myRT

myRT report for GCA_010906925.1_ASM1090692v1

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Seq: VTVE01000001.1 Pseudobutyrivibrio xylanivorans strain MZ8 NODE_1_length_1404277_cov_48.6399, whole genome shotgun sequence (1404277 bp)
Overview 1 RT 1: 212582-218609 bp Neighborhood of RT #1 [212582, 218794] YbjD YbjD RVT-Retrons TPR RCC1_2 RCC1_2 RCC1_2 RCC1_2 Feature: gene Location: 212582-213211 bp Feature: gene Location: 213298-215250 bp Feature: domain Description: YbjD Location: 213301-213466 bp Feature: domain Description: YbjD Location: 21 3301 -21 3466 bp Feature: domain Description: YbjD Location: 213823-214639 bp Feature: domain Description: YbjD Location: 21 3823-21 4639 bp Feature: gene Location: 215488-216543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 215635-216205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 5635-21 6205 bp Feature: gene Location: 216702-217268 bp Feature: gene Location: 217274-218794 bp Feature: domain Description: TPR Location: 217376-217868 bp Feature: domain Description: TPR Location: 21 7376-21 7868 bp Feature: domain Description: RCC1_2 Location: 218138-218192 bp Feature: domain Description: RCC1 _2 Location: 21 81 38-21 81 92 bp Feature: domain Description: RCC1_2 Location: 218255-218315 bp Feature: domain Description: RCC1 _2 Location: 21 8255-21 831 5 bp Feature: domain Description: RCC1_2 Location: 218438-218507 bp Feature: domain Description: RCC1 _2 Location: 21 8438-21 8507 bp Feature: domain Description: RCC1_2 Location: 218534-218609 bp Feature: domain Description: RCC1 _2 Location: 21 8534-21 8609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), RVT-Retrons, TPR (smart00028), RCC1_2 (pfam13540)

Seq: VTVE01000003.1 Pseudobutyrivibrio xylanivorans strain MZ8 NODE_3_length_457661_cov_55.5208, whole genome shotgun sequence (457661 bp)
Overview 1 RT 1: 285828-291257 bp Neighborhood of RT #1 [285828, 291257] NolL RVT-GII GIIM CDP_GD_SDR_e Feature: gene Location: 285828-286859 bp Feature: domain Description: NolL Location: 285852-286788 bp Feature: domain Description: NolL Location: 2 85852 -2 86788 bp Feature: gene Location: 287496-287639 bp Feature: gene Location: 287626-288909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287836-288451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 87836-2 88451 bp Feature: domain Description: GIIM Note: maturase Location: 288511-288733 bp Feature: domain Description: GIIM Note: maturase Location: 2 88511-2 88733 bp Feature: gene Location: 289120-290250 bp Feature: domain Description: CDP_GD_SDR_e Location: 289135-290197 bp Feature: domain Description: CDP_GD_SDR_e Location: 2 89135-2 90197 bp Feature: gene Location: 290436-291257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NolL (COG3594), RVT-GII, GIIM (pfam08388), CDP_GD_SDR_e (cd05252)