myRT

myRT report for GCA_010993705.1_ASM1099370v1

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Seq: WOFO01000011.1 Cyclobacterium sp. SYSU L10401 NODE_11_length_177256_cov_161.209938, whole genome shotgun sequence (177256 bp)
Overview 1 RT 1: 9875-16057 bp Neighborhood of RT #1 [9875, 16074] Response_reg RVT-Retrons WYL Feature: gene Location: 9875-12103 bp Feature: domain Description: Response_reg Location: 11159-11399 bp Feature: domain Description: Response_reg Location: 1 1 1 59-1 1 399 bp Feature: gene Location: 12100-13320 bp Feature: gene Location: 13321-14529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13522-14161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3522-1 41 61 bp Feature: gene Location: 14747-14884 bp Feature: gene Location: 15022-16074 bp Feature: domain Description: WYL Location: 15538-16057 bp Feature: domain Description: WYL Location: 1 5538-1 6057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Response_reg (pfam00072), RVT-Retrons, WYL (pfam13280)

Seq: WOFO01000017.1 Cyclobacterium sp. SYSU L10401 NODE_17_length_63442_cov_158.067300, whole genome shotgun sequence (63442 bp)
Overview 1 RT 1: 2-3797 bp Neighborhood of RT #1 [2, 3817] RVT-GII GIIM PRK12896 Feature: gene Location: 2-367 bp Feature: gene Location: 430-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-12 88 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1549 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1549 bp Feature: gene Location: 1772-2881 bp Feature: gene Location: 3053-3817 bp Feature: domain Description: PRK12896 Location: 3056-3797 bp Feature: domain Description: PRK12 896 Location: 3056-3797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK12896 (methionine aminopeptidase; Reviewed)

Seq: WOFO01000002.1 Cyclobacterium sp. SYSU L10401 NODE_2_length_778049_cov_153.877011, whole genome shotgun sequence (778049 bp)
Overview 1 RT 1: 772573-778047 bp Neighborhood of RT #1 [772573, 778046] DUF1080 SGNH_hydrolase_like_2 Piru_Ver_Nterm HEAT_2 CccA RVT-GII Feature: gene Location: 772573-776397 bp Feature: domain Description: DUF1080 Location: 772801-773341 bp Feature: domain Description: DUF1080 Location: 772801-773 3 41 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 773461-774007 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 773 461-774007 bp Feature: domain Description: Piru_Ver_Nterm Location: 774346-775408 bp Feature: domain Description: Piru_Ver_Nterm Location: 7743 46-775408 bp Feature: domain Description: HEAT_2 Location: 775642-775900 bp Feature: domain Description: HEAT_2 Location: 775642-775900 bp Feature: domain Description: CccA Location: 776014-776338 bp Feature: domain Description: CccA Location: 776014-7763 3 8 bp Feature: gene Location: 776912-777166 bp Feature: gene Location: 777450-778046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777645-778047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777645-778047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1080 (pfam06439), SGNH_hydrolase_like_2 (cd01834), Piru_Ver_Nterm (TIGR02604), HEAT_2 (pfam13646), CccA (COG2010), RVT-GII

Seq: WOFO01000005.1 Cyclobacterium sp. SYSU L10401 NODE_5_length_352846_cov_167.781640, whole genome shotgun sequence (352846 bp)
Overview 1 RT 1: 35470-40709 bp Neighborhood of RT #1 [35470, 40720] CoiA RVT-UG2 WYL WYL Feature: gene Location: 35470-35769 bp Feature: gene Location: 36366-37037 bp Feature: domain Description: CoiA Location: 36375-36753 bp Feature: domain Description: CoiA Location: 36375-36753 bp Feature: gene Location: 37544-39124 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 37778-38711 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 37778-38711 bp Feature: gene Location: 39258-39455 bp Feature: gene Location: 39581-40720 bp Feature: domain Description: WYL Location: 40220-40553 bp Feature: domain Description: WYL Location: 4 0220-4 0553 bp Feature: domain Description: WYL Location: 40634-40709 bp Feature: domain Description: WYL Location: 4 0634 -4 0709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), RVT-UG2, WYL (pfam13280)