myRT

myRT report for GCA_010915725.1_ASM1091572v1

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Seq: JAAIJR010000273.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_273_length_2739_cov_27.5556, whole genome shotgun sequence (2739 bp)
Overview 1 RT 1: 69-1404 bp Neighborhood of RT #1 [69, 1685] RVT-GII clan_AA_DTGF RAYT Feature: gene Location: 69-281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-228 bp Feature: gene Location: 300-680 bp Feature: domain Description: clan_AA_DTGF Location: 315-633 bp Feature: domain Description: clan_AA_DTGF Location: 31 5-633 bp Feature: gene Location: 987-1685 bp Feature: domain Description: RAYT Location: 990-1404 bp Feature: domain Description: RAYT Location: 990-1 404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, clan_AA_DTGF, RAYT (COG1943)

Seq: JAAIJR010000282.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_282_length_2492_cov_56.8286, whole genome shotgun sequence (2492 bp)
Overview 1 RT 1: 56-1748 bp Neighborhood of RT #1 [56, 1768] RVT-GII HigB_toxin Feature: gene Location: 56-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-575 bp Feature: gene Location: 1249-1473 bp Feature: gene Location: 1541-1768 bp Feature: domain Description: HigB_toxin Location: 1547-1748 bp Feature: domain Description: HigB_toxin Location: 1547-1748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HigB_toxin (pfam09907)

Seq: JAAIJR010000299.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_299_length_1962_cov_39.8504, whole genome shotgun sequence (1962 bp)
Overview 1 RT 1: 99-1941 bp Neighborhood of RT #1 [99, 1961] RVT-GII DDE_Tnp_1 RVT-GII Feature: gene Location: 99-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-297 bp Feature: gene Location: 400-1710 bp Feature: domain Description: DDE_Tnp_1 Location: 724-1423 bp Feature: domain Description: DDE_Tnp_1 Location: 724-1423 bp Feature: gene Location: 1815-1961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1818-1941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1818-1941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JAAIJR010000324.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_324_length_1452_cov_52.4815, whole genome shotgun sequence (1452 bp)
Overview 1 RT 1: 2-1436 bp Neighborhood of RT #1 [2, 1450] RVT-GII PDDEXK_2 Feature: gene Location: 2-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-4 19 bp Feature: gene Location: 608-874 bp Feature: gene Location: 884-1450 bp Feature: domain Description: PDDEXK_2 Location: 905-1436 bp Feature: domain Description: PDDEXK_2 Location: 905-14 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PDDEXK_2 (pfam12784)

Seq: JAAIJR010000332.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_332_length_1298_cov_27.2596, whole genome shotgun sequence (1298 bp)
Overview 1 RT 1: 37-694 bp Neighborhood of RT #1 [37, 762] RVT-GII Feature: gene Location: 37-762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJR010000376.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_376_length_843_cov_154.403, whole genome shotgun sequence (843 bp)
Overview 1 RT 1: 92-485 bp Neighborhood of RT #1 [92, 841] RVT-GII Feature: gene Location: 92-841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101-485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJR010000407.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_407_length_695_cov_164.375, whole genome shotgun sequence (695 bp)
Overview 1 RT 1: 256-694 bp Neighborhood of RT #1 [256, 693] RVT-GII Feature: gene Location: 256-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIJR010000052.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_52_length_35855_cov_28.4364, whole genome shotgun sequence (35855 bp)
Overview 1 RT 1: 3648-7794 bp Neighborhood of RT #1 [3648, 7934] PRK10696 YeaD2 RVT-DGRs MutS_I PIN_MtVapC20-like DUF104 Feature: gene Location: 3648-4352 bp Feature: domain Description: PRK10696 Location: 3651-4296 bp Feature: domain Description: PRK10696 Location: 3651-4296 bp Feature: gene Location: 4349-5695 bp Feature: domain Description: YeaD2 Location: 4424-5672 bp Feature: domain Description: YeaD2 Location: 4424-5672 bp Feature: gene Location: 6001-7191 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6004-6643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6004-6643 bp Feature: domain Description: MutS_I Location: 6979-7186 bp Feature: domain Description: MutS_I Location: 6979-718 6 bp Feature: gene Location: 7261-7674 bp Feature: domain Description: PIN_MtVapC20-like Location: 7276-7657 bp Feature: domain Description: PIN_MtVapC20-like Location: 7276-7657 bp Feature: gene Location: 7674-7934 bp Feature: domain Description: DUF104 Location: 7677-7794 bp Feature: domain Description: DUF104 Location: 7677-7794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10696 (tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional), YeaD2 (COG1721), RVT-DGRs, MutS_I (pfam01624), PIN_MtVapC20-like (cd18680), DUF104 (pfam01954)

Seq: JAAIJR010000065.1 Thiorhodococcus mannitoliphagus strain DSM 18266 NODE_65_length_31243_cov_26.364, whole genome shotgun sequence (31243 bp)
Overview 1 RT 1: 1083-4643 bp Neighborhood of RT #1 [1083, 4666] RVT-GII GIIM G1P_cyt_trans CDP_4_6_dhtase Feature: gene Location: 1083-1265 bp Feature: gene Location: 1475-1915 bp Feature: gene Location: 1914-2576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028-2229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028-2229 bp Feature: domain Description: GIIM Note: maturase Location: 2319-2511 bp Feature: domain Description: GIIM Note: maturase Location: 2319 -2511 bp Feature: gene Location: 2826-3599 bp Feature: domain Description: G1P_cyt_trans Location: 2832-3594 bp Feature: domain Description: G1P_cyt_trans Location: 2832-359 4 bp Feature: gene Location: 3560-4666 bp Feature: domain Description: CDP_4_6_dhtase Location: 3611-4643 bp Feature: domain Description: CDP_4_6_dhtase Location: 3611-4643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), G1P_cyt_trans (TIGR02623), CDP_4_6_dhtase (TIGR02622)