myRT

myRT report for GCA_010998615.1_ASM1099861v1

Download annotations/find similar RTs

Seq: JAAEAH010000104.1 Myxococcus sp. CA023 NODE_104_length_30557_cov_66.2299, whole genome shotgun sequence (30557 bp)
Overview 1 RT 1: 1463-8299 bp Neighborhood of RT #1 [1463, 8457] Hepar_II_III_N Hepar_II_III AZL_007920_fam RVT-GII GIIM COG3617 P63C Feature: gene Location: 1463-3418 bp Feature: domain Description: Hepar_II_III_N Location: 1760-2480 bp Feature: domain Description: Hepar_II_III_N Location: 1 760-2480 bp Feature: domain Description: Hepar_II_III Location: 2525-3188 bp Feature: domain Description: Hepar_II_III Location: 2525-31 88 bp Feature: gene Location: 3504-4511 bp Feature: domain Description: AZL_007920_fam Location: 3852-4458 bp Feature: domain Description: AZL_007920_fam Location: 3852-4458 bp Feature: gene Location: 5103-6413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5388-6006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5388-6006 bp Feature: domain Description: GIIM Note: maturase Location: 6078-6300 bp Feature: domain Description: GIIM Note: maturase Location: 6078-6300 bp Feature: gene Location: 6924-7238 bp Feature: gene Location: 7681-8457 bp Feature: domain Description: COG3617 Location: 7687-7990 bp Feature: domain Description: COG361 7 Location: 7687-7990 bp Feature: domain Description: P63C Location: 8032-8299 bp Feature: domain Description: P63C Location: 8032-8299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hepar_II_III_N (pfam16889), Hepar_II_III (pfam07940), AZL_007920_fam (TIGR04052), RVT-GII, GIIM (pfam08388), COG3617 (Prophage antirepressor ), P63C (pfam10546)

Seq: JAAEAH010000111.1 Myxococcus sp. CA023 NODE_111_length_25032_cov_55.6292, whole genome shotgun sequence (25032 bp)
Overview 1 RT 1: 725-5657 bp Neighborhood of RT #1 [725, 5668] LPAM_1 COG4941 RVT-Retrons RNase_HI_like Feature: gene Location: 725-1393 bp Feature: domain Description: LPAM_1 Location: 914-965 bp Feature: domain Description: LPAM_1 Location: 914-965 bp Feature: gene Location: 1787-2983 bp Feature: domain Description: COG4941 Location: 1793-2963 bp Feature: domain Description: COG4941 Location: 1793-2 963 bp Feature: gene Location: 3352-4680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3796-4450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3796-4450 bp Feature: gene Location: 4782-5000 bp Feature: gene Location: 5030-5668 bp Feature: domain Description: RNase_HI_like Location: 5279-5657 bp Feature: domain Description: RNase_HI_like Location: 52 79-5657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), RVT-Retrons, RNase_HI_like (cd09279), LPAM_1 (pfam08139)

Seq: JAAEAH010000042.1 Myxococcus sp. CA023 NODE_42_length_79245_cov_65.651, whole genome shotgun sequence (79245 bp)
Overview 1 RT 1: 42615-49483 bp Neighborhood of RT #1 [42615, 49662] RVT-Retrons COG3791 EpmB Feature: gene Location: 42615-44480 bp Feature: gene Location: 44477-46075 bp Feature: gene Location: 46254-47537 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46719-47322 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46719-473 22 bp Feature: gene Location: 47546-47965 bp Feature: domain Description: COG3791 Location: 47570-47927 bp Feature: domain Description: COG3 791 Location: 47570-47927 bp Feature: gene Location: 48334-49662 bp Feature: domain Description: EpmB Location: 48397-49483 bp Feature: domain Description: EpmB Location: 483 97-49483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: JAAEAH010000049.1 Myxococcus sp. CA023 NODE_49_length_72007_cov_68.8197, whole genome shotgun sequence (72007 bp)
Overview 1 RT 1: 56541-69328 bp Neighborhood of RT #1 [56541, 69348] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 56541-63077 bp Feature: domain Description: WD40 Location: 56700-57396 bp Feature: domain Description: WD4 0 Location: 56700-57396 bp Feature: domain Description: HEAT_2 Location: 57618-57801 bp Feature: domain Description: HEAT_2 Location: 57618-57801 bp Feature: domain Description: HEAT_2 Location: 58383-58632 bp Feature: domain Description: HEAT_2 Location: 58383-58632 bp Feature: domain Description: HEAT_2 Location: 58677-58842 bp Feature: domain Description: HEAT_2 Location: 58677-5884 2 bp Feature: domain Description: HEAT_2 Location: 58872-59103 bp Feature: domain Description: HEAT_2 Location: 58872-59103 bp Feature: domain Description: HEAT_2 Location: 59541-59694 bp Feature: domain Description: HEAT_2 Location: 5954 1-59694 bp Feature: domain Description: HEAT_2 Location: 59802-59964 bp Feature: domain Description: HEAT_2 Location: 59802-59964 bp Feature: domain Description: HEAT_2 Location: 60324-60513 bp Feature: domain Description: HEAT_2 Location: 60324 -60513 bp Feature: domain Description: HEAT_2 Location: 60558-60765 bp Feature: domain Description: HEAT_2 Location: 60558-60765 bp Feature: domain Description: HEAT_2 Location: 60930-61164 bp Feature: domain Description: HEAT_2 Location: 60930-61164 bp Feature: domain Description: HEAT_2 Location: 61227-61386 bp Feature: domain Description: HEAT_2 Location: 61227-61386 bp Feature: domain Description: HEAT_2 Location: 61776-61992 bp Feature: domain Description: HEAT_2 Location: 61776-61992 bp Feature: domain Description: HEAT_2 Location: 62505-62724 bp Feature: domain Description: HEAT_2 Location: 62505-62724 bp Feature: domain Description: HEAT_2 Location: 62850-62988 bp Feature: domain Description: HEAT_2 Location: 62850-62988 bp Feature: gene Location: 63074-64927 bp Feature: gene Location: 65328-66785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65886-66528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65886-66528 bp Feature: gene Location: 66789-67679 bp Feature: domain Description: DAP2 Location: 66915-67494 bp Feature: domain Description: DAP2 Location: 66915-674 94 bp Feature: gene Location: 67825-69348 bp Feature: domain Description: BetA Location: 67840-68335 bp Feature: domain Description: BetA Location: 6784 0-68335 bp Feature: domain Description: BetA Location: 68476-68779 bp Feature: domain Description: BetA Location: 684 76-68779 bp Feature: domain Description: BetA Location: 68914-69328 bp Feature: domain Description: BetA Location: 68914 -69328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)