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0266 (KOG0266, WD40 repeat-containing protein ), KOG0308 (KOG0308, Conserved WD40 repeat-containing protein ), HEAT_2 (pfam13646), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)

Seq: JAAIYB010000355.1 Myxococcus sp. AM301 NODE_355_length_8944_cov_8.76557, whole genome shotgun sequence (8944 bp)
Overview 1 RT 1: 245-4440 bp Neighborhood of RT #1 [245, 4440] Tra5 RVT-GII CARDB Feature: gene Location: 245-982 bp Feature: domain Description: Tra5 Location: 320-824 bp Feature: domain Description: Tra5 Location: 32 0-82 4 bp Feature: gene Location: 1689-2948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2 580 bp Feature: gene Location: 3192-4124 bp Feature: domain Description: CARDB Location: 3891-3969 bp Feature: domain Description: CARDB Location: 3891-3969 bp Feature: gene Location: 4300-4440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801)

Seq: JAAIYB010000035.1 Myxococcus sp. AM301 NODE_35_length_33720_cov_10.9812, whole genome shotgun sequence (33720 bp)
Overview 1 RT 1: 19702-26627 bp Neighborhood of RT #1 [19702, 26812] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 19702-21612 bp Feature: gene Location: 21609-23207 bp Feature: gene Location: 23386-24669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23851-24454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 851-24454 bp Feature: gene Location: 24678-25097 bp Feature: domain Description: COG3791 Location: 24705-25059 bp Feature: domain Description: COG3 791 Location: 24705-25059 bp Feature: gene Location: 25478-26812 bp Feature: domain Description: EpmB Location: 25541-25724 bp Feature: domain Description: EpmB Location: 25541-25724 bp Feature: domain Description: EpmB Location: 25871-26627 bp Feature: domain Description: EpmB Location: 25871-26627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: JAAIYB010000400.1 Myxococcus sp. AM301 NODE_400_length_7800_cov_3.05487, whole genome shotgun sequence (7800 bp)
Overview 1 RT 1: 3748-7348 bp Neighborhood of RT #1 [3748, 7348] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 Feature: gene Location: 3748-4182 bp Feature: gene Location: 4337-5119 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4853-4952 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 853-4 952 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4973-5081 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 973-5081 bp Feature: gene Location: 5103-6128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5388-6006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5388-6006 bp Feature: gene Location: 6356-7189 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6365-6974 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6365-6974 bp Feature: gene Location: 7199-7348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: JAAIYB010000505.1 Myxococcus sp. AM301 NODE_505_length_5726_cov_10.6031, whole genome shotgun sequence (5726 bp)
Overview 1 RT 1: 252-5628 bp Neighborhood of RT #1 [252, 5628] COG1579 RNase_HI_like RVT-Retrons COG4941 Feature: gene Location: 252-983 bp Feature: domain Description: COG1579 Location: 255-954 bp Feature: domain Description: COG15 79 Location: 25 5 -95 4 bp Feature: gene Location: 1002-1640 bp Feature: domain Description: RNase_HI_like Location: 1251-1629 bp Feature: domain Description: RNase_HI_like Location: 125 1-1629 bp Feature: gene Location: 1680-3008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2124-2778 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2124-2778 bp Feature: gene Location: 3292-4575 bp Feature: domain Description: COG4941 Location: 3316-4552 bp Feature: domain Description: COG4941 Location: 3316-45 5 2 bp Feature: gene Location: 5068-5628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), RVT-Retrons, COG1579 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain )

Seq: JAAIYB010000750.1 Myxococcus sp. AM301 NODE_750_length_2246_cov_1.84899, whole genome shotgun sequence (2246 bp)
Overview 1 RT 1: 1-2242 bp Neighborhood of RT #1 [1, 2244] FixC RVT-Retrons Feature: gene Location: 1-2244 bp Feature: domain Description: FixC Location: 31-121 bp Feature: domain Description: FixC Location: 31-121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1999-2242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1999-2242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FixC (COG0644), RVT-Retrons